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Search of human proteins with 14149675
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
(616 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 1248 0.0
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 816 0.0
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 77 6e-14
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 76 1e-13
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 69 1e-11
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 69 1e-11
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 69 1e-11
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 65 1e-10
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens] 65 2e-10
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 65 2e-10
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 65 2e-10
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 65 2e-10
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 64 3e-10
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 64 5e-10
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 64 5e-10
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 63 7e-10
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 63 9e-10
gi|4826972 RNA binding motif protein 8A [Homo sapiens] 62 1e-09
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 62 1e-09
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 62 1e-09
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 62 1e-09
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 62 2e-09
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 62 2e-09
gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens] 62 2e-09
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 62 2e-09
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 62 2e-09
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 62 2e-09
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 62 2e-09
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 62 2e-09
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 62 2e-09
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 1248 bits (3230), Expect = 0.0
Identities = 616/616 (100%), Positives = 616/616 (100%)
Query: 1 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG 60
MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG
Sbjct: 1 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG 60
Query: 61 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID 120
FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID
Sbjct: 61 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID 120
Query: 121 PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR 180
PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR
Sbjct: 121 PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR 180
Query: 181 IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ 240
IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ
Sbjct: 181 IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ 240
Query: 241 HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL 300
HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL
Sbjct: 241 HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL 300
Query: 301 ERGQVQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQ 360
ERGQVQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQ
Sbjct: 301 ERGQVQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQ 360
Query: 361 GPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMET 420
GPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMET
Sbjct: 361 GPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMET 420
Query: 421 RAMETEVLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGP 480
RAMETEVLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGP
Sbjct: 421 RAMETEVLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGP 480
Query: 481 INIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQG 540
INIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQG
Sbjct: 481 INIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQG 540
Query: 541 GGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQ 600
GGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQ
Sbjct: 541 GGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQ 600
Query: 601 SILILKEQIQKSTGAS 616
SILILKEQIQKSTGAS
Sbjct: 601 SILILKEQIQKSTGAS 616
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 816 bits (2108), Expect = 0.0
Identities = 430/630 (68%), Positives = 469/630 (74%), Gaps = 69/630 (10%)
Query: 1 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG 60
M+ L VRDPA+DRSLRSVFVGNIPYEATEEQLKDIFSEVG VVSFRLVYDRETGKPKGYG
Sbjct: 1 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG 60
Query: 61 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID 120
FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLG AP+I+SPYG+ I
Sbjct: 61 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS 120
Query: 121 PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR 180
PEDAPESI++AVASLPPEQMFELMKQMKLCVQNS QEARNMLLQNPQLAYALLQAQVVMR
Sbjct: 121 PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR 180
Query: 181 IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ 240
I+DPEIALKILHR+ ++ LI G Q V +GPG G NV +NQQNP APQ Q
Sbjct: 181 IVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGSGS--------NVSMNQQNPQAPQAQ 232
Query: 241 HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL 300
L V PPLMQ +QGG+PAPG +PAAV G GPGSL PGG MQ Q+GMPG GPV +
Sbjct: 233 SLGGMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSM 292
