Guide to the Human Genome
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Name: RNF11 Sequence: fasta or formatted (154aa) NCBI GI: 7657520
Description:

ring finger protein 11

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2          5           2
 C cysteine            4.5          7           1
 D aspartate           7.8         12           2
 E glutamate           7.8         12           3
 F phenylalanine       2.6          4           1
 G glycine             5.2          8           1
 H histidine           3.2          5           1
 I isoleucine          6.5         10           1
 K lysine              2.6          4           2
 L leucine             7.8         12           2
 M methionine          3.9          6           2
 N asparagine          1.3          2           1
 P proline            10.4         16           4
 Q glutamine           5.8          9           1
 R arginine            5.2          8           1
 S serine              7.8         12           2
 T threonine           5.2          8           1
 V valine              4.5          7           1
 W tryptophan          0.6          1           1
 Y tyrosine            3.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 11 
LOC100290625          0.516   PREDICTED: hypothetical protein XP_002347002 
LOC100289630          0.516   PREDICTED: hypothetical protein XP_002342853 
RNF38                 0.128   ring finger protein 38 isoform 2 
RNF38                 0.128   ring finger protein 38 isoform 2 
RNF38                 0.128   ring finger protein 38 isoform 3 
RNF38                 0.128   ring finger protein 38 isoform 2 
RNF38                 0.128   ring finger protein 38 isoform 1 
RNF6                  0.125   ring finger protein 6 
RNF6                  0.125   ring finger protein 6 
RNF6                  0.125   ring finger protein 6 
RNF111                0.115   ring finger protein 111 
RNF44                 0.115   ring finger protein 44 
RLIM                  0.109   ring finger protein, LIM domain interacting 
RLIM                  0.109   ring finger protein, LIM domain interacting 
RNF149                0.109   ring finger protein 149 
ZNRF3                 0.102   zinc and ring finger 3 
RNF167                0.102   ring finger protein 167 
RNF165                0.099   ring finger protein 165 
RNF13                 0.095   ring finger protein 13 
RNF13                 0.095   ring finger protein 13 
RNF150                0.095   ring finger protein 150 
RNF130                0.095   ring finger protein 130 
RNF215                0.092   ring finger protein 215 
RNF43                 0.089   ring finger protein 43 
ZNRF1                 0.086   zinc and ring finger protein 1 
RNF128                0.086   ring finger protein 128 isoform 1 
RNF128                0.086   ring finger protein 128 isoform 2 
ZNRF4                 0.086   zinc and ring finger 4 
DZIP3                 0.082   DAZ interacting protein 3, zinc finger 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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