Search of human proteins with 14149728

Search of human proteins with 14149728

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14149728 BarH-like homeobox 1 [Homo sapiens]
         (327 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14149728 BarH-like homeobox 1 [Homo sapiens]                       660   0.0  
gi|39930383 BarH-like homeobox 2 [Homo sapiens]                       313   1e-85
gi|116805350 homeo box (H6 family) 1 [Homo sapiens]                    95   7e-20
gi|27886557 msh homeobox 2 [Homo sapiens]                              92   5e-19
gi|6633798 BarH-like homeobox 2 [Homo sapiens]                         92   5e-19
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  92   8e-19
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  89   7e-18
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]                89   7e-18
gi|19923352 NK3 homeobox 1 [Homo sapiens]                              87   2e-17
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]      87   2e-17
gi|4885185 distal-less homeobox 3 [Homo sapiens]                       86   4e-17
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]          86   4e-17
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]                   86   6e-17
gi|226437602 NK1 homeobox 2 [Homo sapiens]                             85   8e-17
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  85   8e-17
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  85   8e-17
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  85   8e-17
gi|153218470 BarH-like homeobox 1 [Homo sapiens]                       85   1e-16
gi|157743259 H6 family homeobox 3 [Homo sapiens]                       84   1e-16
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]                   84   1e-16
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho...    83   4e-16
gi|70608170 H6 family homeobox 2 [Homo sapiens]                        82   6e-16
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]                  82   6e-16
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]                 81   1e-15
gi|63054872 ladybird homeobox 1 [Homo sapiens]                         81   1e-15
gi|84105335 mesenchyme homeobox 2 [Homo sapiens]                       80   2e-15
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]                  80   2e-15
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]                  80   2e-15
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]                  80   2e-15
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]                  80   2e-15

>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
          Length = 327

 Score =  660 bits (1702), Expect = 0.0
 Identities = 327/327 (100%), Positives = 327/327 (100%)

Query: 1   MEGSNGFGIDSILSHRAGSPALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLE 60
           MEGSNGFGIDSILSHRAGSPALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLE
Sbjct: 1   MEGSNGFGIDSILSHRAGSPALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLE 60

Query: 61  TGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQP 120
           TGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQP
Sbjct: 61  TGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQP 120

Query: 121 AAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRK 180
           AAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRK
Sbjct: 121 AAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRK 180

Query: 181 ARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVG 240
           ARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVG
Sbjct: 181 ARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVG 240

Query: 241 LELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRILI 300
           LELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRILI
Sbjct: 241 LELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRILI 300

Query: 301 HGLQGASEPPPPLPPLAGVLPRAAQPR 327
           HGLQGASEPPPPLPPLAGVLPRAAQPR
Sbjct: 301 HGLQGASEPPPPLPPLAGVLPRAAQPR 327


>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
          Length = 387

 Score =  313 bits (803), Expect = 1e-85
 Identities = 203/389 (52%), Positives = 237/389 (60%), Gaps = 66/389 (16%)

Query: 1   MEGSNG--FGIDSILSHRA-GSPALPKGD--PL----LGDCRSPLELSPRSESSSDCSSP 51
           MEG++G  FGID+ILS  + GSP +  GD  PL      D RS    SP SE  +  ++P
Sbjct: 3   MEGASGSSFGIDTILSSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGTAP 62

Query: 52  ASPGRDCLETGTPR--------------------PGGASGPGLDSHLQ------------ 79
           +SP    +E   P                     P  A    L    Q            
Sbjct: 63  SSPISVTMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQPPP 122

Query: 80  --PGQL-SAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQPAAPEPGGRLAAKAA-- 134
             P QL SA +  RT TSSFLI+DIL D KPLAACAPYS+S   ++P    +  + A   
Sbjct: 123 PPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTS--VSSPHHTPKQESNAVHE 180

Query: 135 --------EDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRKARTAFT 186
                   ED + KLDK   + S    +  KEEGDREI+SSR+SPPVR KKPRKARTAF+
Sbjct: 181 SFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFS 240

Query: 187 DHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246
           DHQL QLERSFERQKYLSVQDRM+LAA+LNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE
Sbjct: 241 DHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 300