Query: 301 ERGQVQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQ 360
ERGQV M DPRA + RG + PRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQ
Sbjct: 293 ERGQVPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQ 352
Query: 361 GPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRD-----S 415
GPPMHH GH++RGP HE+RGGPL +PR L+ EPRGPM+DQRG P+DGRGGRD +
Sbjct: 353 GPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDA 412
Query: 416 RAMETRAMETE----------VLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVP 465
R ME RAME +E R ME R ME AME R ME RGM+ARG++ RGPVP
Sbjct: 413 RGMEARAMEARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPVP 472
Query: 466 SSRGPMTGGIQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQG 525
RGP+ G+QGP PIN+
Sbjct: 473 GPRGPIPSGMQGPSPINM------------------------------------------ 490
Query: 526 GGMQGAGIQGVSIQGGGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQVLQ 585
GA + S Q +QG G+QGAS QGGSQP FSPGQ+QVTPQD EKAALIMQVLQ
Sbjct: 491 ----GAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEKAALIMQVLQ 546
Query: 586 LTADQIAMLPPEQRQSILILKEQIQKSTGA 615
LTADQIAMLPPEQRQSILILKEQIQKSTGA
Sbjct: 547 LTADQIAMLPPEQRQSILILKEQIQKSTGA 576
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 76.6 bits (187), Expect = 6e-14
Identities = 106/379 (27%), Positives = 153/379 (40%), Gaps = 68/379 (17%)
Query: 240 QHLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQ------LGMP 293
+ LA++ V+ I P P G P GP P PG GP S P G QP + M
Sbjct: 562 ERLAQKQVEQIQP----PPSSGTPLLGPQP--FPGQGPMSQIPQGFQQPHPSQQMPMNMA 615
Query: 294 GVGPVPLERGQVQMSDPRAPI-PRGP-VTPGGLPPRGLLGDA-----------PNDPRGG 340
+GP P +GQ + P+ + P+GP + GG P+G +G P D G
Sbjct: 616 QMGP-PGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGP 674
Query: 341 TLLS----VTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPR 396
+ G + P+G GP P H GP H GP G P+ +G P+
Sbjct: 675 QGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPG-PQGHLG-PQ 732
Query: 397 GPMIDQ--------RGL-----PMDGRGGRDSRAMETRAMETEVLETRVMERRGMETCAM 443
GP Q RG+ P +GG S+ ++ + ++ + RGM+
Sbjct: 733 GPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMG---LNPRGMQG--- 786
Query: 444 ETRGMEARGMDARGLEMRGPVPSSRGP-MTGGIQGPGPINIGAGGPPQGPRQVPGISGVG 502
E +G +G+ M P RGP GG+ G GP + +GP+++ G+ G
Sbjct: 787 PPGPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEM------RGPQEIRGMQG-P 839
Query: 503 NPGAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQGGGIQGGGIQGASKQGGSQPSSF 562
P M G + G G+ Q G QG+ G GG+QG G Q +
Sbjct: 840 PPQGSMLGPPQELRGPPGSQSQQGPPQGS--------LGPPPQGGMQGPPGPQGQQNPAR 891
Query: 563 SPGQSQ-VTPQDQEKAALI 580
P SQ P Q+K L+
Sbjct: 892 GPHPSQGPIPFQQQKTPLL 910
Score = 61.2 bits (147), Expect = 3e-09
Identities = 96/324 (29%), Positives = 117/324 (36%), Gaps = 81/324 (25%)
Query: 211 SGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGGIPAPGPIPA 270
SGP GP PGP + Q PP PQ HL + + P G+ P P P
Sbjct: 699 SGPQGHMGPQGPPGPQGHIGPQGPPGPQ-GHLGPQGPPGTQGMQGPPGPRGMQGP-PHPH 756
Query: 271 AVPGAGPGS--------------LTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPR 316
+ G GPGS L P G P GP P +G + P+ R
Sbjct: 757 GIQG-GPGSQGIQGPVSQGPLMGLNPRGMQGPPGPRENQGPAP--QGMIMGHPPQE--MR 811
Query: 317 GPVTPGGL--------------------PPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLG 356
GP PGGL PP+G + P + RG S + + P+G LG
Sbjct: 812 GPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGPPQELRGPP-GSQSQQGPPQGSLG 870
Query: 357 PP----HQGPP-----MHHASG-HDTRGPSSHEMRGGP-LGD-PRLLI---GEPRGPMID 401
PP QGPP + A G H ++GP + + P LGD PR G+ GP
Sbjct: 871 PPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGPPPL 930
Query: 402 QRGLPMDGRGGR---------------DSRAMETRAMETEVLETRVMERRGMETCAMETR 446
GL G GR DSR M M R E
Sbjct: 931 IPGLGQQGAQGRIPPLNPGQGPGPNKGDSRGPPNHHMGP-------MSERRHEQSGGPEH 983
Query: 447 GMEARGMDARGLEMRGPVPSSRGP 470
G E RG G + RGP P RGP
Sbjct: 984 GPE-RGPFRGGQDCRGP-PDRRGP 1005
>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
Length = 322
Score = 75.9 bits (185), Expect = 1e-13
Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+F+G +PYE TE + +FS+ G +V+ LV D++TGK KG+ F Y+DQ + + A+ N
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 78 NGREFSGRALRVD---NAASEKNKEEL 101
NG + GR +RVD N + K+ EE+
Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPKDSEEI 124
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 68.9 bits (167), Expect = 1e-11
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
++VG++ + TE+ L+ IF G + S +L+ D ETG+ KGYGF + D E A A+ L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 78 NGREFSGRALRVDNAASEKNKEELKS 103
NG E +GR ++V + + S
Sbjct: 312 NGFELAGRPMKVGHVTERTDASSASS 337
Score = 43.1 bits (100), Expect = 7e-04
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
+R R+VF + L++ FS VG V R++ DR + + KG + E+ D +
Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208
Query: 72 SAMRNLNGREFSGRALRVDNAASEKNK 98
A+ L G+ G + V + +EKN+
Sbjct: 209 LAI-GLTGQRVLGVPIIVQASQAEKNR 234
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 68.9 bits (167), Expect = 1e-11
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
++VG++ + TE+ L+ IF G + S +L+ D ETG+ KGYGF + D E A A+ L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 78 NGREFSGRALRVDNAASEKNKEELKS 103
NG E +GR ++V + + S
Sbjct: 312 NGFELAGRPMKVGHVTERTDASSASS 337
Score = 43.1 bits (100), Expect = 7e-04
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
+R R+VF + L++ FS VG V R++ DR + + KG + E+ D +
Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208
Query: 72 SAMRNLNGREFSGRALRVDNAASEKNK 98
A+ L G+ G + V + +EKN+
