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Search of human proteins with 8923665
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923665 CUE domain-containing 1 [Homo sapiens]
(386 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8923665 CUE domain-containing 1 [Homo sapiens] 786 0.0
gi|150417989 cyclin K isoform 1 [Homo sapiens] 44 2e-04
gi|4507161 SRY-box 11 [Homo sapiens] 43 5e-04
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 42 0.001
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 42 0.001
gi|122937243 dual specificity phosphatase 27 [Homo sapiens] 40 0.004
gi|55956910 meningioma 1 [Homo sapiens] 40 0.004
gi|21361619 toll interacting protein [Homo sapiens] 39 0.006
gi|4758216 dishevelled 2 [Homo sapiens] 39 0.008
gi|146134388 YLP motif containing 1 [Homo sapiens] 39 0.008
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 37 0.023
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 37 0.023
gi|5901944 elastin microfibril interfacer 1 [Homo sapiens] 37 0.030
gi|7706501 WW domain binding protein 11 [Homo sapiens] 37 0.030
gi|156415988 zinc finger and BTB domain containing 7B [Homo sapi... 37 0.039
gi|239752951 PREDICTED: similar to kruppel-related zinc finger p... 37 0.039
gi|239752949 PREDICTED: similar to kruppel-related zinc finger p... 37 0.039
gi|239752947 PREDICTED: similar to kruppel-related zinc finger p... 37 0.039
gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens] 37 0.039
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 37 0.039
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap... 37 0.039
gi|197313672 carnitine deficiency-associated gene expressed in v... 36 0.051
gi|8923710 carnitine deficiency-associated gene expressed in ven... 36 0.051
gi|47825361 non-specific cytotoxic cell receptor protein 1 homol... 36 0.051
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 36 0.051
gi|21362096 hypothetical protein LOC64773 [Homo sapiens] 36 0.067
gi|38570105 Ras-interacting protein 1 [Homo sapiens] 35 0.088
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 35 0.088
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 35 0.088
gi|11415052 retinoid X receptor, beta [Homo sapiens] 35 0.11
>gi|8923665 CUE domain-containing 1 [Homo sapiens]
Length = 386
Score = 786 bits (2031), Expect = 0.0
Identities = 386/386 (100%), Positives = 386/386 (100%)
Query: 1 MTSLFRRSSSGSGGGGTAGARGGGGGTAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPN 60
MTSLFRRSSSGSGGGGTAGARGGGGGTAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPN
Sbjct: 1 MTSLFRRSSSGSGGGGTAGARGGGGGTAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPN 60
Query: 61 MDYDIIECVLRANSGAVDATIDQLLQMNLEGGGSSGGVYEDSSDSEDSIPPEILERTLEP 120
MDYDIIECVLRANSGAVDATIDQLLQMNLEGGGSSGGVYEDSSDSEDSIPPEILERTLEP
Sbjct: 61 MDYDIIECVLRANSGAVDATIDQLLQMNLEGGGSSGGVYEDSSDSEDSIPPEILERTLEP 120
Query: 121 DSSDEEPPPVYSPPAYHMHVFDRPYPLAPPTPPPRIDALGSGAPTSQRRYRNWNPPLLGN 180
DSSDEEPPPVYSPPAYHMHVFDRPYPLAPPTPPPRIDALGSGAPTSQRRYRNWNPPLLGN
Sbjct: 121 DSSDEEPPPVYSPPAYHMHVFDRPYPLAPPTPPPRIDALGSGAPTSQRRYRNWNPPLLGN 180
Query: 181 LPDDFLRILPQQLDSIQGNAGGPKPGSGEGCPPAMAGPGPGDQESRWKQYLEDERIALFL 240
LPDDFLRILPQQLDSIQGNAGGPKPGSGEGCPPAMAGPGPGDQESRWKQYLEDERIALFL
Sbjct: 181 LPDDFLRILPQQLDSIQGNAGGPKPGSGEGCPPAMAGPGPGDQESRWKQYLEDERIALFL 240
Query: 241 QNEEFMKELQRNRDFLLALERDRLKYESQKSKSSSVAVGNDFGFSSPVPGTGDANPAVSE 300
QNEEFMKELQRNRDFLLALERDRLKYESQKSKSSSVAVGNDFGFSSPVPGTGDANPAVSE