Query: 247 AGNYSALQRMFPSPYFYPQSLVSNLD------PGAALY--LYRGPSAPPPALQRPLVPRI 298
           AGNYSALQRMFPSPYFY  SL+ ++D        AA+Y  +YR P AP P LQRPLVPR+
Sbjct: 301 AGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVPRV 360

Query: 299 LIHGLQGASEPPPPLPPLAGVLPRAAQPR 327
           LIHGL    +  P L PL+  +P    PR
Sbjct: 361 LIHGLGPGGQ--PALNPLSSPIPGTPHPR 387


>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
          Length = 348

 Score = 95.1 bits (235), Expect = 7e-20
 Identities = 77/209 (36%), Positives = 101/209 (48%), Gaps = 30/209 (14%)

Query: 120 PAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPR 179
           P  P PG  +  +AAE     L   G  A ++   ++ E        +R    V   + +
Sbjct: 152 PRGPGPGA-VQREAAE-----LAARGPAAGTEEASELAEV-PAAAGETRGGVGVGGGRKK 204

Query: 180 KARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAV 239
           K RT F+  Q+ QLE +F+ ++YLS  +R  LAASL LT+TQVK W+QNRR KWKRQ A 
Sbjct: 205 KTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAA 264

Query: 240 GLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRIL 299
            LE  A + +    QR+   P  Y +S      P AA       + PP  L  PL P   
Sbjct: 265 ELE--AASLSPPGAQRLVRVPVLYHES-----PPAAA------AAGPPATLPFPLAP--- 308

Query: 300 IHGLQGASEPPPPLPPLAGVL--PRAAQP 326
                 A  PPPPL   +G L  P AA P
Sbjct: 309 -----AAPAPPPPLLGFSGALAYPLAAFP 332


>gi|27886557 msh homeobox 2 [Homo sapiens]
          Length = 267

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 89/263 (33%), Positives = 117/263 (44%), Gaps = 38/263 (14%)

Query: 53  SPGRDCLETGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSS---FLIRDILADCKPLA 109
           S G D        P   +GPG      PG     A+ R V  S   F +  +++D KP  
Sbjct: 5   SKGNDLFSPDEEGPAVVAGPGPG----PGGAEGAAEERRVKVSSLPFSVEALMSDKKPPK 60

Query: 110 ACAPY----SSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREIS 165
             +P     +S+G    P       A+ A      L K    AS  SE    E+G   + 
Sbjct: 61  EASPLPAESASAGATLRPLLLSGHGAREAHS-PGPLVKPFETASVKSENS--EDGAAWMQ 117

Query: 166 S-SRDSPPVRLKKP-----------RKARTAFTDHQLAQLERSFERQKYLSVQDRMELAA 213
              R SPP R   P           RK RT FT  QL  LER F +++YLS+ +R E ++
Sbjct: 118 EPGRYSPPPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSS 177

Query: 214 SLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDP 273
           SLNLT+TQVK W+QNRR K KR     LE L       A + M PS +  P  + S L  
Sbjct: 178 SLNLTETQVKIWFQNRRAKAKRLQEAELEKLK-----MAAKPMLPSSFSLPFPISSPLQ- 231

Query: 274 GAALYLYRGPSAPPPALQRPLVP 296
            A++Y   G S P     RP++P
Sbjct: 232 AASIY---GASYP---FHRPVLP 248


>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
          Length = 279

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 43/75 (57%), Positives = 53/75 (70%)

Query: 166 SSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTW 225
           S  + P  R KKPR++RT FT+ QL  LE+ F++QKYLS  DR++LA SL LT  QVKTW
Sbjct: 121 SETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTW 180

Query: 226 YQNRRTKWKRQTAVG 240
           YQNRR KWK+    G
Sbjct: 181 YQNRRMKWKKMVLKG 195


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score = 91.7 bits (226), Expect = 8e-19
 Identities = 74/217 (34%), Positives = 91/217 (41%), Gaps = 35/217 (16%)

Query: 110 ACAPYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRD 169
           A AP      P AP P G  AA                    +    K +  R  S S+ 
Sbjct: 610 AAAPGPRENSPVAPGPPGGAAAPGG----------AGTTPQGTATAAKPKRKRTGSDSKS 659