Sbjct: 209 LAI-GLTGQRVLGVPIIVQASQAEKNR 234
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 68.9 bits (167), Expect = 1e-11
Identities = 111/386 (28%), Positives = 136/386 (35%), Gaps = 61/386 (15%)
Query: 201 IPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQ--PQHLARRPVKDIPPLMQTPI 258
+PG VSGP G G PGP+ L PP P P H
Sbjct: 119 LPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGH----------------- 161
Query: 259 QGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGV-GPVPL--ERGQV----QMSDPR 311
PG +P S+ P G P GMPG GP E+G+V + DP
Sbjct: 162 ------PGVLPEGATDLQCPSICPPGPPGPP-GMPGFKGPTGYKGEQGEVGKDGEKGDPG 214
Query: 312 APIPRG-PVTPGGLPPRGLLG-DAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASG 369
P P G P + G PRGL G P P G G P G G P +
Sbjct: 215 PPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDR--GPIGFRGPPGIPGAPGKAGDRGERGP 272
Query: 370 HDTRGPSSHEMRGGPLGDPRLL--IGEPRGPMID-QRGLP----MDGRGGRDSRAMETRA 422
RGP R GP G P + GEP P D Q G+P G GR+ E
Sbjct: 273 EGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGP 332
Query: 423 METEVLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGPIN 482
L R + EA G+ +P RG G +G +
Sbjct: 333 NGLPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGE--AGHRG----S 386
Query: 483 IGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQG-------TGMQGAGIQGG--GMQG-AG 532
GA GP QGP PG+ G M G+ G G +G G G G QG AG
Sbjct: 387 AGALGP-QGPPGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAG 445
Query: 533 IQGVSIQGGGIQGGGIQGASKQGGSQ 558
G+ G + G+ G + GS+
Sbjct: 446 SDGLPGDKGELGPSGLVGPKGESGSR 471
Score = 53.5 bits (127), Expect = 6e-07
Identities = 95/314 (30%), Positives = 124/314 (39%), Gaps = 69/314 (21%)
Query: 265 PG-PIPAAVPG--AGPGSLTPGGAMQPQLGMPGVGPVPLERGQV-QMSDPRAPIPRG--- 317
PG P A +PG G GA+ PQ G PG V +GQ M DP P P+G
Sbjct: 366 PGVPGDAGMPGERGEAGHRGSAGALGPQ-GPPGAPGVRGFQGQKGSMGDPGLPGPQGLRG 424
Query: 318 ---PVTPGGLP-PRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTR 373
PGG P+G G A +D G GE+ P G +GP + T+
Sbjct: 425 DVGDRGPGGAAGPKGDQGIAGSDGLPGD----KGELGPSGLVGPKGESGSRGELGPKGTQ 480
Query: 374 GPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLP----MDGRGGRDSRAMETRAMETEVLE 429
GP+ G G P GP+ +G+P + G+ G + E E
Sbjct: 481 GPNGTSGVQGVPGPP--------GPL-GLQGVPGVPGITGKPGVPGK---------EASE 522
Query: 430 TRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGPINIGAGGPP 489
R+ E G GM + + +R P+ G I PGP GPP
Sbjct: 523 QRIRELCG---------GMISEQIAQLAAHLRKPLAP------GSIGRPGP-----AGPP 562
Query: 490 QGPRQVPGISGVGNPGA----GMQG-TGIQGT-GMQG-AGIQGG-GMQGAGIQGVSIQGG 541
GP PG +G+PGA G +G TG G G +G G +G G GAG+ G G
Sbjct: 563 -GPPGPPG--SIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDGPEGDQG 619
Query: 542 GIQGGGIQGASKQG 555
G+ G SK G
Sbjct: 620 PQGPQGVPGTSKDG 633
Score = 32.7 bits (73), Expect = 1.0
Identities = 69/250 (27%), Positives = 82/250 (32%), Gaps = 55/250 (22%)
Query: 203 GKSQSVSVSGP-GPGPGPGLCPGPNVLLNQQNPPAPQPQHLA-----RRPVKDIPPLMQT 256
G S GP GP PG+ + +P P PQ L R P P
Sbjct: 382 GHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAGPKGDQ 441
Query: 257 PIQGGIPAPGPIPAAVPGA--GP-------GSLTPGGAMQPQLGMPGVGPVPLERGQVQM 307
I G PG P GP G L P G P G GV VP G + +
Sbjct: 442 GIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQGPN-GTSGVQGVPGPPGPLGL 500
Query: 308 SDPRAPIPRGPVTPGGLPPRGLLGDAPNDPR-----GGTLLS-------------VTGEV 349
P PG G+ G ++ R GG + G +
Sbjct: 501 QGV-------PGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSI 553
Query: 350 EPRGYLGPPHQGPPMHHAS-GHD-TRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQ----- 402
G GPP GPP S GH RGP + G LGDP PRG D+
Sbjct: 554 GRPGPAGPP--GPPGPPGSIGHPGARGPPGYRGPTGELGDP-----GPRGNQGDRGDKGA 606
Query: 403 RGLPMDGRGG 412
G +DG G
Sbjct: 607 AGAGLDGPEG 616
Score = 29.6 bits (65), Expect = 8.6
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 463 PVPSSRGPMTGGIQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQG-TGMQGA 521
P P G + PGP +G G P GP PG +GV P G+ G G +G+ G
Sbjct: 94 PGPKGAPGERGSLGPPGPPGLGGKGLP-GP---PGEAGVSGPPGGIGLRGPPGPSGLPGL 149
Query: 522 GIQGGGMQGAGIQGVSIQG 540
G G GV +G
Sbjct: 150 PGPPGPPGPPGHPGVLPEG 168
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 65.5 bits (158), Expect = 1e-10
Identities = 118/404 (29%), Positives = 150/404 (37%), Gaps = 58/404 (14%)
Query: 201 IPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQG 260
+PG+ + GP PGP PGP + P P+ ++ + P P
Sbjct: 674 LPGEPGPRGLLGPKGPPGP---PGPPGVTGMDGQPGPKG-NVGPQGEPGPPGQQGNPGAQ 729
Query: 261 GIPAP----GPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPI-- 314
G+P P GP P PG GA P G PG P E+G P+ PI
Sbjct: 730 GLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPP-GHPGKEGPPGEKGGQGPPGPQGPIGY 788
Query: 315 --PRGPVTPGGLPPRGLLGDAPNDPRGGTL-----LSVTGEVEPRGYLGPPHQGPPMHHA 367
PRG G+ RGL G G + + G+ RG +GPP GP
Sbjct: 789 PGPRGVKGADGI--RGLKGTKGEKGEDGFPGFKGDMGIKGD---RGEIGPP--GP----- 836
Query: 368 SGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMETRAMETEV 427
G D GP + RGGP GDP P GP ++ L + G G R ++
Sbjct: 837 RGED--GPEGPKGRGGPNGDP-----GPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPG 889
Query: 428 LETRVMERRGMETCAMETRGMEARGMDARGLEMRGP--VPSSRGPMTGGIQGPGPIN-IG 484
E+ G T + RG RGP + GP G G GP G
Sbjct: 890 FPGANGEKGGRGTPGKPGPRGQRGPTGPRG--ERGPRGITGKPGP-KGNSGGDGPAGPPG 946
Query: 485 AGGP--PQGPRQVPGISG-VGNPGA-GMQG-------TGIQG-TGMQG-AGIQG--GGMQ 529
GP PQGP PG G G PG G+ G TG QG TG G G+ G G
Sbjct: 947 ERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTG 1006
Query: 530 GAGIQGVSIQGGGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQD 573
