Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 14150005
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14150005 zinc and ring finger protein 1 [Homo sapiens]
(227 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14150005 zinc and ring finger protein 1 [Homo sapiens] 482 e-136
gi|23821044 zinc finger/RING finger 2 [Homo sapiens] 195 3e-50
gi|37595553 ring finger protein 111 [Homo sapiens] 52 5e-07
gi|7657520 ring finger protein 11 [Homo sapiens] 51 7e-07
gi|57165361 ring finger protein 165 [Homo sapiens] 51 7e-07
gi|239749332 PREDICTED: hypothetical protein XP_002347002 [Homo ... 50 2e-06
gi|239743424 PREDICTED: hypothetical protein XP_002342853 [Homo ... 50 2e-06
gi|29788758 ring finger protein 130 [Homo sapiens] 50 2e-06
gi|58331204 ring finger protein 150 [Homo sapiens] 48 6e-06
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 47 1e-05
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 47 1e-05
gi|29789407 ring finger protein 149 [Homo sapiens] 47 1e-05
gi|150170725 zinc and ring finger 4 [Homo sapiens] 47 1e-05
gi|27436927 synoviolin 1 isoform b [Homo sapiens] 47 1e-05
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 47 1e-05
gi|150378447 zinc and ring finger 3 [Homo sapiens] 47 1e-05
gi|56711322 ring finger protein 43 [Homo sapiens] 47 1e-05
gi|37588873 ring finger protein 128 isoform 1 [Homo sapiens] 46 2e-05
gi|37588871 ring finger protein 128 isoform 2 [Homo sapiens] 46 2e-05
gi|7662486 ring finger protein 44 [Homo sapiens] 46 3e-05
gi|37675277 ring finger protein 148 [Homo sapiens] 45 4e-05
gi|14149702 ring finger protein 167 [Homo sapiens] 45 7e-05
gi|5174653 ring finger protein 6 [Homo sapiens] 44 1e-04
gi|34305295 ring finger protein 6 [Homo sapiens] 44 1e-04
gi|34305293 ring finger protein 6 [Homo sapiens] 44 1e-04
gi|21040269 ring finger protein 133 [Homo sapiens] 44 1e-04
gi|38045931 ring finger protein 122 [Homo sapiens] 44 1e-04
gi|34577087 ring finger protein 13 [Homo sapiens] 43 2e-04
gi|6005864 ring finger protein 13 [Homo sapiens] 43 2e-04
gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens] 43 2e-04
>gi|14150005 zinc and ring finger protein 1 [Homo sapiens]
Length = 227
Score = 482 bits (1240), Expect = e-136
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MGGKQSTAARSRGPFPGVSTDDSAVPPPGGAPHFGHYRTGGGAMGLRSRSVSSVAGMGMD 60
MGGKQSTAARSRGPFPGVSTDDSAVPPPGGAPHFGHYRTGGGAMGLRSRSVSSVAGMGMD
Sbjct: 1 MGGKQSTAARSRGPFPGVSTDDSAVPPPGGAPHFGHYRTGGGAMGLRSRSVSSVAGMGMD 60
Query: 61 PSTAGGVPFGLYTPASRGTGDSERAPGGGGSASDSTYAHGNGYQETGGGHHRDGMLYLGS 120
PSTAGGVPFGLYTPASRGTGDSERAPGGGGSASDSTYAHGNGYQETGGGHHRDGMLYLGS
Sbjct: 61 PSTAGGVPFGLYTPASRGTGDSERAPGGGGSASDSTYAHGNGYQETGGGHHRDGMLYLGS 120
Query: 121 RASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEMHFIMCLSKPRLSYNDDVLTKD 180
RASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEMHFIMCLSKPRLSYNDDVLTKD
Sbjct: 121 RASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEMHFIMCLSKPRLSYNDDVLTKD 180
Query: 181 AGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPAD 227
AGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPAD
Sbjct: 181 AGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPAD 227
>gi|23821044 zinc finger/RING finger 2 [Homo sapiens]
Length = 242
Score = 195 bits (495), Expect = 3e-50
Identities = 111/247 (44%), Positives = 137/247 (55%), Gaps = 25/247 (10%)
Query: 1 MGGKQSTAARSRGPFPGVSTDDSAVPPPGGAPHFGHYRTGGGAMGLRSRSVSSVAGMGMD 60
MG KQS A + G S D GGA G GGGA + +
Sbjct: 1 MGAKQSGPAAANGRTRAYSGSDLPSSSSGGAN--GTAGGGGGARAAAAGRFPAQVPSAHQ 58
Query: 61 PSTAGGV------PFGLYTPASRGTGDSERAPGGGGSASDSTYAHGN------GYQET-- 106
PS +GG P P SR G + + G A+ S ++ N G Q++
Sbjct: 59 PSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVH 118