Query: 170 SPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNR 229
                  KPR+ARTAFT  QL  LE  F+  +YLSV +R+ LA SL+LT+TQVK W+QNR
Sbjct: 660 G------KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNR 713

Query: 230 RTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPA 289
           RTKWK+Q   G +  A  G         P P            PG  L     P +P P 
Sbjct: 714 RTKWKKQNP-GADTSAPTGGGGG-----PGP---------GAGPGTGLPGGLSPLSPSPP 758

Query: 290 LQRPLVPRILIHGLQGASEPPPPLPPLAGVLPRAAQP 326
           +  PL     +HG  G     P     A  LP  + P
Sbjct: 759 MGAPLG----MHGPAGYPAHGPGGLVCAAQLPFLSSP 791


>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 653

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 72/214 (33%), Positives = 89/214 (41%), Gaps = 35/214 (16%)

Query: 113 PYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPP 172
           P      P AP P G  AA                    +    K +  R  S S+    
Sbjct: 48  PGPRENSPVAPGPPGGAAAPGG----------AGTTPQGTATAAKPKRKRTGSDSKSG-- 95

Query: 173 VRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTK 232
               KPR+ARTAFT  QL  LE  F+  +YLSV +R+ LA SL+LT+TQVK W+QNRRTK
Sbjct: 96  ----KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 151

Query: 233 WKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQR 292
           WK+Q   G +  A  G         P P            PG  L     P +P P +  
Sbjct: 152 WKKQNP-GADTSAPTGGGGG-----PGP---------GAGPGTGLPGGLSPLSPSPPMGA 196

Query: 293 PLVPRILIHGLQGASEPPPPLPPLAGVLPRAAQP 326
           PL     +HG  G     P     A  LP  + P
Sbjct: 197 PLG----MHGPAGYPAHGPGGLVCAAQLPFLSSP 226


>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
          Length = 411

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 73/217 (33%), Positives = 90/217 (41%), Gaps = 35/217 (16%)

Query: 110 ACAPYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRD 169
           A AP      P A  P G  AA                    +    K +  R  S S+ 
Sbjct: 207 AAAPGPRENSPVAQGPPGGAAAPGG----------AGTTPQGTATAAKPKRKRTGSDSKS 256

Query: 170 SPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNR 229
                  KPR+ARTAFT  QL  LE  F+  +YLSV +R+ LA SL+LT+TQVK W+QNR
Sbjct: 257 G------KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNR 310

Query: 230 RTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPA 289
           RTKWK+Q   G +  A  G         P P            PG  L     P +P P 
Sbjct: 311 RTKWKKQNP-GADTSAPTGGGGG-----PGP---------GAGPGTGLPGGLSPLSPSPP 355

Query: 290 LQRPLVPRILIHGLQGASEPPPPLPPLAGVLPRAAQP 326
           +  PL     +HG  G     P     A  LP  + P
Sbjct: 356 MGAPLG----MHGPAGYPAHGPGGLVCAAQLPFLSSP 388


>gi|19923352 NK3 homeobox 1 [Homo sapiens]
          Length = 234

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 71/194 (36%), Positives = 93/194 (47%), Gaps = 29/194 (14%)

Query: 59  LETGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSG 118
           L    PRPG A   G          + P  S+ +TS FLI+DIL D          S   
Sbjct: 2   LRVPEPRPGEAKAEGA---------APPTPSKPLTS-FLIQDILRDGAQRQGGRTSSQRQ 51

Query: 119 QPAAPEP-----GGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSR-DSP- 171
           +   PEP     GGR  A A  D   +L      A  ++E   + E +R + S   DS  
Sbjct: 52  RDPEPEPEPEPEGGRSRAGAQND---QLSTGPRAAPEEAETLAETEPERHLGSYLLDSEN 108

Query: 172 --------PVRLKKPRK-ARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQV 222
                   P   K+P+K +R AF+  Q+ +LER F  QKYLS  +R  LA +L LT+TQV
Sbjct: 109 TSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQV 168

Query: 223 KTWYQNRRTKWKRQ 236
           K W+QNRR K KR+
Sbjct: 169 KIWFQNRRYKTKRK 182


>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
          Length = 334

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 75/213 (35%), Positives = 104/213 (48%), Gaps = 27/213 (12%)