G G G G QG G + + PG + + +D
Sbjct: 1007 ETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKD 1050
Score = 52.0 bits (123), Expect = 2e-06
Identities = 95/311 (30%), Positives = 117/311 (37%), Gaps = 44/311 (14%)
Query: 266 GPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERG-QVQMSDPRAPIPRGPV----T 320
GP P PG L P G + +LG+PG+ P +G + + P P G T
Sbjct: 844 GPKGRGGPNGDPGPLGPPGE-KGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGT 902
Query: 321 PGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSSHEM 380
PG PRG G P PRG E PRG G P P ++ G GP
Sbjct: 903 PGKPGPRGQRG--PTGPRG--------ERGPRGITGKPG---PKGNSGGDGPAGPPGERG 949
Query: 381 RGGPLGDPRLLIGEPRGPMIDQRGLP-MDGRGGRDSRAMETRAMETEVLETRVMERRGME 439
GP G P G P+GP G P DG G + ET + + G +
Sbjct: 950 PNGPQG-PTGFPG-PKGPP----GPPGKDGLPGHPGQRGET-GFQGKTGPPGPPGVVGPQ 1002
Query: 440 TCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQG----PGPINI-GAGGPPQGPRQ 494
ET M RG GP P G +G PGP + G GPP G R
Sbjct: 1003 GPTGETGPMGERGHPGPP----GPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPP-GLRG 1057
Query: 495 VPGISGVGNPGAGMQGTGIQG-TGMQGAGIQGGGMQGAGIQG-VSIQG-GGIQG----GG 547
PG G+ P + G +G G G G AG G + I G G QG G
Sbjct: 1058 FPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAG 1117
Query: 548 IQGASKQGGSQ 558
+GA + G Q
Sbjct: 1118 EKGAPGEKGPQ 1128
Score = 51.2 bits (121), Expect = 3e-06
Identities = 105/398 (26%), Positives = 135/398 (33%), Gaps = 86/398 (21%)
Query: 231 QQNPPAPQ-PQHLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQ 289
+Q PP P PQ P+ Q G PGP G P G P
Sbjct: 1175 EQGPPGPTGPQG----------PIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPP 1224
Query: 290 --LGMPGVGPVPLERGQV----QMSDPRAPIPRGPV----------TPGGLPPRGLLGD- 332
+G+ G+ P E+G+ QM P P PRGP PGG+ G +G+
Sbjct: 1225 GPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEK 1284
Query: 333 ---------------APNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSS 377
P P+G GE P G GPP P + GP
Sbjct: 1285 GEPGEAGEPGLPGEGGPPGPKGER--GEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVG 1342
Query: 378 HEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMETRAMETEVLETRVMERRG 437
GP G+P GP Q G P D + + E + +RG
Sbjct: 1343 FPGDPGPPGEP--------GP-AGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRG 1393
Query: 438 ME-TCAMETRGMEARGMDARGLE----MRGPV-----PSSRGPMTGGIQG-PGPIN---- 482
E R E GLE GP+ P GP G++G PGP+
Sbjct: 1394 PPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGP--DGLRGIPGPVGEQGL 1451
Query: 483 IGAGGP-----PQGPRQVPGISGVGNPGAGMQGTGIQG----TGMQGAGIQGG--GMQGA 531
G+ GP P GP +PG+ G P G+ G G QG G G QG+
Sbjct: 1452 PGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGS 1511
Query: 532 ----GIQGVSIQGGGIQGGGIQGASKQGGSQPSSFSPG 565
G QG++ G I G G G + + S G
Sbjct: 1512 SGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSG 1549
Score = 49.7 bits (117), Expect = 8e-06
Identities = 104/429 (24%), Positives = 135/429 (31%), Gaps = 99/429 (23%)
Query: 202 PGKSQSVSVSGPGPGPGPGLCPGP---------------NVLLNQQNPPAPQPQHLARRP 246
PG+ GP PGP PGP + PP P + P
Sbjct: 945 PGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGP 1004
Query: 247 VKDIPPLMQT--------PIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQL-GMPGVGP 297
+ P+ + P + G+P GP L PG P L G PG
Sbjct: 1005 TGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGL-PGKDGPPGLRGFPGDRG 1063
Query: 298 VPLERGQVQMSDPRAPI-PRGPV-TPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYL 355
+P G + + P P GP +PG P G G R G G P G
Sbjct: 1064 LPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGP----QGPPGPAGEK 1119
Query: 356 GPPHQGPPMHHASGHDTRGPSSHEMRGGPLGDP-----RLLIGE--------------PR 396
G P + P A +GP GP+G P + IGE P
Sbjct: 1120 GAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPP 1179
Query: 397 GPMIDQRGLPMDGRGGRDSRAMETRAMETEVLETRVMERRGMETCAMETRGMEARGMDAR 456
GP Q + G G D E ++G+ +
Sbjct: 1180 GPTGPQGPIGQPGPSGADG-------------EPGPRGQQGL--------------FGQK 1212
Query: 457 GLEMRGPVPSSRGPMTGGIQG-PGPI-------NIGAGGP-----PQGPRQVPGI----- 498
G E P GP+ G+QG PGP ++G GP P+GP PG
Sbjct: 1213 GDEGPRGFPGPPGPV--GLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQG 1270
Query: 499 --SGVGNPGAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQGGGIQGGGIQGASKQGG 556
G+GNPGA + G G +GG G +G + G G G G
Sbjct: 1271 PPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPG 1330
Query: 557 SQPSSFSPG 565
SPG
Sbjct: 1331 DDGPKGSPG 1339
Score = 42.0 bits (97), Expect = 0.002
Identities = 68/220 (30%), Positives = 83/220 (37%), Gaps = 41/220 (18%)
Query: 202 PGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAP------QPQHLARRPV-KDIPPLM 254
PG G PGP PGP+ ++ PP P Q + A+ + PP
Sbjct: 1362 PGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGK 1421
Query: 255 QTPI--QGGIPAPGP-----IPAAVPGAG-PGSLTPGGAMQPQ--LGMPGV----GPVPL 300
PI QG PGP IP V G PGS P G P G+PG+ GP
Sbjct: 1422 TGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKG- 1480
Query: 301 ERGQVQMSDPRAPIPRGPVTPGGLPPRGLLG-DAPNDPRGGTLLSVTGEVEPRGYLGPPH 359
E+G + P P G RGL G + P+G +TG P G GPP
Sbjct: 1481 EKGHPGLIGLIGP----PGEQGEKGDRGLPGPQGSSGPKGEQ--GITGPSGPIGPPGPPG 1534
Query: 360 -QGPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGP 398
GPP GP + GP G P+ G P P
Sbjct: 1535 LPGPP----------GPKGAKGSSGPTG-PKGEAGHPGPP 1563
Score = 36.6 bits (83), Expect = 0.070
Identities = 101/344 (29%), Positives = 125/344 (36%), Gaps = 83/344 (24%)
Query: 265 PGPI-PAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVTPG- 322
PGP PA +PG PG++ P G Q+G PG ERG P P PG
Sbjct: 471 PGPEGPAGLPGP-PGTMGPTG----QVGDPG------ERGP----------PGRPGLPGA 509
