Guide to the Human Genome
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Name: C19orf44 Sequence: fasta or formatted (657aa) NCBI GI: 14149902
Description:

hypothetical protein LOC84167

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         74           2
 C cysteine            0.3          2           1
 D aspartate           5.8         38           2
 E glutamate           8.2         54           4
 F phenylalanine       2.4         16           1
 G glycine             3.5         23           2
 H histidine           2.6         17           1
 I isoleucine          2.6         17           1
 K lysine              5.2         34           3
 L leucine             9.0         59           3
 M methionine          2.1         14           1
 N asparagine          3.5         23           2
 P proline             5.8         38           2
 Q glutamine           4.9         32           2
 R arginine            6.1         40           1
 S serine             13.9         91           4
 T threonine           6.5         43           2
 V valine              5.0         33           1
 W tryptophan          0.3          2           1
 Y tyrosine            1.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84167 
DSPP                  0.028   dentin sialophosphoprotein preproprotein 
TCOF1                 0.023   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.023   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.023   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.023   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.023   Treacher Collins-Franceschetti syndrome 1 isoform a ...
HECW2                 0.020   HECT, C2 and WW domain containing E3 ubiquitin prote...
MUC4                  0.020   mucin 4 isoform a 
RTF1                  0.020   Paf1/RNA polymerase II complex component 
MUC3A                 0.019   PREDICTED: mucin 3A, cell surface associated, parti...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform c ...
LOC100134138          0.019   PREDICTED: similar to mucin, partial 
IWS1                  0.019   IWS1 homolog 
AP3B2                 0.018   adaptor-related protein complex 3, beta 2 subunit [H...
CDKN2AIP              0.016   CDKN2A interacting protein 
MAP1B                 0.016   microtubule-associated protein 1B 
C3orf30               0.016   hypothetical protein LOC152405 
LOC100133408          0.015   PREDICTED: similar to mucin 
LOC100294249          0.015   PREDICTED: hypothetical protein XP_002344067 
NOLC1                 0.015   nucleolar and coiled-body phosphoprotein 1 
DMP1                  0.014   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.014   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
LOC729792             0.014   PREDICTED: hypothetical protein 
LOC729792             0.014   PREDICTED: hypothetical protein 
LOC729792             0.014   PREDICTED: hypothetical protein 
LOC100294501          0.014   PREDICTED: hypothetical protein 
LOC100294238          0.014   PREDICTED: hypothetical protein 
LOC100294204          0.014   PREDICTED: hypothetical protein 
LOC100294136          0.014   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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