Query: 120 PAA--PEPGGRLAAK-AAEDFRDKLDKSGSNASSDSEY------KVKEEGDREISSSRDS 170
           PAA   EP G  +A  AAED     +KS SN+++D +Y      +  +   REI   +  
Sbjct: 40  PAAFLKEPQGAFSASGAAED----CNKSKSNSAADPDYCRRILVRDAKGSIREIILPKG- 94

Query: 171 PPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRR 230
             + L +P++ RT+FT  QL +LE  F+R +Y+  ++R ELA  LNL++TQVK W+QNRR
Sbjct: 95  --LDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRR 152

Query: 231 TKWKRQTAVGLELLA----EAGNYSALQRMFPSPYFYPQSLVSNLDP---GAALYLYRGP 283
           TK K+      EL +     A   S L+ +       P  L + L P   GA     RGP
Sbjct: 153 TKQKKDQGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGP 212

Query: 284 SAPP----PALQRPLVPRILIHGLQGASEPPPP 312
           S P      A            G  GA+ P PP
Sbjct: 213 SLPALGAGAAAGSAAAAAAAAPGPAGAASPHPP 245


>gi|4885185 distal-less homeobox 3 [Homo sapiens]
          Length = 287

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 58/159 (36%), Positives = 78/159 (49%), Gaps = 33/159 (20%)

Query: 156 VKEEGDREISSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASL 215
           VKEE + E+      P    KK RK RT ++ +QLA L+R F++ +YL++ +R ELAA L
Sbjct: 111 VKEEPEAEVRMVNGKP----KKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQL 166

Query: 216 NLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGA 275
            LT TQVK W+QNRR+K+K+    G   L  + N S              S+  N  P  
Sbjct: 167 GLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNS-------------DSMACNSPPSP 213

Query: 276 ALYLYRGPSAPPPALQRPLVPRILIHGLQGASEPPPPLP 314
           AL+     S P PA                 S+ PPPLP
Sbjct: 214 ALWDTSSHSTPAPA----------------RSQLPPPLP 236



 Score = 33.5 bits (75), Expect = 0.26
 Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 35  PLELSPRSESSSDCSSPASPGR-DCLETGTPRPGGAS-GPGLDSHLQPGQLSAPAQSRTV 92
           PLE SP +  S  C+SP SP   D     TP P  +   P L     P  L  P  S   
Sbjct: 194 PLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPPPLPYSASPSYLDDPTNS-WY 252

Query: 93  TSSFLIRDILADCKPLAACAPYSSSGQPAAPEPG 126
            +  L    L    P  A   ++S G P  P PG
Sbjct: 253 HAQNLSGPHLQQQPPQPATLHHASPGPP--PNPG 284


>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
          Length = 365

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 75/253 (29%), Positives = 111/253 (43%), Gaps = 17/253 (6%)

Query: 8   GIDSILSHRAGSPALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLETGTPRPG 67
           G DS+   R  S AL  G    G       ++      ++  +PA PG+     G P   
Sbjct: 3   GRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEG-PAVA 61

Query: 68  GASGPGLD-SHLQPGQLSAPAQSRTVTSSFLIRDILADCKP--LAACAPYSSSGQPAAPE 124
              GPGLD S L  G L        +   F  +   A   P  L A  P+     P  PE
Sbjct: 62  PCPGPGLDGSSLARGALPL---GLGLLCGFGTQPPAAARAPCLLLADVPFLP---PRGPE 115

Query: 125 PGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRKARTA 184
           P   LA         +  +S S ++SD + + ++  D + S     P +  +K R+ RT 
Sbjct: 116 PAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKAS-----PTLGKRKKRRHRTV 170

Query: 185 FTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTA--VGLE 242
           FT HQL +LE++F    Y  V  R  LA    L + +++ W+QNRR KW+++     G  
Sbjct: 171 FTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSS 230

Query: 243 LLAEAGNYSALQR 255
           ++AE G Y A+ R
Sbjct: 231 VMAEYGLYGAMVR 243


>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
          Length = 284

 Score = 85.5 bits (210), Expect = 6e-17
 Identities = 71/209 (33%), Positives = 93/209 (44%), Gaps = 28/209 (13%)