Sbjct: 241 QNEEFMKELQRNRDFLLALERDRLKYESQKSKSSSVAVGNDFGFSSPVPGTGDANPAVSE 300
Query: 301 DALFRDKLKHMGKSTRRKLFELARAFSEKTKMRKSKRKHLLKHQSLGAAASTANLLDDVE 360
DALFRDKLKHMGKSTRRKLFELARAFSEKTKMRKSKRKHLLKHQSLGAAASTANLLDDVE
Sbjct: 301 DALFRDKLKHMGKSTRRKLFELARAFSEKTKMRKSKRKHLLKHQSLGAAASTANLLDDVE 360
Query: 361 GHACDEDFRGRRQEAPKVEEGLREGQ 386
GHACDEDFRGRRQEAPKVEEGLREGQ
Sbjct: 361 GHACDEDFRGRRQEAPKVEEGLREGQ 386
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 44.3 bits (103), Expect = 2e-04
Identities = 36/102 (35%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 128 PPVYSPPA---YHMHVFDRPYPLAPPTPPPRIDALGSGAPTSQRRYRNWNPPLLGNLPDD 184
PP Y PPA YH HV+ P P PP PPP P Y P N P
Sbjct: 462 PPAYGPPAHLPYHPHVYP-PNPPPPPVPPPPASFPPPAIPPPTPGYPPPPPTYNPNFPPP 520
Query: 185 FLRILPQQLDSIQGNAGGPKPGSGEGCPPAMAGP---GPGDQ 223
R+ P +A P P G G PPA P PG Q
Sbjct: 521 PPRLPPT-------HAVPPHPPPGLGLPPASYPPPAVPPGGQ 555
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 42.7 bits (99), Expect = 5e-04
Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 21/157 (13%)
Query: 9 SSGSGGGGTAGARGGGGGTAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPNMDYDIIEC 68
S+ GGGG+AG GG T+ +S+ +++ A + DY
Sbjct: 141 SAAGGGGGSAGGGAGGAKTSK----GSSKKCGKLKAPAAAGAKAGAGKAAQSGDY----- 191
Query: 69 VLRANSGAVDATIDQLLQMNLEGGGSSGG----VYEDSSDSEDSIPPEI-LERTLEPDSS 123
GA D + L+++ GGG +G V+ D D +D E+ L+ EPD
Sbjct: 192 -----GGAGDDYVLGSLRVSGSGGGGAGKTVKCVFLDEDDDDDDDDDELQLQIKQEPDEE 246
Query: 124 DEEPP--PVYSPPAYHMHVFDRPYPLAPPTPPPRIDA 158
DEEPP + PP R Y +A P + +
Sbjct: 247 DEEPPHQQLLQPPGQQPSQLLRRYNVAKVPASPTLSS 283
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 42.0 bits (97), Expect = 0.001
Identities = 37/110 (33%), Positives = 44/110 (40%), Gaps = 23/110 (20%)
Query: 104 DSEDSIPPEILERTLEPDSSDEEPPPVYSPPAYHMHVFDRPYPLAPPTPPPRIDALGSGA 163
+ + S PP L P SS E PPP PP V + P APP PP + LG+ A
Sbjct: 415 EQQASTPPPPPPPPLLPGSSAEPPPPPPPPPL--PSVGAKALPTAPPPPP--LPGLGAMA 470
Query: 164 PTSQRRYRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPKPGSGEGCPP 213
P + PPL LP + P P P G GCPP
Sbjct: 471 PPA--------PPLPPPLPGSCEFLPPP-----------PPPLPGLGCPP 501
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 42.0 bits (97), Expect = 0.001
Identities = 37/110 (33%), Positives = 44/110 (40%), Gaps = 23/110 (20%)
Query: 104 DSEDSIPPEILERTLEPDSSDEEPPPVYSPPAYHMHVFDRPYPLAPPTPPPRIDALGSGA 163
+ + S PP L P SS E PPP PP V + P APP PP + LG+ A
Sbjct: 415 EQQASTPPPPPPPPLLPGSSAEPPPPPPPPPL--PSVGAKALPTAPPPPP--LPGLGAMA 470
Query: 164 PTSQRRYRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPKPGSGEGCPP 213
P + PPL LP + P P P G GCPP
Sbjct: 471 PPA--------PPLPPPLPGSCEFLPPP-----------PPPLPGLGCPP 501
>gi|122937243 dual specificity phosphatase 27 [Homo sapiens]
Length = 1158
Score = 40.0 bits (92), Expect = 0.004
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 232 EDERIALFLQNEEFMKELQRNRDFLLALERDRLKYESQKSKSSSVAVGNDFGFSSPVPGT 291
ED+ ++ + F RN+D L ALER ++K + G+ G
Sbjct: 517 EDDEDSVGSEASSFYNFCSRNKDKLTALERWKIKRIQFGFHKKDLGAGDSSGEPGAEEAV 576
Query: 292 GDANPA-VSEDALFRDKLKH---MGKSTRRKLFELARAFSEKTKMRKSKRKHLLK--HQS 345
G+ NP+ VS A KLKH +G + ++ EL++ ++ +R LL+ Q+
Sbjct: 577 GEKNPSDVSLTAYQAWKLKHQKKVGSENKEEVVELSKGEDSALAKKRQRRLELLERSRQT 636
Query: 346 LGAAASTAN 354
L + S A+
Sbjct: 637 LEESQSMAS 645
Score = 29.3 bits (64), Expect = 6.3
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 202 GPKPGSGE-GCPPAMAGPGPGDQE-SRWKQYLEDERIALFLQNEEFMKELQRNRDFLLA- 258