Query: 107 ------GGGHHRDGMLYLGSRASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEMH 160
GGG R G + +LP H++P F GFKCP+CSK V+SDEM++H
Sbjct: 119 SSPEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFG---GFKCPVCSKFVSSDEMDLH 175
Query: 161 FIMCLSKPRLSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRS 220
+MCL+KPR++YN+DVL+KDAGEC ICLEEL QGDTIARLPCLCIYHK CID WFEVNRS
Sbjct: 176 LVMCLTKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRS 235
Query: 221 CPEHPAD 227
CPEHP+D
Sbjct: 236 CPEHPSD 242
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 51.6 bits (122), Expect = 5e-07
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 183 ECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
+C ICL L +G+ + RLPC+ ++H+ C+D W N+ CP
Sbjct: 933 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCP 972
>gi|7657520 ring finger protein 11 [Homo sapiens]
Length = 154
Score = 51.2 bits (121), Expect = 7e-07
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 179 KDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
K ECVIC+ + + GD I LPC+ IYH CID W + +CP
Sbjct: 94 KKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCP 137
>gi|57165361 ring finger protein 165 [Homo sapiens]
Length = 346
Score = 51.2 bits (121), Expect = 7e-07
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 179 KDAGE-------CVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
KD GE C ICL L G+ + RLPC+ ++H+ C+D W +++ CP
Sbjct: 282 KDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCP 332
>gi|239749332 PREDICTED: hypothetical protein XP_002347002 [Homo
sapiens]
Length = 183
Score = 49.7 bits (117), Expect = 2e-06
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 159 MHFIMCLSKPRLSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVN 218
+ + CL + D ++ ECVICL E + GD I LPC +H CID+W +
Sbjct: 63 LSLLQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRS 122
Query: 219 RSCP 222
+CP
Sbjct: 123 FTCP 126
>gi|239743424 PREDICTED: hypothetical protein XP_002342853 [Homo
sapiens]
Length = 183
Score = 49.7 bits (117), Expect = 2e-06
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 159 MHFIMCLSKPRLSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVN 218
+ + CL + D ++ ECVICL E + GD I LPC +H CID+W +
Sbjct: 63 LSLLQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRS 122
Query: 219 RSCP 222
+CP
Sbjct: 123 FTCP 126
>gi|29788758 ring finger protein 130 [Homo sapiens]
Length = 419
Score = 49.7 bits (117), Expect = 2e-06
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 180 DAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
D C +C+E Q D + LPC ++HKSC+D W + +CP
Sbjct: 260 DFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEHCTCP 302
>gi|58331204 ring finger protein 150 [Homo sapiens]
Length = 438
Score = 48.1 bits (113), Expect = 6e-06
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 174 DDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
D D C +C+E D + LPC ++HKSC+D W +R+CP
Sbjct: 268 DKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCP 316
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 47.4 bits (111), Expect = 1e-05
Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 18/188 (9%)
Query: 48 SRSVSSVAGMGMDPSTA----GGVPFGLYTPASRGTGDSERAPGGGGSASDSTYAHGNGY 103
S SV+ M+ + + GG G + +S + S + S+S + + G
Sbjct: 426 SEPTGSVSNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGES 485
Query: 104 QETGGG---HHRDGMLYLGSRASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEMH 160
ET +G GS + + H AP F ++ +E +
Sbjct: 486 SETSSDLFEGSNEGSSSSGSSGARREGR--HRAPVTFDESGSLPFLSLAQFFLLNEDDDD 543
Query: 161 FIMCLSKPRLSYNDDVLTKDAGE------CVICLEELLQGDTIARLPCLCIYHKSCIDSW 214
L+K ++ D++ + GE C +C+ E +G+ + +LPC YH CID W
Sbjct: 544 QPRGLTKEQI---DNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRW 600