Query: 51  PASPGRDCLETGTPRPGGASG------------------PGLDSHLQPGQLSAPAQSRTV 92
           P S G D + +G   PGG  G                   G   +   G L+    S  V
Sbjct: 16  PISFGIDQILSGPETPGGGLGLGRGGQGHGENGAFSGGYHGASGYGPAGSLAPLPGSSGV 75

Query: 93  TSSFLIRDILADCKPLAACAPYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDS 152
               +IR  +   +PL    P  + G PA P P G   A            SG   + D 
Sbjct: 76  GPGGVIR--VPAHRPLPVPPP--AGGAPAVPGPSGLGGAGGLAGLTFPWMDSGRRFAKDR 131

Query: 153 EYKVKE--EGDREISSS-RDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRM 209
                    G R I    ++  P + KKPR   T+F+  Q+ +LER F RQKYL+  +R 
Sbjct: 132 LTAALSPFSGTRRIGHPYQNRTPPKRKKPR---TSFSRSQVLELERRFLRQKYLASAERA 188

Query: 210 ELAASLNLTDTQVKTWYQNRRTKWKRQTA 238
            LA +L +TD QVKTW+QNRRTKW+RQTA
Sbjct: 189 ALAKALRMTDAQVKTWFQNRRTKWRRQTA 217


>gi|226437602 NK1 homeobox 2 [Homo sapiens]
          Length = 310

 Score = 85.1 bits (209), Expect = 8e-17
 Identities = 55/147 (37%), Positives = 72/147 (48%), Gaps = 39/147 (26%)

Query: 177 KPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQ 236
           KPR+ARTAFT  QL  LE  F   +YLSV +R+ LA SL+LT+TQVK W+QNRRTKWK+Q
Sbjct: 162 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221

Query: 237 TAVGLELLAEAG-----------------------------------NYSALQRMFPSPY 261
              G +  A+ G                                   +YSA   +FPS  
Sbjct: 222 NP-GADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAA 280

Query: 262 FYPQSLVSNLDPGAALYLYRGPSAPPP 288
            +P +  +   PG+    + GPS   P
Sbjct: 281 SFPLTAAA---PGSPFAPFLGPSYLTP 304


>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 85.1 bits (209), Expect = 8e-17
 Identities = 55/147 (37%), Positives = 72/147 (48%), Gaps = 39/147 (26%)

Query: 177 KPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQ 236
           KPR+ARTAFT  QL  LE  F   +YLSV +R+ LA SL+LT+TQVK W+QNRRTKWK+Q
Sbjct: 184 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 243

Query: 237 TAVGLELLAEAG-----------------------------------NYSALQRMFPSPY 261
              G +  A+ G                                   +YSA   +FPS  
Sbjct: 244 NP-GADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAA 302

Query: 262 FYPQSLVSNLDPGAALYLYRGPSAPPP 288
            +P +  +   PG+    + GPS   P
Sbjct: 303 SFPLTAAA---PGSPFAPFLGPSYLTP 326


>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 85.1 bits (209), Expect = 8e-17
 Identities = 55/147 (37%), Positives = 72/147 (48%), Gaps = 39/147 (26%)

Query: 177 KPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQ 236
           KPR+ARTAFT  QL  LE  F   +YLSV +R+ LA SL+LT+TQVK W+QNRRTKWK+Q
Sbjct: 184 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 243

Query: 237 TAVGLELLAEAG-----------------------------------NYSALQRMFPSPY 261
              G +  A+ G                                   +YSA   +FPS  
Sbjct: 244 NP-GADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAA 302

Query: 262 FYPQSLVSNLDPGAALYLYRGPSAPPP 288
            +P +  +   PG+    + GPS   P
Sbjct: 303 SFPLTAAA---PGSPFAPFLGPSYLTP 326


>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 85.1 bits (209), Expect = 8e-17
 Identities = 55/147 (37%), Positives = 72/147 (48%), Gaps = 39/147 (26%)

Query: 177 KPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQ 236
           KPR+ARTAFT  QL  LE  F   +YLSV +R+ LA SL+LT+TQVK W+QNRRTKWK+Q
Sbjct: 184 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 243