Query: 323 -GLP-PRGLLGDAPNDPRGGTLLSVTGEVEPRGYL--GPPHQGPPMHHASGHDTRGPSSH 378
GLP P G + P GG G+ +G + Q + + RGP+
Sbjct: 510 DGLPGPPGTMLMLPFRFGGG------GDAGSKGPMVSAQESQAQAILQQARLALRGPAGP 563
Query: 379 ---EMRGGPLGDPRL--LIGEP-----RGPMIDQRGLPMDGRGGRDSRAMETRAMETEVL 428
R GP+G P L GEP +GP Q G+ GR RA A
Sbjct: 564 MGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGA------ 617
Query: 429 ETRVMERRGM--ETCAMETRGMEA-RGMDARGLEMRGPVPSSRGPMTG------------ 473
RGM +T RG + G+ P PS G
Sbjct: 618 -------RGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVG 670
Query: 474 --GIQG-PGPINI-GAGGPPQGPRQVPGISGVGNPGAGMQGTGIQG----TGMQG-AGIQ 524
G+ G PGP + G GPP GP PG++G+ G QG G QG G Q
Sbjct: 671 PRGLPGEPGPRGLLGPKGPP-GPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQ 729
Query: 525 G-GGMQGA-GIQGVSIQGGGIQGGGIQGASKQGGSQPSSFSPGQ 566
G G QGA G G G G+ GA G PG+
Sbjct: 730 GLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGE 773
>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
Length = 430
Score = 65.1 bits (157), Expect = 2e-10
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
R RSVFVGN+PY+ E ++ F + GS+++ R+V D+ TG KG+G+ +++ ++
Sbjct: 284 RDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL 343
Query: 73 AMRNLNGREFSGRALRVDNAASEKNKEELK 102
A++ LN E GR LRV + NKE+ K
Sbjct: 344 ALK-LNNSELMGRKLRVMRSV---NKEKFK 369
Score = 35.0 bits (79), Expect = 0.20
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 16 RSVFVGNIPYEATEEQLKDIFSEVGSV--VSFRLVYDRETGKPKGY-------------- 59
R+VFVGN+P +++LK F E G + V FR + E K
Sbjct: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244
Query: 60 -GFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100
+ ++++ A A++ + G +RVD A+ ++++
Sbjct: 245 NAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDK 286
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 64.7 bits (156), Expect = 2e-10
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
++VG++ + TE+ L+ IF G + + L+ D +TG+ KGYGF + D E A A+ L
Sbjct: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
Query: 78 NGREFSGRALRV 89
NG E +GR +RV
Sbjct: 291 NGFELAGRPMRV 302
Score = 43.5 bits (101), Expect = 6e-04
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG---FCEYQDQE 68
+R R+VF + L+D FS VG V R++ DR + + KG FCE Q
Sbjct: 128 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 187
Query: 69 TALSAMRNLNGREFSGRALRVDNAASEKNK 98
A+ L G+ G + V + +EKN+
Sbjct: 188 LAI----GLTGQRLLGVPIIVQASQAEKNR 213
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 64.7 bits (156), Expect = 2e-10
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
++VG++ + TE+ L+ IF G + + L+ D +TG+ KGYGF + D E A A+ L
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 78 NGREFSGRALRV 89
NG E +GR +RV
Sbjct: 325 NGFELAGRPMRV 336
Score = 43.5 bits (101), Expect = 6e-04
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG---FCEYQDQE 68
+R R+VF + L+D FS VG V R++ DR + + KG FCE Q
Sbjct: 162 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 221
Query: 69 TALSAMRNLNGREFSGRALRVDNAASEKNK 98
A+ L G+ G + V + +EKN+
Sbjct: 222 LAI----GLTGQRLLGVPIIVQASQAEKNR 247
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 64.7 bits (156), Expect = 2e-10
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
++VG++ + TE+ L+ IF G + + L+ D +TG+ KGYGF + D E A A+ L
Sbjct: 249 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 308
Query: 78 NGREFSGRALRV 89
NG E +GR +RV
Sbjct: 309 NGFELAGRPMRV 320
Score = 43.5 bits (101), Expect = 6e-04
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG---FCEYQDQE 68
+R R+VF + L+D FS VG V R++ DR + + KG FCE Q
Sbjct: 146 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 205
Query: 69 TALSAMRNLNGREFSGRALRVDNAASEKNK 98
A+ L G+ G + V + +EKN+
Sbjct: 206 LAI----GLTGQRLLGVPIIVQASQAEKNR 231
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 64.3 bits (155), Expect = 3e-10
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+FVG + ++ E+ L+ +FS+ G + +V DRET + +G+GF +++ + A AM +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 78 NGREFSGRALRVDNAASEKNKEELKSLGPAA 108
NG+ GR +RVD A + G +A
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 63.5 bits (153), Expect = 5e-10
Identities = 107/381 (28%), Positives = 140/381 (36%), Gaps = 77/381 (20%)
Query: 203 GKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQ-PQHLARRPVKDIPPLMQTPIQG- 260
G+ S+ GP PGP PGP+ L P P P L P P IQG
Sbjct: 261 GEQSQASIQGPPGPPGP---PGPSGPLGHPGLPGPMGPPGLPGPP----GPKGDPGIQGY 313
Query: 261 -GIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPV 319
G +P +PG PG A+ G PG+ E+G P
Sbjct: 314 HGRKGERGMP-GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKG----------AEGSPG 362
Query: 320 TPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPP----------HQGPPMHHASG 369
PG L +G GDA N GG GE P G GPP GPP
Sbjct: 363 LPGLLGQKGEKGDAGNSIGGG-----RGEPGPPGLPGPPGPKGEAGVDGQVGPP-GQPGD 416
Query: 370 HDTRGPSSHEMRGGPLGDPRLLIGEP-RGPMIDQRGLPMDGRGGRDSRAMETRAMETEVL 428
RG + + GP G GEP +G M+D G + +
Sbjct: 417 KGERGAAGEQGPDGPKGSK----GEPGKGEMVDYNG-----------------NINEALQ 455
Query: 429 ETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGP--GPINIGAG 486
E R + G + A G+ + E+ P P P G +GP P ++G
Sbjct: 456 EIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPP 511
Query: 487 GP--PQGPRQVPGISGV-GNPGA-GMQG----TGIQGT-GMQGAGIQGGGMQGAGIQGVS 537
GP P G PG+ G G+PG+ G +G TG G+ G +G + G G+QGV
Sbjct: 512 GPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEGLQGVP 571
Query: 538 IQGGGIQGGGIQGASKQGGSQ 558
G G+ GA + G Q
Sbjct: 572 ---GPKGEAGLDGAKGEKGFQ 589