Query: 215 FEVNRSCP 222
N +CP
Sbjct: 601 LSENSTCP 608
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 47.4 bits (111), Expect = 1e-05
Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 18/188 (9%)
Query: 48 SRSVSSVAGMGMDPSTA----GGVPFGLYTPASRGTGDSERAPGGGGSASDSTYAHGNGY 103
S SV+ M+ + + GG G + +S + S + S+S + + G
Sbjct: 426 SEPTGSVSNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGES 485
Query: 104 QETGGG---HHRDGMLYLGSRASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEMH 160
ET +G GS + + H AP F ++ +E +
Sbjct: 486 SETSSDLFEGSNEGSSSSGSSGARREGR--HRAPVTFDESGSLPFLSLAQFFLLNEDDDD 543
Query: 161 FIMCLSKPRLSYNDDVLTKDAGE------CVICLEELLQGDTIARLPCLCIYHKSCIDSW 214
L+K ++ D++ + GE C +C+ E +G+ + +LPC YH CID W
Sbjct: 544 QPRGLTKEQI---DNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRW 600
Query: 215 FEVNRSCP 222
N +CP
Sbjct: 601 LSENSTCP 608
>gi|29789407 ring finger protein 149 [Homo sapiens]
Length = 400
Score = 47.4 bits (111), Expect = 1e-05
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 180 DAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
DA C +C+E D I LPC I+H+ CID W +R+CP
Sbjct: 265 DAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLDHRTCP 307
>gi|150170725 zinc and ring finger 4 [Homo sapiens]
Length = 429
Score = 47.4 bits (111), Expect = 1e-05
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 184 CVICLEELLQGDTIARLPCLCIYHKSCIDSWFE--VNRSCP 222
C ICL+E +GD + LPC YH CID WF RSCP
Sbjct: 309 CAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCP 349
>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
Length = 617
Score = 47.0 bits (110), Expect = 1e-05
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 184 CVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
C+IC EE++ G RLPC I+H SC+ SWF+ ++CP
Sbjct: 291 CIICREEMVTG--AKRLPCNHIFHTSCLRSWFQRQQTCP 327
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 47.0 bits (110), Expect = 1e-05
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 184 CVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
C+IC EE++ G RLPC I+H SC+ SWF+ ++CP
Sbjct: 291 CIICREEMVTG--AKRLPCNHIFHTSCLRSWFQRQQTCP 327
>gi|150378447 zinc and ring finger 3 [Homo sapiens]
Length = 836
Score = 47.0 bits (110), Expect = 1e-05
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 174 DDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
D + + +C ICLE+ + G+ + +PC +H+ C+D W + +CP
Sbjct: 183 DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCP 231
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 47.0 bits (110), Expect = 1e-05
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 184 CVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
C ICLEE +G + + CL +H++C+D W +R+CP
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCP 310
>gi|37588873 ring finger protein 128 isoform 1 [Homo sapiens]
Length = 428
Score = 46.2 bits (108), Expect = 2e-05
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 170 LSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
L D + D C +C+E D + L C I+HK+C+D W +R+CP
Sbjct: 263 LKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCP 315
>gi|37588871 ring finger protein 128 isoform 2 [Homo sapiens]
Length = 402
Score = 46.2 bits (108), Expect = 2e-05
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 170 LSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
L D + D C +C+E D + L C I+HK+C+D W +R+CP
Sbjct: 237 LKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCP 289
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 45.8 bits (107), Expect = 3e-05
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 168 PRLSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPAD 227
P +N D + CV+C + + LPC +H C+D W + NR+CP AD