Query: 237 TAVGLELLAEAG-----------------------------------NYSALQRMFPSPY 261
              G +  A+ G                                   +YSA   +FPS  
Sbjct: 244 NP-GADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAA 302

Query: 262 FYPQSLVSNLDPGAALYLYRGPSAPPP 288
            +P +  +   PG+    + GPS   P
Sbjct: 303 SFPLTAAA---PGSPFAPFLGPSYLTP 326


>gi|153218470 BarH-like homeobox 1 [Homo sapiens]
          Length = 254

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 39/65 (60%), Positives = 49/65 (75%)

Query: 171 PPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRR 230
           P  + KK R++RT FT+ QL  LE+ FE+QKYLS  DR++LA SL L+  QVKTWYQNRR
Sbjct: 135 PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRR 194

Query: 231 TKWKR 235
            KWK+
Sbjct: 195 MKWKK 199


>gi|157743259 H6 family homeobox 3 [Homo sapiens]
          Length = 357

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 11/148 (7%)

Query: 144 SGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYL 203
           +G++  + +     E+  +   S    P  R KK    RT F+  Q+ QLE +F+ ++YL
Sbjct: 196 AGASVGAAAATPGAEDWKKGAESPEKKPACRKKK---TRTVFSRSQVFQLESTFDMKRYL 252

Query: 204 SVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFY 263
           S  +R  LAASL+LT+TQVK W+QNRR KWKRQ A  LE  A   +++A QR+   P  Y
Sbjct: 253 SSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELE--AANLSHAAAQRIVRVPILY 310

Query: 264 PQSLVSNLDPGAALYLYRGPSAPPPALQ 291
            ++  +    GAA        AP P  Q
Sbjct: 311 HENSAAE---GAAA---AAAGAPVPVSQ 332


>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
          Length = 330

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 41/78 (52%), Positives = 53/78 (67%)

Query: 177 KPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQ 236
           K +K RT+FT  Q+ +LE+ F RQKYL+  +R  LA +L +TD QVKTW+QNRRTKW+RQ
Sbjct: 200 KKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQ 259

Query: 237 TAVGLELLAEAGNYSALQ 254
           TA   E   +  N   LQ
Sbjct: 260 TAEEREAERQQANRILLQ 277


>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
           sapiens]
          Length = 406

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 57/153 (37%), Positives = 76/153 (49%), Gaps = 14/153 (9%)

Query: 176 KKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKR 235
           ++ R+ RTAFT  QL +LE  F+  +Y  V  R  LAA LNLT+ +V+ W+QNRR KWKR
Sbjct: 137 ERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTEDRVQVWFQNRRAKWKR 196

Query: 236 -QTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAP-PPALQRP 293
            Q  + L   A A     L       Y+   +    LDP   ++L   P  P PP L  P
Sbjct: 197 NQRVLMLRNTATADLAHPLDMFLGGAYYAAPA----LDPALCVHLV--PQLPRPPVLPVP 250

Query: 294 LVPRILIHGLQGASEPPPPLPPLAGVLPRAAQP 326
            +P       +    P PP PP+A + P A  P
Sbjct: 251 PMPP------RPPMVPMPPRPPIAPMPPMAPVP 277


>gi|70608170 H6 family homeobox 2 [Homo sapiens]
          Length = 273

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 57/153 (37%), Positives = 79/153 (51%), Gaps = 31/153 (20%)

Query: 150 SDSEYKVKEEGDREISSSRDSPPVRLKKP-----------RKARTAFTDHQLAQLERSFE 198
           S S    KEE +R + +   SP     +            +K RT F+  Q+ QLE +F+
Sbjct: 110 SPSHSDFKEEKERLLPAGSPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFD 169

Query: 199 RQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLEL--LAEAG-------- 248
            ++YLS  +R  LA+SL LT+TQVKTW+QNRR KWKRQ +  LE   +A A         
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMP 229

Query: 249 ---NYSALQRM-------FPSPYFYPQSLVSNL 271
                S+L R+       FP+P +YP S +S L
Sbjct: 230 LVFRDSSLLRVPVPRSLAFPAPLYYPGSNLSAL 262


>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
          Length = 291

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 3/97 (3%)