G SGE G A+ P D + ++ + + + +N+E + EL + D LA
Sbjct: 562 GAGDSSGEPGAEEAVGEKNPSDVSLTAYQAWKLKHQKKVGSENKEEVVELSKGEDSALAK 621
Query: 259 --------LERDRLKYESQKSKSSSVAVGNDFGFSSPVPGTGDANPAVSED 301
LER R E +S +S A + S P+ A+P+VS D
Sbjct: 622 KRQRRLELLERSRQTLEESQSMASWEADSSTASGSIPLSAFWSADPSVSAD 672
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 40.0 bits (92), Expect = 0.004
Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 15/194 (7%)
Query: 91 GGGSSGGVYEDSSDSEDSIPPEILE-RTLEPDS----SDEEPPPVYSPPAYHMHVFDRPY 145
GG GG S ++ P LE R++ P S S + PPP +P H FD P
Sbjct: 391 GGLQDGGPMLPSQHAQFEYPIHRLENRSMHPYSEPVFSMQHPPPQQAPNQRLQH-FDAP- 448
Query: 146 PLAPPTPPPRIDALGSGAPTSQRRYRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPKP 205
P PR D GS R +WN + D+ L P + G P P
Sbjct: 449 PYMNVAKRPRFDFPGSAGVD---RCASWNGSMHNGALDNHLS--PSAYPGLPGEFTPPVP 503
Query: 206 GSGEGCPPAMAGPGPGDQ--ESRWKQYLEDERIALFLQNEEFMKELQRNRDFLLALERDR 263
S PP + P P Q + + +Q + ++ Q ++ ++ Q+ ++ L +++
Sbjct: 504 DSFPSGPP-LQHPAPDHQSLQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQNAALMIKQMA 562
Query: 264 LKYESQKSKSSSVA 277
+ + Q+ + ++A
Sbjct: 563 SRNQQQRLRQPNLA 576
Score = 28.9 bits (63), Expect = 8.2
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 10 SGSGGGGTAGARGGGGGTAAPQ 31
S GGGG++G GGGGG PQ
Sbjct: 768 SAGGGGGSSGG-GGGGGAYPPQ 788
>gi|21361619 toll interacting protein [Homo sapiens]
Length = 274
Score = 39.3 bits (90), Expect = 0.006
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 57 MFPNMDYDIIECVLRANSGAVDATIDQLLQMNLE 90
MFPNMD ++I VL A G DA I+ LLQM E
Sbjct: 240 MFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 273
>gi|4758216 dishevelled 2 [Homo sapiens]
Length = 736
Score = 38.9 bits (89), Expect = 0.008
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 6/127 (4%)
Query: 97 GVYEDSSDSEDSIPPEILERTLEPDSSDEEPPPVYSPPAYHMHV-FDRPYPLAPPTPPPR 155
GV ++ +++ P R + S + P P +PP + P P PP PP R
Sbjct: 65 GVVKEEISDDNARLPCFNGRVVSWLVSSDNPQPEMAPPVHEPRAELAPPAPPLPPLPPER 124
Query: 156 IDALGSGAPTS-----QRRYRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPKPGSGEG 210
+G P S + N P R P++ DS + AGG + G
Sbjct: 125 TSGIGDSRPPSFHPNVSSSHENLEPETETESVVSLRRERPRRRDSSEHGAGGHRTGGPSR 184
Query: 211 CPPAMAG 217
+AG
Sbjct: 185 LERHLAG 191
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 38.9 bits (89), Expect = 0.008
Identities = 38/141 (26%), Positives = 51/141 (36%), Gaps = 12/141 (8%)
Query: 108 SIPPEILERTLEPDSSDEEPPPVYSPPAYHMHVFDRPYPLAPPTP--PPRIDALGSGAPT 165
++PP +L +L P P PP V P + P P PP + + G
Sbjct: 532 TMPPPVLPPSLPPPVMPPALPATVPPPGMPPPVMPPSLPTSVPPPGMPPSLSSAGPPPVL 591
Query: 166 SQRRYRNWNPP-------LLGNLPDDFLRILPQQLDSIQGNAGGPKPGSGEGCPPAM-AG 217
+ PP L P + + P L S G P PG +G PP + A
Sbjct: 592 PPPSLSSAGPPPVLPPPSLSSTAPPPVMPLPP--LSSATPPPGIPPPGVPQGIPPQLTAA 649
Query: 218 PGPGDQESRWKQYLEDERIAL 238
P P S+ Q E R AL
Sbjct: 650 PVPPASSSQSSQVPEKPRPAL 670
Score = 29.3 bits (64), Expect = 6.3
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 13/126 (10%)
Query: 111 PEILERTLEPDSSDEEPPPVYSPPAYHMHVFDRPY-PLAPPTPPPRIDALGSGAPTSQRR 169
P + + P S PPP PP+Y+ +PY P A P+P + APT
Sbjct: 150 PPVPPGSYMPPSQSYMPPP-QPPPSYYPPTSSQPYLPPAQPSPSQSPPSQSYLAPTPSYS 208
Query: 170 YRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPKPGSGEG---CPPAMAGPGPGDQESR 226
+ + +L L S Q + P G + PP + P PG++ +
Sbjct: 209 SSS-------SSSQSYLSHSQSYLPSSQASPSRPSQGHSKSQLLAPPPPSAP-PGNKTTV 260
