Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM113A Sequence: fasta or formatted (454aa) NCBI GI: 21362096
Description:

hypothetical protein LOC64773

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         18           2
 C cysteine            1.8          8           1
 D aspartate           5.1         23           1
 E glutamate           5.3         24           2
 F phenylalanine       5.3         24           2
 G glycine             7.5         34           2
 H histidine           6.4         29           2
 I isoleucine          1.8          8           2
 K lysine              1.5          7           1
 L leucine            11.9         54           3
 M methionine          2.4         11           1
 N asparagine          2.6         12           1
 P proline            12.6         57           4
 Q glutamine           4.8         22           2
 R arginine            7.0         32           2
 S serine              5.7         26           2
 T threonine           2.4         11           1
 V valine              6.8         31           2
 W tryptophan          1.8          8           1
 Y tyrosine            3.3         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC64773 
FAM113B               0.390   hypothetical protein LOC91523 
FMN1                  0.039   formin 1 
SF3B4                 0.036   splicing factor 3b, subunit 4 
CCNK                  0.032   cyclin K isoform 1 
CPSF6                 0.031   cleavage and polyadenylation specific factor 6, 68 ...
C6orf132              0.030   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.030   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.030   PREDICTED: hypothetical protein LOC647024 
SETD1B                0.030   SET domain containing 1B 
PDCD7                 0.029   programmed cell death 7 
WASF2                 0.028   WAS protein family, member 2 
WIPF3                 0.028   WAS/WASL interacting protein family, member 3 [Homo...
FMNL1                 0.028   formin-like 1 
MYST3                 0.027   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.027   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.027   MYST histone acetyltransferase (monocytic leukemia)...
SMR3A                 0.027   submaxillary gland androgen regulated protein 3 homo...
PRCC                  0.027   papillary renal cell carcinoma translocation-associa...
PRCC                  0.027   papillary renal cell carcinoma translocation-associa...
WBP11                 0.026   WW domain binding protein 11 
PRR12                 0.026   proline rich 12 
WASL                  0.026   Wiskott-Aldrich syndrome gene-like protein 
SF3A2                 0.026   splicing factor 3a, subunit 2 
BRD4                  0.026   bromodomain-containing protein 4 isoform long 
PTPN23                0.025   protein tyrosine phosphatase, non-receptor type 23 [...
VASP                  0.025   vasodilator-stimulated phosphoprotein 
SFRS15                0.025   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.025   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.025   splicing factor, arginine/serine-rich 15 isoform 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press