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 63.5 bits (153), Expect = 5e-10
Identities = 107/381 (28%), Positives = 140/381 (36%), Gaps = 77/381 (20%)
Query: 203 GKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQ-PQHLARRPVKDIPPLMQTPIQG- 260
G+ S+ GP PGP PGP+ L P P P L P P IQG
Sbjct: 261 GEQSQASIQGPPGPPGP---PGPSGPLGHPGLPGPMGPPGLPGPP----GPKGDPGIQGY 313
Query: 261 -GIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPV 319
G +P +PG PG A+ G PG+ E+G P
Sbjct: 314 HGRKGERGMP-GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKG----------AEGSPG 362
Query: 320 TPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPP----------HQGPPMHHASG 369
PG L +G GDA N GG GE P G GPP GPP
Sbjct: 363 LPGLLGQKGEKGDAGNSIGGG-----RGEPGPPGLPGPPGPKGEAGVDGQVGPP-GQPGD 416
Query: 370 HDTRGPSSHEMRGGPLGDPRLLIGEP-RGPMIDQRGLPMDGRGGRDSRAMETRAMETEVL 428
RG + + GP G GEP +G M+D G + +
Sbjct: 417 KGERGAAGEQGPDGPKGSK----GEPGKGEMVDYNG-----------------NINEALQ 455
Query: 429 ETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGP--GPINIGAG 486
E R + G + A G+ + E+ P P P G +GP P ++G
Sbjct: 456 EIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPP 511
Query: 487 GP--PQGPRQVPGISGV-GNPGA-GMQG----TGIQGT-GMQGAGIQGGGMQGAGIQGVS 537
GP P G PG+ G G+PG+ G +G TG G+ G +G + G G+QGV
Sbjct: 512 GPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEGLQGVP 571
Query: 538 IQGGGIQGGGIQGASKQGGSQ 558
G G+ GA + G Q
Sbjct: 572 ---GPKGEAGLDGAKGEKGFQ 589
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 63.2 bits (152), Expect = 7e-10
Identities = 127/433 (29%), Positives = 167/433 (38%), Gaps = 111/433 (25%)
Query: 202 PGKSQSVSVSGPGPGPGPGL---------CPGPNVLLNQQNPPAPQPQHLARRPVKDI-- 250
PG +Q GPG PG C P + ++ +P P+ R ++ I
Sbjct: 271 PGNAQKGEAGERGPGGIPGYKGDKGERGECGKPGIKGDKGSPGPYGPK--GPRGIQGITG 328
Query: 251 PPLMQTP--IQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGP--VPLERGQ-- 304
PP P QG PGP PG P G PG+G + ERGQ
Sbjct: 329 PPGDPGPKGFQGNKGEPGP--------------PGPYGSP--GAPGIGQQGIKGERGQEG 372
Query: 305 -------VQMSDPRAPIPRGPV-TPG--GLPPRGLLG-------DAPNDPRGGTLLSVTG 347
+ + +P P PRGP PG GLP G G + P P+G LS+ G
Sbjct: 373 RPGAPGPIGVGEPGQPGPRGPEGVPGERGLPGEGFPGPKGEKGSEGPTGPQGLQGLSIKG 432
Query: 348 EVEPRGYLGPPHQGPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLP- 406
E G +GP QGP G G + GP+G P P+GP +GLP
Sbjct: 433 EKGDIGPVGP--QGP-----MGIPGIGSQGEQGIQGPIGPP-----GPQGPA--GQGLPG 478
Query: 407 -------MDGRGGRDSRAMETRAMETEVLETRVMERRGM--ETCAMETRGMEARGMDARG 457
M G R + + + E + + G+ E A +G EA ARG
Sbjct: 479 SKGEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKG-EAGLPGARG 537
Query: 458 LE------MRGP-----------------VPSSRGPM-TGGIQGP-GPINIGAGGP--PQ 490
E GP +P GP GI GP G GP P+
Sbjct: 538 PEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPK 597
Query: 491 GPRQVPGISGV-GNPGAGMQG-TGIQG-TGMQGA-GIQGGGMQGA-GIQGVSIQGG--GI 543
G R PGI G G PG ++G G+QG G GA G++G G G G +G+ G G+
Sbjct: 598 GDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGL 657
Query: 544 QGGGIQGASKQGG 556
+G G GA + G
Sbjct: 658 RGVGDTGAKGEPG 670
Score = 62.0 bits (149), Expect = 2e-09
Identities = 112/389 (28%), Positives = 143/389 (36%), Gaps = 76/389 (19%)
Query: 202 PGKSQSVSVSGPG-PGP-GPGLCPGPNVLLNQQNPPAPQPQHLARRPV--KDIPPLMQTP 257
PG + V PG PGP GP PG L + P P+ + + P + + L
Sbjct: 374 PGAPGPIGVGEPGQPGPRGPEGVPGERGLPGE-GFPGPKGEKGSEGPTGPQGLQGLSIKG 432
Query: 258 IQGGIPAPGPI-PAAVPGAGP-------GSLTPGGAMQPQ-LGMPGVGPVPLERGQVQMS 308
+G I GP P +PG G G + P G P G+PG E GQ+ +
Sbjct: 433 EKGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKG---EVGQMGPT 489
Query: 309 DPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHAS 368
PR P+ G P G P L P P GE G GP +GPP
Sbjct: 490 GPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGP--EGPP----- 542
Query: 369 GHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLP-MDGRGGRDSRAMETRAMETEV 427
G GP E + G G+ QRGLP +G G
Sbjct: 543 GKGQPGPKGDEGKKGSKGNQ------------GQRGLPGPEGPKG--------------- 575
Query: 428 LETRVMERRGMETCAMETRGMEARGMDARGLEMRG----PVPSSRGPMTGGIQGP-GPIN 482
E +M GM ++ G D G + G P S RGP G+QGP GP+
Sbjct: 576 -EPGIMGPFGMPGTSIP--GPPGPKGDRGGPGIPGFKGEPGLSIRGPK--GVQGPRGPVG 630
Query: 483 IGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQG-AGIQG----GGMQGAGIQGVS 537
G G VPG G+ P M G+ TG +G G++G G +G G QG
Sbjct: 631 -APGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPK 689
Query: 538 IQGG--------GIQGGGIQGASKQGGSQ 558
G G G G QG + G Q
Sbjct: 690 GDTGQKGLPGPPGPPGYGSQGIKGEQGPQ 718
Score = 42.7 bits (99), Expect = 0.001
Identities = 61/208 (29%), Positives = 82/208 (39%), Gaps = 33/208 (15%)
Query: 203 GKSQSVSVSGP-GPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTP---I 258
G + GP GP PG+ GP + P P P+ R IP P I
Sbjct: 560 GNQGQRGLPGPEGPKGEPGIM-GPFGMPGTSIPGPPGPK--GDRGGPGIPGFKGEPGLSI 616
Query: 259 QG--GIPAP-GPIPA-AVPGAG-PGSLTPGGAMQPQ--LGMPGVGPVPLERGQVQMSDPR 311
+G G+ P GP+ A + G G PG P G P +G+ GVG + +P
Sbjct: 617 RGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAK------GEPG 670
Query: 312 APIPRGPVTPGGLPPRGLLGDA-------PNDPRGGTLLSVTGEVEPRGYLGPPHQGPPM 364
P GP P G+ +G GD P P G + GE P+G+ GP +G
Sbjct: 671 VRGPPGPSGPRGVGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGP--KGTMG 728
Query: 365 HHASG----HDTRGPSSHEMRGGPLGDP 388
H G H RG + G +G+P
Sbjct: 729 HGLPGQKGEHGERGDVGKKGDKGEIGEP 756
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 62.8 bits (151), Expect = 9e-10
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+FVG + + E+ L+D FS G + +V DRET + +G+GF + + E A AMR +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 78 NGREFSGRALRVDNA 92
NG GR +RVD+A
Sbjct: 68 NGESLDGRQIRVDHA 82