Query: 227 WKQYLE 232
++ LE
Sbjct: 261 QQEPLE 266
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 37.4 bits (85), Expect = 0.023
Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 16/117 (13%)
Query: 118 LEPDSSDEEPPPVYSPP-----------AYHMHVFDRPYPLAPPTPPPRIDALGSGAPTS 166
L P P P + PP A H HV + P PP PP + A G ++
Sbjct: 1677 LPPPPPPPGPAPHHHPPPHPSTGLQGLQAQHQHVVNSAPPPPPPPPPSSVLASGHHTTSA 1736
Query: 167 QRRYR--NWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPK---PGSGEGCPPAMAGP 218
Q + + PPL + + P Q GP+ G+G CP + GP
Sbjct: 1737 QALHHPPHQGPPLFPSSAHPTVPPYPSQATHHTTLGPGPQHQPSGTGPHCPLPVTGP 1793
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 37.4 bits (85), Expect = 0.023
Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 16/117 (13%)
Query: 118 LEPDSSDEEPPPVYSPP-----------AYHMHVFDRPYPLAPPTPPPRIDALGSGAPTS 166
L P P P + PP A H HV + P PP PP + A G ++
Sbjct: 1677 LPPPPPPPGPAPHHHPPPHPSTGLQGLQAQHQHVVNSAPPPPPPPPPSSVLASGHHTTSA 1736
Query: 167 QRRYR--NWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPK---PGSGEGCPPAMAGP 218
Q + + PPL + + P Q GP+ G+G CP + GP
Sbjct: 1737 QALHHPPHQGPPLFPSSAHPTVPPYPSQATHHTTLGPGPQHQPSGTGPHCPLPVTGP 1793
>gi|5901944 elastin microfibril interfacer 1 [Homo sapiens]
Length = 1016
Score = 37.0 bits (84), Expect = 0.030
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 191 QQLDSIQGNAGGPKPGSGEGCP-PAMAGPGPGDQESRWKQYLEDERIALFLQN-EEFMKE 248
Q+L + + GG G P PA A PGP ++ R + E ++ L + F ++
Sbjct: 256 QELGHLNNHHGGSSSSGGSRAPAPASAPPGPSEELLRQLEQRLQESCSVCLAGLDGFRRQ 315
Query: 249 LQRNRDFLLALERDRLKYESQKSKSSSVAVG 279
Q +R+ L A+E+ E ++ + +AVG
Sbjct: 316 QQEDRERLRAMEKLLASVEERQRHLAGLAVG 346
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 37.0 bits (84), Expect = 0.030
Identities = 37/136 (27%), Positives = 50/136 (36%), Gaps = 19/136 (13%)
Query: 100 EDSSDSEDSIPPEILERTLEPDS---------SDEEPPPVYSPPAY-HMHVFDRPYPLAP 149
+D DS+DS + ++ + +S S ++ PP PP+ P PL P
Sbjct: 356 DDEDDSDDSEAEKQSQKQHKEESHSDGTSTASSQQQAPPQSVPPSQIQAPPMPGPPPLGP 415
Query: 150 PTPPP-----RIDALGSGAPTSQRRYRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPK 204
P PP L G P + PP + L R+LP G GP
Sbjct: 416 PPAPPLRPPGPPTGLPPGPPPGAPPF--LRPPGMPGLRGPLPRLLPP--GPPPGRPPGPP 471
Query: 205 PGSGEGCPPAMAGPGP 220
PG G PP GP
Sbjct: 472 PGPPPGLPPGPPPRGP 487
>gi|156415988 zinc finger and BTB domain containing 7B [Homo
sapiens]
Length = 539
Score = 36.6 bits (83), Expect = 0.039
Identities = 58/234 (24%), Positives = 82/234 (35%), Gaps = 39/234 (16%)
Query: 5 FRRSSSGSGGGGTAGARGGG----GGTAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPN 60
F++ + GGG GA G G G A EL+ P LEF T N
Sbjct: 59 FKKLFTEGGGGAVMGAGGSGTATGGAGAGVCELDFVGPEALGALLEFAYTAT-LTTSSAN 117
Query: 61 MDYDIIECVLRANSGAVDATIDQLLQMNLEGGGSSGGVYEDSSDSED-SIPPEILERTLE 119
M +++ V A ++LQ G+ S D +D + LE
Sbjct: 118 MPA-VLQAARLLEIPCVIAACMEILQ--------GSGLEAPSPDEDDCERARQYLEAFAT 168
Query: 120 PDSS-----DEEPPPVYSPPAYHMHVFDRPYPLAPPTPPPRIDALGSGAPT-----SQRR 169
+S ++ PP V PP PP PPPR A S P ++
Sbjct: 169 ATASGVPNGEDSPPQVPLPP--------------PPPPPPRPVARRSRKPRKAFLQTKGA 214
Query: 170 YRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPKPGSGEGCPPAMAGPGPGDQ 223
N P + +P L +++ G++GG PG P A P G Q
Sbjct: 215 RANHLVPEVPTVPAHPLTYEEEEVAGRVGSSGGSGPGDSYSPPTGTASPPEGPQ 268
>gi|239752951 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 3 [Homo sapiens]
Length = 573
Score = 36.6 bits (83), Expect = 0.039