Sbjct: 364 PSYRFNPDSHQSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRAD 423
>gi|37675277 ring finger protein 148 [Homo sapiens]
Length = 305
Score = 45.4 bits (106), Expect = 4e-05
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 170 LSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
L D+ L + CV+C + D + L C +HK+CID W +R+CP
Sbjct: 244 LKEGDEELDLNEDNCVVCFDTYKPQDVVRILTCKHFFHKACIDPWLLAHRTCP 296
>gi|14149702 ring finger protein 167 [Homo sapiens]
Length = 350
Score = 44.7 bits (104), Expect = 7e-05
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 184 CVICLEELLQGDTIARLPCLCIYHKSCIDSWF-EVNRSCP 222
C ICL+E GD + LPC YH C+D W + ++CP
Sbjct: 230 CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCP 269
>gi|5174653 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 43.9 bits (102), Expect = 1e-04
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 172 YNDDVLTKDAGE-CVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
Y + + + G+ C +C+ + + G+ + +LPC+ +H CID W N +CP
Sbjct: 619 YEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCP 670
>gi|34305295 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 43.9 bits (102), Expect = 1e-04
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 172 YNDDVLTKDAGE-CVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
Y + + + G+ C +C+ + + G+ + +LPC+ +H CID W N +CP
Sbjct: 619 YEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCP 670
>gi|34305293 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 43.9 bits (102), Expect = 1e-04
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 172 YNDDVLTKDAGE-CVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
Y + + + G+ C +C+ + + G+ + +LPC+ +H CID W N +CP
Sbjct: 619 YEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCP 670
>gi|21040269 ring finger protein 133 [Homo sapiens]
Length = 376
Score = 43.9 bits (102), Expect = 1e-04
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 174 DDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCP 222
D+ + + CVIC E D + L C +HK+CID W + +CP
Sbjct: 246 DEEINPNGDSCVICFERYKPNDIVRILTCKHFFHKNCIDPWILPHGTCP 294
>gi|38045931 ring finger protein 122 [Homo sapiens]
Length = 155
Score = 43.9 bits (102), Expect = 1e-04
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 169 RLSYNDDVLTKDAGE-------CVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSC 221
R Y + VL DA + C +CLE+ D + LPC +H+ C+ W EV C
Sbjct: 71 RYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVC 130
Query: 222 P 222
P
Sbjct: 131 P 131
>gi|34577087 ring finger protein 13 [Homo sapiens]
Length = 381
Score = 43.1 bits (100), Expect = 2e-04
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 184 CVICLEELLQGDTIARLPCLCIYHKSCIDSWF-EVNRSCP 222
C ICL+E GD + LPC YH C+D W + ++CP
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
>gi|6005864 ring finger protein 13 [Homo sapiens]
Length = 381
Score = 43.1 bits (100), Expect = 2e-04
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 184 CVICLEELLQGDTIARLPCLCIYHKSCIDSWF-EVNRSCP 222
C ICL+E GD + LPC YH C+D W + ++CP
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
>gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 43.1 bits (100), Expect = 2e-04
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 168 PRLSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPAD 227
P +N + + CV+C+ + + LPC +H C+D W + NR+CP AD
Sbjct: 364 PSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 423
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,412,820
Number of Sequences: 37866
Number of extensions: 646493
Number of successful extensions: 3442
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 2938
Number of HSP's gapped (non-prelim): 554
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.