>gi|4826972 RNA binding motif protein 8A [Homo sapiens]
Length = 174
Score = 62.4 bits (150), Expect = 1e-09
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 8 DPAMDRSLRS--VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQ 65
+P RS+ +FV + EATEE + D F+E G + + L DR TG KGY EY+
Sbjct: 63 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 122
Query: 66 DQETALSAMRNLNGREFSGRALRVD 90
+ A +AM LNG++ G+ + VD
Sbjct: 123 TYKEAQAAMEGLNGQDLMGQPISVD 147
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 62.4 bits (150), Expect = 1e-09
Identities = 59/196 (30%), Positives = 71/196 (36%), Gaps = 21/196 (10%)
Query: 192 HRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPP-APQPQHLARRPVKDI 250
H++ P S+ V GPGP PG G P + PP + P P
Sbjct: 94 HQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTP 153
Query: 251 PPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDP 310
PP + T G P P P + VP P + GG P +PG GP P + P
Sbjct: 154 PPAV-TSAPPGAPPPTPPSSGVPTTPPQA---GGPPPPPAAVPGPGPGPKQ-------GP 202
Query: 311 RAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRG-------YLGPPHQGPP 363
P+G PGG P G G + P G G EPRG Y HQGPP
Sbjct: 203 GPGGPKGGKMPGGPKPGG--GPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPP 260
Query: 364 MHHASGHDTRGPSSHE 379
G S E
Sbjct: 261 PGGPGGRSEEKISDSE 276
Score = 60.1 bits (144), Expect = 6e-09
Identities = 67/229 (29%), Positives = 79/229 (34%), Gaps = 59/229 (25%)
Query: 203 GKSQSVSVSGPGP---GPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQ 259
G +Q+ GPGP GP P + P P QQ PP P ++P PP P Q
Sbjct: 39 GLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPP---PQQPPPHQPPPHPQPHQ 95
Query: 260 GGIPAPGPI----------PAAVPGAG---PGSLTPGGAMQPQLGMP---GVGPVPLERG 303
P P P P PG G P S + A P G P G GP P
Sbjct: 96 QQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPP 155
Query: 304 QVQMSDPRAP--------IPRGPVTPGGLPPRGLL----------GDAPNDPRGGTLL-- 343
V + P AP +P P GG PP G P P+GG +
Sbjct: 156 AVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGG 215
Query: 344 ----SVTGEVEPRGYLGPPHQG-----------PPMH--HASGHDTRGP 375
G P G+ PPH+G PP H H G GP
Sbjct: 216 PKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGP 264
Score = 40.4 bits (93), Expect = 0.005
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
+FVGN+P + TE++ K +F++ G + K KG+GF + + + A A L
Sbjct: 299 LFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAEL 352
Query: 78 NGREFSGRALRV 89
+ GR LRV
Sbjct: 353 DDTPMRGRQLRV 364
Score = 33.9 bits (76), Expect = 0.45
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 462 GPVPSSRGPMTGGIQGPGPINIGAGGPPQGPRQV----PGISGVGNPGAG-MQGTGIQGT 516
GP P+ +T G P + G P P Q P + V PG G QG G
Sbjct: 148 GPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPG--PG 205
Query: 517 GMQGAGIQGGGMQGAGIQGVSIQGGGIQGGGIQGASKQGGSQ 558
G +G + GG G G G+S GG + G +GG Q
Sbjct: 206 GPKGGKMPGGPKPGGG-PGLSTPGGHPKPPHRGGGEPRGGRQ 246
Score = 31.6 bits (70), Expect = 2.3
Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 465 PSSRGPMTGGIQGPGPINIGA--GGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAG 522
P + G G GP P A PP P P SGV G + G G
Sbjct: 136 PPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPG 195
Query: 523 IQGGGMQGAGIQGVSIQGGGIQGGGIQGASKQGGSQPSSFSPG 565
G QG G GG +GG + G K GG P +PG
Sbjct: 196 --PGPKQGPG-------PGGPKGGKMPGGPKPGGG-PGLSTPG 228
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 62.4 bits (150), Expect = 1e-09
Identities = 106/382 (27%), Positives = 139/382 (36%), Gaps = 76/382 (19%)
Query: 201 IPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQ-PQHLARRPVKDIPPLMQTPIQ 259
+ G+ S+ GP PGP PGP+ L P P P L P P IQ
Sbjct: 208 LKGEQSQASIQGPPGPPGP---PGPSGPLGHPGLPGPMGPPGLPGPP----GPKGDPGIQ 260
Query: 260 G--GIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRG 317
G G +P +PG PG A+ G PG+ E+G
Sbjct: 261 GYHGRKGERGMP-GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKG----------AEGS 309
Query: 318 PVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPP----------HQGPPMHHA 367
P PG L +G GDA N GG GE P G GPP GPP
Sbjct: 310 PGLPGLLGQKGEKGDAGNSIGGG-----RGEPGPPGLPGPPGPKGEAGVDGQVGPP-GQP 363
Query: 368 SGHDTRGPSSHEMRGGPLGDPRLLIGEP-RGPMIDQRGLPMDGRGGRDSRAMETRAMETE 426
RG + + GP G GEP +G M+D G +
Sbjct: 364 GDKGERGAAGEQGPDGPKGSK----GEPGKGEMVDYNG-----------------NINEA 402
Query: 427 VLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGP--GPINIG 484
+ E R + G + A G+ + E+ P P P G +GP P ++G
Sbjct: 403 LQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMG 458
Query: 485 AGGP--PQGPRQVPGISGV-GNPGA-GMQG----TGIQGTGMQGAGIQGGGMQGAGIQGV 536
GP P G PG+ G G+PG+ G +G TG G+ + G G G+QGV
Sbjct: 459 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGV 518
Query: 537 SIQGGGIQGGGIQGASKQGGSQ 558
G G+ GA + G Q
Sbjct: 519 P---GPKGEAGLDGAKGEKGFQ 537
Score = 45.4 bits (106), Expect = 2e-04
Identities = 72/265 (27%), Positives = 94/265 (35%), Gaps = 43/265 (16%)
Query: 251 PPLMQTPIQGGIPA-PGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSD 309
P L P G P PGPI PG G P G PG E+GQ
Sbjct: 130 PGLPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPP-GQPGPQGQKGEKGQC---- 184
Query: 310 PRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVE------PRGYLGPPHQGPP 363
G P R L P R ++++ GE P G GPP P
Sbjct: 185 ------------GEYPHRECLSSMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGP 232
Query: 364 MHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLP-MDGR-GGRDSRAMETR 421
+ H GP GP GDP + R +RG+P M G+ G + + +
Sbjct: 233 LGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRK---GERGMPGMPGKHGAKGAPGIAVA 289