Identities = 58/234 (24%), Positives = 82/234 (35%), Gaps = 39/234 (16%)
Query: 5 FRRSSSGSGGGGTAGARGGG----GGTAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPN 60
F++ + GGG GA G G G A EL+ P LEF T N
Sbjct: 93 FKKLFTEGGGGAVMGAGGSGTATGGAGAGVCELDFVGPEALGALLEFAYTAT-LTTSSAN 151
Query: 61 MDYDIIECVLRANSGAVDATIDQLLQMNLEGGGSSGGVYEDSSDSED-SIPPEILERTLE 119
M +++ V A ++LQ G+ S D +D + LE
Sbjct: 152 MPA-VLQAARLLEIPCVIAACMEILQ--------GSGLEAPSPDEDDCERARQYLEAFAT 202
Query: 120 PDSS-----DEEPPPVYSPPAYHMHVFDRPYPLAPPTPPPRIDALGSGAPT-----SQRR 169
+S ++ PP V PP PP PPPR A S P ++
Sbjct: 203 ATASGVPNGEDSPPQVPLPP--------------PPPPPPRPVARRSRKPRKAFLQTKGA 248
Query: 170 YRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPKPGSGEGCPPAMAGPGPGDQ 223
N P + +P L +++ G++GG PG P A P G Q
Sbjct: 249 RANHLVPEVPTVPAHPLTYEEEEVAGRVGSSGGSGPGDSYSPPTGTASPPEGPQ 302
>gi|239752949 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 1 [Homo sapiens]
Length = 539
Score = 36.6 bits (83), Expect = 0.039
Identities = 58/234 (24%), Positives = 82/234 (35%), Gaps = 39/234 (16%)
Query: 5 FRRSSSGSGGGGTAGARGGG----GGTAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPN 60
F++ + GGG GA G G G A EL+ P LEF T N
Sbjct: 59 FKKLFTEGGGGAVMGAGGSGTATGGAGAGVCELDFVGPEALGALLEFAYTAT-LTTSSAN 117
Query: 61 MDYDIIECVLRANSGAVDATIDQLLQMNLEGGGSSGGVYEDSSDSED-SIPPEILERTLE 119
M +++ V A ++LQ G+ S D +D + LE
Sbjct: 118 MPA-VLQAARLLEIPCVIAACMEILQ--------GSGLEAPSPDEDDCERARQYLEAFAT 168
Query: 120 PDSS-----DEEPPPVYSPPAYHMHVFDRPYPLAPPTPPPRIDALGSGAPT-----SQRR 169
+S ++ PP V PP PP PPPR A S P ++
Sbjct: 169 ATASGVPNGEDSPPQVPLPP--------------PPPPPPRPVARRSRKPRKAFLQTKGA 214
Query: 170 YRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPKPGSGEGCPPAMAGPGPGDQ 223
N P + +P L +++ G++GG PG P A P G Q
Sbjct: 215 RANHLVPEVPTVPAHPLTYEEEEVAGRVGSSGGSGPGDSYSPPTGTASPPEGPQ 268
>gi|239752947 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 2 [Homo sapiens]
Length = 539
Score = 36.6 bits (83), Expect = 0.039
Identities = 58/234 (24%), Positives = 82/234 (35%), Gaps = 39/234 (16%)
Query: 5 FRRSSSGSGGGGTAGARGGG----GGTAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPN 60
F++ + GGG GA G G G A EL+ P LEF T N
Sbjct: 59 FKKLFTEGGGGAVMGAGGSGTATGGAGAGVCELDFVGPEALGALLEFAYTAT-LTTSSAN 117
Query: 61 MDYDIIECVLRANSGAVDATIDQLLQMNLEGGGSSGGVYEDSSDSED-SIPPEILERTLE 119
M +++ V A ++LQ G+ S D +D + LE
Sbjct: 118 MPA-VLQAARLLEIPCVIAACMEILQ--------GSGLEAPSPDEDDCERARQYLEAFAT 168
Query: 120 PDSS-----DEEPPPVYSPPAYHMHVFDRPYPLAPPTPPPRIDALGSGAPT-----SQRR 169
+S ++ PP V PP PP PPPR A S P ++
Sbjct: 169 ATASGVPNGEDSPPQVPLPP--------------PPPPPPRPVARRSRKPRKAFLQTKGA 214
Query: 170 YRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPKPGSGEGCPPAMAGPGPGDQ 223
N P + +P L +++ G++GG PG P A P G Q
Sbjct: 215 RANHLVPEVPTVPAHPLTYEEEEVAGRVGSSGGSGPGDSYSPPTGTASPPEGPQ 268
>gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens]
Length = 1049
Score = 36.6 bits (83), Expect = 0.039
Identities = 32/94 (34%), Positives = 37/94 (39%), Gaps = 22/94 (23%)
Query: 127 PPPVYSPPAYHMHVFDRPYPLAPPTPPPRIDALGSGAPTSQRRYRNWNPPLLGNLPDDFL 186
PPP PPA+ +P LAPP PP + G PT R LL N P
Sbjct: 958 PPPGMPPPAWR-----QPSLLAPPGPPNWL-----GPPTQSGTPRGGALLLLRNSPQPLR 1007
Query: 187 RILPQQLDSIQGNAGGPKPGSGEGCPPAMAGPGP 220
R + G +G G PPA A PGP
Sbjct: 1008 R-------AASGGSGSENVG-----PPAAAVPGP 1029
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo
sapiens]
Length = 2603
Score = 36.6 bits (83), Expect = 0.039