Query: 177 KPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQ 236
           K +K RT+F+  Q+ +LE+ F RQKYL+  +R  LA SL +TD QVKTW+QNRRTKW+RQ
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224

Query: 237 TAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDP 273
           TA   E   +  +   LQ    +   + +SL  ++ P
Sbjct: 225 TAEEREAERQQASRLMLQLQHDA---FQKSLNDSIQP 258


>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
          Length = 483

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 32/266 (12%)

Query: 60  ETGTPRPGGASG-------PGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAACA 112
           ETG+ RPG   G       P ++  ++  +   P          L++D + D   + + +
Sbjct: 92  ETGSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVS 151

Query: 113 PYSS---SGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRD 169
             S    S      E    L  K AE+   K   S     S+     + +   +I S  D
Sbjct: 152 SISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPD 211

Query: 170 SPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNR 229
            P  R  K R++RT FT  QL +LER+FER  Y  +  R ELA    LT+ +V+ W+ NR
Sbjct: 212 LPLKR--KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNR 269

Query: 230 RTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPA 289
           R +W++Q        A A    A   + P    +P + +  L           P++ P A
Sbjct: 270 RARWRKQ--------AGANQLMAFNHLIPGG--FPPTAMPTLPTYQLSETSYQPTSIPQA 319

Query: 290 LQRPLVPRILIHGLQGASEPPPPLPP 315
           +  P                P PLPP
Sbjct: 320 VSDP----------SSTVHRPQPLPP 335


>gi|63054872 ladybird homeobox 1 [Homo sapiens]
          Length = 281

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 67/192 (34%), Positives = 87/192 (45%), Gaps = 30/192 (15%)

Query: 63  TPRPGGASGPGLDSHLQP-GQLSAPAQSRTVTSSFLIRDILADCKP-------------- 107
           T +  G + PG +    P   L  PA S    + F I DIL   KP              
Sbjct: 2   TSKEDGKAAPGEERRRSPLDHLPPPANSNKPLTPFSIEDILN--KPSVRRSYSLCGAAHL 59

Query: 108 LAACAPYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDRE---- 163
           LAA   ++  G P A    GR            L++  S      E  V +  +      
Sbjct: 60  LAAADKHAQGGLPLA----GRALLSQTSPLC-ALEELASKTFKGLEVSVLQAAEGRDGMT 114

Query: 164 ISSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVK 223
           I   R +P    KK RK+RTAFT+HQ+ +LE+ F  QKYLS  DR ++A  L LT+ QV 
Sbjct: 115 IFGQRQTP----KKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVI 170

Query: 224 TWYQNRRTKWKR 235
           TW+QNRR K KR
Sbjct: 171 TWFQNRRAKLKR 182


>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
          Length = 304

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 49/131 (37%), Positives = 66/131 (50%), Gaps = 14/131 (10%)

Query: 105 CKPLAACAPYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREI 164
           C   ++    + +G   AP   GR A   AE  +    +SG    SDS    +     E+
Sbjct: 128 CSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEK----RSGGKRKSDSSDSQEGNYKSEV 183

Query: 165 SSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKT 224
           +S          KPRK RTAFT  Q+ +LE  F    YL+   R E+A +L+LT+ QVK 
Sbjct: 184 NS----------KPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKV 233

Query: 225 WYQNRRTKWKR 235
           W+QNRR KWKR
Sbjct: 234 WFQNRRMKWKR 244


>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
          Length = 403

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 70/267 (26%), Positives = 106/267 (39%), Gaps = 33/267 (12%)

Query: 60  ETGTPRPGGASG--------PGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAAC 111
           ETG+ RPG   G        P ++  ++  +   P          L++D + D   + + 
Sbjct: 92  ETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSV 151

Query: 112 APYSS---SGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSR 168
           +  S    S      E    L  K AE+   K   S     S+     + +   +I S  
Sbjct: 152 SSISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEP 211

Query: 169 DSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQN 228
           D P  R  K R++RT FT  QL +LER+FER  Y  +  R ELA    LT+ +V+ W+ N
Sbjct: 212 DLPLKR--KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSN 269

Query: 229 RRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPP 288
           RR +W++Q        A A    A   + P    +P + +  L           P++ P 
Sbjct: 270 RRARWRKQ--------AGANQLMAFNHLIPGG--FPPTAMPTLPTYQLSETSYQPTSIPQ 319

