Guide to the Human Genome
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Name: HVCN1 Sequence: fasta or formatted (273aa) NCBI GI: 91992155
Description:

hydrogen voltage-gated channel 1

Referenced in:

Sodium Channels

Other entries for this name:
alt mRNA [273aa] hydrogen voltage-gated channel 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         22           3
 C cysteine            0.7          2           1
 D aspartate           3.7         10           2
 E glutamate           9.5         26           8
 F phenylalanine       6.6         18           2
 G glycine             3.3          9           1
 H histidine           3.3          9           2
 I isoleucine          8.1         22           3
 K lysine              5.5         15           2
 L leucine            12.8         35           2
 M methionine          2.9          8           2
 N asparagine          3.3          9           2
 P proline             4.4         12           3
 Q glutamine           4.0         11           1
 R arginine            6.6         18           2
 S serine              3.7         10           2
 T threonine           2.2          6           1
 V valine              8.4         23           5
 W tryptophan          1.5          4           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hydrogen voltage-gated channel 1 
HVCN1                 1.000   hydrogen voltage-gated channel 1 
C15orf27              0.111   hypothetical protein LOC123591 
TPTE                  0.093   transmembrane phosphatase with tensin homology isofo...
TPTE                  0.078   transmembrane phosphatase with tensin homology isofo...
TPTE                  0.076   transmembrane phosphatase with tensin homology isof...
TPTE2                 0.072   TPTE and PTEN homologous inositol lipid phosphatase...
SCN11A                0.056   sodium channel, voltage-gated, type XI, alpha [Homo...
SCN3A                 0.054   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.054   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.054   sodium channel, voltage-gated, type III, alpha isof...
SCN1A                 0.052   sodium channel, voltage-gated, type I, alpha 
SCN2A                 0.052   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.052   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.052   sodium channel, voltage-gated, type II, alpha isofor...
SCN8A                 0.052   sodium channel, voltage gated, type VIII, alpha [Homo...
CACNA1D               0.049   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.049   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.049   calcium channel, voltage-dependent, L type, alpha 1D ...
SCN9A                 0.047   sodium channel, voltage-gated, type IX, alpha 
SCN5A                 0.043   voltage-gated sodium channel type V alpha isoform f...
SCN5A                 0.043   voltage-gated sodium channel type V alpha isoform a ...
SCN5A                 0.043   voltage-gated sodium channel type V alpha isoform b ...
SCN5A                 0.043   voltage-gated sodium channel type V alpha isoform d...
SCN5A                 0.043   voltage-gated sodium channel type V alpha isoform c...
LOC100294386          0.043   PREDICTED: similar to sodium channel, voltage-gated...
SCN4A                 0.041   voltage-gated sodium channel type 4 alpha 
CACNA1C               0.039   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.039   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.039   calcium channel, voltage-dependent, L type, alpha 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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