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 8 SSSGSGGGGTAGARGGGGGTA---APQELNNSRPARQVRRLE-FNQAMDDFKTMFPNMDY 63
S + GGGG G GGGGGT+ + +E ++ +V +E F DD + P ++
Sbjct: 92 SDNSGGGGGGGGGGGGGGGTSSNNSEEEEDDDDEEEEVSEVESFILDQDDLEN--PMLET 149
Query: 64 DIIECVLRANSGAVDATIDQLLQMNLEGGGSSGGVYE-DSSDSEDSIPPEILER 116
+ GA T+D Q LE + G+ + ++D + PE+L R
Sbjct: 150 ASKLLLSGTADGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRR 203
>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo
sapiens]
Length = 2352
Score = 36.6 bits (83), Expect = 0.039
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 8 SSSGSGGGGTAGARGGGGGTA---APQELNNSRPARQVRRLE-FNQAMDDFKTMFPNMDY 63
S + GGGG G GGGGGT+ + +E ++ +V +E F DD + P ++
Sbjct: 92 SDNSGGGGGGGGGGGGGGGTSSNNSEEEEDDDDEEEEVSEVESFILDQDDLEN--PMLET 149
Query: 64 DIIECVLRANSGAVDATIDQLLQMNLEGGGSSGGVYE-DSSDSEDSIPPEILER 116
+ GA T+D Q LE + G+ + ++D + PE+L R
Sbjct: 150 ASKLLLSGTADGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRR 203
>gi|197313672 carnitine deficiency-associated gene expressed in
ventricle 3 isoform a [Homo sapiens]
Length = 213
Score = 36.2 bits (82), Expect = 0.051
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 17/152 (11%)
Query: 8 SSSGSGGGGTAGARGGGGGTAAPQELNNSRPARQVRRLEFNQAMDDFKTM-FPNMDYDII 66
++ +GGG AG R G GGTA+ + V + E D++K + +DY +
Sbjct: 44 AAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVTKDE-----DEWKELEQKEVDYSGL 98
Query: 67 ECVLRANSGAVDATIDQLLQ---MNLEGGGSSGGVYEDSSDSEDSIPPEILERTLEPDSS 123
S + ++ Q N E GG GG E SS + P ++ P
Sbjct: 99 RVQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAP--VQAPPAPVIV 156
Query: 124 DEEPPP-----VYSPPAYHMHVFDRPYPLAPP 150
E P P VY PP + R P PP
Sbjct: 157 TETPEPAMTSGVYRPPGARL-TTTRKTPQGPP 187
>gi|8923710 carnitine deficiency-associated gene expressed in
ventricle 3 isoform b [Homo sapiens]
Length = 258
Score = 36.2 bits (82), Expect = 0.051
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 17/152 (11%)
Query: 8 SSSGSGGGGTAGARGGGGGTAAPQELNNSRPARQVRRLEFNQAMDDFKTM-FPNMDYDII 66
++ +GGG AG R G GGTA+ + V + E D++K + +DY +
Sbjct: 44 AAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVTKDE-----DEWKELEQKEVDYSGL 98
Query: 67 ECVLRANSGAVDATIDQLLQ---MNLEGGGSSGGVYEDSSDSEDSIPPEILERTLEPDSS 123
S + ++ Q N E GG GG E SS + P ++ P
Sbjct: 99 RVQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAP--VQAPPAPVIV 156
Query: 124 DEEPPP-----VYSPPAYHMHVFDRPYPLAPP 150
E P P VY PP + R P PP
Sbjct: 157 TETPEPAMTSGVYRPPGARL-TTTRKTPQGPP 187
>gi|47825361 non-specific cytotoxic cell receptor protein 1 homolog
[Homo sapiens]
Length = 275
Score = 36.2 bits (82), Expect = 0.051
Identities = 35/104 (33%), Positives = 41/104 (39%), Gaps = 19/104 (18%)
Query: 90 EGGGSSGGVYEDSSDSEDSIPPEILERTLEPDSSDEEPPPVYSPPAYHMHVFDRPYPLAP 149
EG GG+ D S +PP R+ P S PPP+ SPP+ P P AP
Sbjct: 6 EGHALGGGMEADGPASLQELPPS--PRSPSPPPS---PPPLPSPPSL-------PSPAAP 53
Query: 150 PTPPPRIDALGSGAPTSQRRYRNWNPPLLGNLPDDFLRILPQQL 193
P A S A Q W PL G L LPQ+L
Sbjct: 54 EAPELPEPAQPSEAHARQLLLEEWG-PLSGGLE------LPQRL 90
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 36.2 bits (82), Expect = 0.051
Identities = 79/309 (25%), Positives = 108/309 (34%), Gaps = 60/309 (19%)
Query: 90 EGGGSSGGVYEDSSDSEDSIPPEILERTLEPDSSDEEPPPVYSPPAYHMHVFDRPYPLAP 149
+G G + GV + + S PP + P S P P PPA V P P
Sbjct: 113 QGPGPAPGV-GSAPPASSSAPPATPPTSGAPPGSGPGPTPT-PPPA----VTSAPPGAPP 166
Query: 150 PTPPPRIDALGSGAPTSQRRYRNWNPPLLGNLPDDFLRILPQQLDSIQGNA--------- 200