Query: 289 ALQRPLVPRILIHGLQGASEPPPPLPP 315
           A+  P                P PLPP
Sbjct: 320 AVSDP----------SSTVHRPQPLPP 336


>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
          Length = 407

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 70/267 (26%), Positives = 106/267 (39%), Gaps = 33/267 (12%)

Query: 60  ETGTPRPGGASG--------PGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAAC 111
           ETG+ RPG   G        P ++  ++  +   P          L++D + D   + + 
Sbjct: 92  ETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSV 151

Query: 112 APYSS---SGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSR 168
           +  S    S      E    L  K AE+   K   S     S+     + +   +I S  
Sbjct: 152 SSISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEP 211

Query: 169 DSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQN 228
           D P  R  K R++RT FT  QL +LER+FER  Y  +  R ELA    LT+ +V+ W+ N
Sbjct: 212 DLPLKR--KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSN 269

Query: 229 RRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPP 288
           RR +W++Q        A A    A   + P    +P + +  L           P++ P 
Sbjct: 270 RRARWRKQ--------AGANQLMAFNHLIPGG--FPPTAMPTLPTYQLSETSYQPTSIPQ 319

Query: 289 ALQRPLVPRILIHGLQGASEPPPPLPP 315
           A+  P                P PLPP
Sbjct: 320 AVSDP----------SSTVHRPQPLPP 336


>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
          Length = 505

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 70/267 (26%), Positives = 106/267 (39%), Gaps = 33/267 (12%)

Query: 60  ETGTPRPGGASG--------PGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAAC 111
           ETG+ RPG   G        P ++  ++  +   P          L++D + D   + + 
Sbjct: 92  ETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSV 151

Query: 112 APYSS---SGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSR 168
           +  S    S      E    L  K AE+   K   S     S+     + +   +I S  
Sbjct: 152 SSISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEP 211

Query: 169 DSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQN 228
           D P  R  K R++RT FT  QL +LER+FER  Y  +  R ELA    LT+ +V+ W+ N
Sbjct: 212 DLPLKR--KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSN 269

Query: 229 RRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPP 288
           RR +W++Q        A A    A   + P    +P + +  L           P++ P 
Sbjct: 270 RRARWRKQ--------AGANQLMAFNHLIPGG--FPPTAMPTLPTYQLSETSYQPTSIPQ 319

Query: 289 ALQRPLVPRILIHGLQGASEPPPPLPP 315
           A+  P                P PLPP
Sbjct: 320 AVSDP----------SSTVHRPQPLPP 336


>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
          Length = 484

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 70/267 (26%), Positives = 106/267 (39%), Gaps = 33/267 (12%)

Query: 60  ETGTPRPGGASG--------PGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAAC 111
           ETG+ RPG   G        P ++  ++  +   P          L++D + D   + + 
Sbjct: 92  ETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSV 151

Query: 112 APYSS---SGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSR 168
           +  S    S      E    L  K AE+   K   S     S+     + +   +I S  
Sbjct: 152 SSISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEP 211

Query: 169 DSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQN 228
           D P  R  K R++RT FT  QL +LER+FER  Y  +  R ELA    LT+ +V+ W+ N
Sbjct: 212 DLPLKR--KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSN 269

Query: 229 RRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPP 288
           RR +W++Q        A A    A   + P    +P + +  L           P++ P 
Sbjct: 270 RRARWRKQ--------AGANQLMAFNHLIPGG--FPPTAMPTLPTYQLSETSYQPTSIPQ 319

Query: 289 ALQRPLVPRILIHGLQGASEPPPPLPP 315
           A+  P                P PLPP
Sbjct: 320 AVSDP----------SSTVHRPQPLPP 336


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,201,295
Number of Sequences: 37866
Number of extensions: 964569
Number of successful extensions: 6297
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 268
Number of HSP's that attempted gapping in prelim test: 5253
Number of HSP's gapped (non-prelim): 1237
length of query: 327
length of database: 18,247,518
effective HSP length: 103
effective length of query: 224
effective length of database: 14,347,320
effective search space: 3213799680
effective search space used: 3213799680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.