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Name: CACNA1D Sequence: fasta or formatted (2161aa) NCBI GI: 192807300
Description:

calcium channel, voltage-dependent, L type, alpha 1D subunit isoform b

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [2137aa] calcium channel, voltage-dependent, L type, alpha 1D subunit isof...
alt prot [2181aa] calcium channel, voltage-dependent, L type, alpha 1D subunit isof...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5        141           2
 C cysteine            2.1         45           2
 D aspartate           4.9        106           3
 E glutamate           6.6        142           8
 F phenylalanine       5.8        126           2
 G glycine             5.5        118           2
 H histidine           2.2         47           2
 I isoleucine          6.6        143           3
 K lysine              4.8        104           2
 L leucine             9.3        202           5
 M methionine          2.7         59           7
 N asparagine          5.5        118           3
 P proline             5.1        111           3
 Q glutamine           3.7         79           3
 R arginine            5.9        127           3
 S serine              7.3        157           3
 T threonine           4.8        104           2
 V valine              6.3        137           2
 W tryptophan          1.2         27           1
 Y tyrosine            3.1         68           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium channel, voltage-dependent, L type, alpha 1... 
CACNA1D               0.994   calcium channel, voltage-dependent, L type, alpha 1D ...
CACNA1D               0.984   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.629   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.628   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.626   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.626   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.626   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.626   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.626   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.625   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.625   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.624   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.623   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.623   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.623   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.623   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.623   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.623   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.622   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.622   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.622   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.622   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1F               0.544   calcium channel, voltage-dependent, L type, alpha 1F...
CACNA1S               0.516   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1A               0.172   calcium channel, alpha 1A subunit isoform 3 
CACNA1A               0.170   calcium channel, alpha 1A subunit isoform 4 
CACNA1B               0.169   calcium channel, voltage-dependent, N type, alpha 1B ...
CACNA1E               0.162   calcium channel, voltage-dependent, R type, alpha 1E...
SCN2A                 0.091   sodium channel, voltage-gated, type II, alpha isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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