Guide to the Human Genome
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Name: CCDC112 Sequence: fasta or formatted (446aa) NCBI GI: 145580595
Description:

coiled-coil domain containing 112 isoform 2

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt prot [529aa] coiled-coil domain containing 112 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         20           2
 C cysteine            0.2          1           1
 D aspartate           4.0         18           2
 E glutamate          14.1         63           4
 F phenylalanine       3.4         15           1
 G glycine             2.5         11           2
 H histidine           3.4         15           1
 I isoleucine          4.9         22           1
 K lysine             16.1         72           2
 L leucine             8.3         37           3
 M methionine          1.6          7           2
 N asparagine          3.8         17           2
 P proline             3.1         14           1
 Q glutamine           8.3         37           3
 R arginine            6.5         29           2
 S serine              4.5         20           2
 T threonine           4.3         19           2
 V valine              3.6         16           1
 W tryptophan          1.6          7           1
 Y tyrosine            1.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 112 isoform 2 
CCDC112               1.000   coiled-coil domain containing 112 isoform 1 
LOC283767             0.081   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.077   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC727832             0.076   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.071   PREDICTED: hypothetical protein LOC645202 
LOC283685             0.066   PREDICTED: golgi autoantigen, golgin subfamily a-li...
INCENP                0.061   inner centromere protein antigens 135/155kDa isofor...
TCHH                  0.060   trichohyalin 
LOC283685             0.059   PREDICTED: golgi autoantigen, golgin subfamily a-li...
INCENP                0.058   inner centromere protein antigens 135/155kDa isofor...
LOC100133599          0.054   PREDICTED: hypothetical protein 
MYH11                 0.053   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.053   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.053   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.053   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
LOC400352             0.052   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.052   PREDICTED: similar to Putative golgin subfamily A m...
CENPF                 0.052   centromere protein F 
GIGYF2                0.051   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.051   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.051   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.051   GRB10 interacting GYF protein 2 isoform b 
KIF20B                0.051   M-phase phosphoprotein 1 
CCDC148               0.050   coiled-coil domain containing 148 
MYH10                 0.047   myosin, heavy polypeptide 10, non-muscle 
LOC100133599          0.046   PREDICTED: hypothetical protein 
GOLGA4                0.046   golgi autoantigen, golgin subfamily a, 4 
MYH2                  0.046   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.046   myosin, heavy chain 2, skeletal muscle, adult [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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