PTPP SG PT+ PP G P + QG
Sbjct: 167 PTPP------SSGVPTT--------PPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKM 212
Query: 201 -GGPKPGSGEGC--------PPAMAGPGPGDQESRWKQYLEDERI-----ALFLQNEEFM 246
GGPKPG G G PP G P Y + ++EE +
Sbjct: 213 PGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKI 272
Query: 247 KELQRNRDFLLALERDRLKYESQKSKSSSVAVGNDFGFSSPVPGTGDANPAV-----SED 301
+ + + L L R K +Q+ + + VGN P T D +
Sbjct: 273 SDSEGFKANLSLLRRPGEKTYTQRCR---LFVGN-----LPADITEDEFKRLFAKYGEPG 324
Query: 302 ALFRDKLKHMG--KSTRRKLFELARAFSEKTKMRKSKRKHLLKHQSLGAAASTANLLDDV 359
+F +K K G K R L E+A+A + T MR R+ ++ + AA S NL V
Sbjct: 325 EVFINKGKGFGFIKLESRALAEIAKAELDDTPMR--GRQLRVRFATHAAALSVRNLSPYV 382
Query: 360 EGHACDEDF 368
+E F
Sbjct: 383 SNELLEEAF 391
Score = 35.4 bits (80), Expect = 0.088
Identities = 57/249 (22%), Positives = 76/249 (30%), Gaps = 84/249 (33%)
Query: 7 RSSSGSGGGGTAGARGGGGGTAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPNMDYDII 66
R S GGGG RGGGGG + DF++ P M
Sbjct: 5 RFRSRGGGGGGFHRRGGGGGRGG---------------------LHDFRSPPPGMG---- 39
Query: 67 ECVLRANSGAVDATIDQLLQMNLEGGGSSGGVYEDSSDSEDSIPPEILERTLEPDSSDEE 126
L N G + G G SG + IPP P ++
Sbjct: 40 ---LNQNRGPMGP-----------GPGQSG--------PKPPIPPP------PPHQQQQQ 71
Query: 127 PPPVY----SPPAYHMHVFDRPYPLAPPTPPPR-----IDALGSG-------APTSQRRY 170
PPP PP + +P+ P PPP+ + A G G AP +
Sbjct: 72 PPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSA 131
Query: 171 RNWNPPLLGNLPDDFLRILPQQLDSIQGNAGG---------------PKPGSGEGCPPAM 215
PP G P P ++ G P+ G P A+
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAV 191
Query: 216 AGPGPGDQE 224
GPGPG ++
Sbjct: 192 PGPGPGPKQ 200
>gi|21362096 hypothetical protein LOC64773 [Homo sapiens]
Length = 454
Score = 35.8 bits (81), Expect = 0.067
Identities = 32/103 (31%), Positives = 38/103 (36%), Gaps = 24/103 (23%)
Query: 127 PPPVYSPPAYHMHVFDRPYPLAPPTPPPRIDALGS------GAPTSQRRYRNWNPPLLGN 180
PPP PP PYPL P+PPP L G P + N+NP
Sbjct: 313 PPPSSLPPPMPF-----PYPLPQPSPPPLFPPLPQDTPFFPGQPFPPHEFFNYNP----- 362
Query: 181 LPDDFLRILPQQLDSIQGNAGGPKPGSGEGCPPAMAGPGPGDQ 223
+DF +P L G P P PP + GP P Q
Sbjct: 363 -VEDF--SMPPHLGCGPGVNFVPGP-----LPPPIPGPNPHGQ 397
>gi|38570105 Ras-interacting protein 1 [Homo sapiens]
Length = 963
Score = 35.4 bits (80), Expect = 0.088
Identities = 45/186 (24%), Positives = 70/186 (37%), Gaps = 43/186 (23%)
Query: 198 GNAGGPKPGSGEGC------------PPAMAGPGPGDQESRWKQYLEDERIALFLQN--- 242
G AG P G GE PA AG G G+ + + L D L +Q
Sbjct: 184 GLAGSPGGGPGESSCVDAFALCDALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQELWR 243
Query: 243 --EEFMKELQ-RNRDFLLALERDRL-----------KYESQKSKSSSVAVGNDFGFSSPV 288
+ + + R R+ LE++ + QK++S + + G +SP
Sbjct: 244 ARPGWARRFELRGREEARRLEQEAFGAADSEGTGAPSWRPQKNRSRAASGGA--ALASPG 301
Query: 289 PGTGDANPAVSEDALFRDKLKHMGKSTRRKLFELARAFSEKTKMRKSKRKHLLKHQSLGA 348
PGTG PA S G R + L R+ SE + + +R+ + Q+L
Sbjct: 302 PGTGSGAPAGS------------GGKERSENLSLRRSVSELSLQGRRRRQQERRQQALSM 349
Query: 349 AASTAN 354
A A+
Sbjct: 350 APGAAD 355
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 35.4 bits (80), Expect = 0.088
Identities = 44/191 (23%), Positives = 71/191 (37%), Gaps = 18/191 (9%)
Query: 89 LEGGGSSGGVYEDSSDSEDSIPPEILERTLEPDSSDEEPPPVYSPPAYHMHVFDRPYPLA 148
+E G ++ G ++ S+ R +P+ + PP P M P +
Sbjct: 70 MESGPNNHGNFQGDSN---------FNRMWQPEWGMHQQPPHPPPDQPWMPPTPGPMDIV 120
Query: 149 PPTPPPRIDALGSGAPTSQRRYRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPKPGS- 207
PP+ G AP ++ + N N G PD+F Q D G A GP G
Sbjct: 121 PPSEDSNSQDSGEFAPDNRHIF-NQNNHNFGGPPDNFAVGPVNQFDYQHGAAFGPPQGGF 179
Query: 208 ----GEGCPPAMAGPGPGDQESRWKQYLEDER--IALFLQNEEFMKELQRNRDFLLALER 261
+ PP P P ++ R + + +R IAL ++ E + + R +
Sbjct: 180 HPPYWQPGPPGPPAP-PQNRRERPSSFRDRQRSPIALPVKQEPPQIDAVKRRTLPAWIRE 238
Query: 262 DRLKYESQKSK 272
K E +K K
Sbjct: 239 GLEKMEREKQK 249
Score = 28.9 bits (63), Expect = 8.2
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 241 QNEEFMKELQRNRDFLLALERDRLKYESQK----SKSSSVAV---GNDFGFSSPVPGTGD 293
Q++ K+ + +DF + + DRLK + + S+S S++V +D S T D
Sbjct: 688 QDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKD 747
Query: 294 ANPAVSEDALFRDKLKHMGKSTRRKLFELARAFSEKT-KMRKSKRKHLLKHQS 345
+ D+ R + G S +K + + S K ++S +K KH+S
Sbjct: 748 SKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSVEKSQRSGKKASRKHKS 800
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 35.4 bits (80), Expect = 0.088
Identities = 44/191 (23%), Positives = 71/191 (37%), Gaps = 18/191 (9%)
Query: 89 LEGGGSSGGVYEDSSDSEDSIPPEILERTLEPDSSDEEPPPVYSPPAYHMHVFDRPYPLA 148
+E G ++ G ++ S+ R +P+ + PP P M P +
Sbjct: 70 MESGPNNHGNFQGDSN---------FNRMWQPEWGMHQQPPHPPPDQPWMPPTPGPMDIV 120
Query: 149 PPTPPPRIDALGSGAPTSQRRYRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGPKPGS- 207
PP+ G AP ++ + N N G PD+F Q D G A GP G
Sbjct: 121 PPSEDSNSQDSGEFAPDNRHIF-NQNNHNFGGPPDNFAVGPVNQFDYQHGAAFGPPQGGF 179
Query: 208 ----GEGCPPAMAGPGPGDQESRWKQYLEDER--IALFLQNEEFMKELQRNRDFLLALER 261
+ PP P P ++ R + + +R IAL ++ E + + R +
Sbjct: 180 HPPYWQPGPPGPPAP-PQNRRERPSSFRDRQRSPIALPVKQEPPQIDAVKRRTLPAWIRE 238
Query: 262 DRLKYESQKSK 272
K E +K K
Sbjct: 239 GLEKMEREKQK 249
Score = 28.9 bits (63), Expect = 8.2
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 241 QNEEFMKELQRNRDFLLALERDRLKYESQK----SKSSSVAV---GNDFGFSSPVPGTGD 293
Q++ K+ + +DF + + DRLK + + S+S S++V +D S T D
Sbjct: 688 QDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKD 747
Query: 294 ANPAVSEDALFRDKLKHMGKSTRRKLFELARAFSEKT-KMRKSKRKHLLKHQS 345
+ D+ R + G S +K + + S K ++S +K KH+S
Sbjct: 748 SKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSVEKSQRSGKKASRKHKS 800
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 35.0 bits (79), Expect = 0.11
Identities = 43/142 (30%), Positives = 50/142 (35%), Gaps = 21/142 (14%)
Query: 90 EGGGSSGGVYEDSSDSEDSIPPEILERTLEPDSSDEEPPPVYSPPAYHMHVFDRPYPLAP 149
+G G SG S S DS P L + + P S PP PP+ + P P
Sbjct: 71 DGMGDSGR----DSRSPDSSSPNPLPQGVPPPS----PPGPPLPPSTAPSLGGSGAPPPP 122
Query: 150 PTPPPRIDALGSGAP--TSQRRYRNWNPPLLGNLPDDFLRILPQQLDSIQGNAGGP---- 203
P PPP LGS P +S PP S+ G GP
Sbjct: 123 PMPPP---PLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDV 179
Query: 204 KPG----SGEGCPPAMAGPGPG 221
KP G CPP GPG G
Sbjct: 180 KPPVLGVRGLHCPPPPGGPGAG 201
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,107,495
Number of Sequences: 37866
Number of extensions: 1173223
Number of successful extensions: 10666
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 296
Number of HSP's that attempted gapping in prelim test: 8398
Number of HSP's gapped (non-prelim): 2089
length of query: 386
length of database: 18,247,518
effective HSP length: 104
effective length of query: 282
effective length of database: 14,309,454
effective search space: 4035266028
effective search space used: 4035266028
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.