Query: 422 AMETEVLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGPI 481
M+ E +G E + G+ L +G + + GG PGP
Sbjct: 290 GMKGEPGIPGTKGEKGAE----GSPGLPGL------LGQKGEKGDAGNSIGGGRGEPGP- 338
Query: 482 NIGAGGPPQGPRQVPGISG-VGNPG 505
G GPP GP+ G+ G VG PG
Sbjct: 339 -PGLPGPP-GPKGEAGVDGQVGPPG 361
Score = 38.9 bits (89), Expect = 0.014
Identities = 54/195 (27%), Positives = 63/195 (32%), Gaps = 53/195 (27%)
Query: 199 PLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPI 258
P IPG+ + + GP PG GP PP PQ P KD PP
Sbjct: 427 PGIPGQKGEIGLPGP---PGHDGEKGPRGKPGDMGPPGPQGP-----PGKDGPP------ 472
Query: 259 QGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGP 318
G+ P G PG E GQ P P P GP
Sbjct: 473 --GVKGENGHP---------------------GSPGEKGEKGETGQAGSPVPGLPGPEGP 509
Query: 319 VTPGGLP----PRGLLG-DAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTR 373
P GL P+G G D +G GE RG LG P P+
Sbjct: 510 PGPPGLQGVPGPKGEAGLDGAKGEKG-----FQGEKGDRGPLGLPGTPGPI------GVP 558
Query: 374 GPSSHEMRGGPLGDP 388
GP+ + G GDP
Sbjct: 559 GPAGPKGERGSKGDP 573
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 62.4 bits (150), Expect = 1e-09
Identities = 106/382 (27%), Positives = 139/382 (36%), Gaps = 76/382 (19%)
Query: 201 IPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQ-PQHLARRPVKDIPPLMQTPIQ 259
+ G+ S+ GP PGP PGP+ L P P P L P P IQ
Sbjct: 237 LKGEQSQASIQGPPGPPGP---PGPSGPLGHPGLPGPMGPPGLPGPP----GPKGDPGIQ 289
Query: 260 G--GIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRG 317
G G +P +PG PG A+ G PG+ E+G
Sbjct: 290 GYHGRKGERGMP-GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKG----------AEGS 338
Query: 318 PVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPP----------HQGPPMHHA 367
P PG L +G GDA N GG GE P G GPP GPP
Sbjct: 339 PGLPGLLGQKGEKGDAGNSIGGG-----RGEPGPPGLPGPPGPKGEAGVDGQVGPP-GQP 392
Query: 368 SGHDTRGPSSHEMRGGPLGDPRLLIGEP-RGPMIDQRGLPMDGRGGRDSRAMETRAMETE 426
RG + + GP G GEP +G M+D G +
Sbjct: 393 GDKGERGAAGEQGPDGPKGSK----GEPGKGEMVDYNG-----------------NINEA 431
Query: 427 VLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGP--GPINIG 484
+ E R + G + A G+ + E+ P P P G +GP P ++G
Sbjct: 432 LQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMG 487
Query: 485 AGGP--PQGPRQVPGISGV-GNPGA-GMQG----TGIQGTGMQGAGIQGGGMQGAGIQGV 536
GP P G PG+ G G+PG+ G +G TG G+ + G G G+QGV
Sbjct: 488 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGV 547
Query: 537 SIQGGGIQGGGIQGASKQGGSQ 558
G G+ GA + G Q
Sbjct: 548 P---GPKGEAGLDGAKGEKGFQ 566
Score = 47.0 bits (110), Expect = 5e-05
Identities = 81/294 (27%), Positives = 114/294 (38%), Gaps = 52/294 (17%)
Query: 246 PVKDIPPLMQTPI--------QGGIPAPGPIPAAVPG-AGPGSLTPGGAM-QPQL-GMPG 294
P + PP Q P +G I PG + + PG AG + P G QP G PG
Sbjct: 115 PGCNCPPAFQGPTGRPGLPGDKGAIGMPGRVGS--PGDAGLSIIGPRGPPGQPGTRGFPG 172
Query: 295 V-GPVPLE--------RGQVQMSDPRA-PIPRGPVTPGG----LPPRGLLGDAPNDPRGG 340
GP+ L+ +G + ++ P P P+G G P R L P R
Sbjct: 173 FPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSS 232
Query: 341 TLLSVTGEVE------PRGYLGPPHQGPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGE 394
++++ GE P G GPP P+ H GP GP GDP +
Sbjct: 233 QIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYH 292
Query: 395 PRGPMIDQRGLP-MDGR-GGRDSRAMETRAMETEVLETRVMERRGMETCAMETRGMEARG 452
R +RG+P M G+ G + + + M+ E +G E + G+
Sbjct: 293 GRK---GERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAE----GSPGLPGL- 344
Query: 453 MDARGLEMRGPVPSSRGPMTGGIQGPGPINIGAGGPPQGPRQVPGISG-VGNPG 505
L +G + + GG PGP G GPP GP+ G+ G VG PG
Sbjct: 345 -----LGQKGEKGDAGNSIGGGRGEPGP--PGLPGPP-GPKGEAGVDGQVGPPG 390
Score = 39.3 bits (90), Expect = 0.011
Identities = 60/223 (26%), Positives = 72/223 (32%), Gaps = 54/223 (24%)
Query: 199 PLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPI 258
P IPG+ + + GP PG GP PP PQ P KD PP
Sbjct: 456 PGIPGQKGEIGLPGP---PGHDGEKGPRGKPGDMGPPGPQGP-----PGKDGPP------ 501
Query: 259 QGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGP 318
G+ P G PG E GQ P P P GP
Sbjct: 502 --GVKGENGHP---------------------GSPGEKGEKGETGQAGSPVPGLPGPEGP 538
Query: 319 VTPGGLP----PRGLLG-DAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTR 373
P GL P+G G D +G GE RG LG P P+
Sbjct: 539 PGPPGLQGVPGPKGEAGLDGAKGEKG-----FQGEKGDRGPLGLPGTPGPI------GVP 587
Query: 374 GPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRDSR 416
GP+ + G GDP + + G P D +G R R
Sbjct: 588 GPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGD-KGNRGER 629
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 62.0 bits (149), Expect = 2e-09
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 DP-AMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66
DP A + +++FV + Y+ TE +L+ F G + +VY + +GKP+GY F EY+
Sbjct: 94 DPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEH 153
Query: 67 QETALSAMRNLNGREFSGRALRVD 90
+ SA ++ +G++ GR + VD
Sbjct: 154 ERDMHSAYKHADGKKIDGRRVLVD 177
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 62.0 bits (149), Expect = 2e-09
Identities = 106/380 (27%), Positives = 138/380 (36%), Gaps = 76/380 (20%)
Query: 203 GKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQ-PQHLARRPVKDIPPLMQTPIQG- 260
G+ S+ GP PGP PGP+ L P P P L P P IQG
Sbjct: 261 GEQSQASIQGPPGPPGP---PGPSGPLGHPGLPGPMGPPGLPGPP----GPKGDPGIQGY 313
Query: 261 -GIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPV 319
G +P +PG PG A+ G PG+ E+G P
Sbjct: 314 HGRKGERGMP-GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKG----------AEGSPG 362
Query: 320 TPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPP----------HQGPPMHHASG 369
PG L +G GDA N GG GE P G GPP GPP
Sbjct: 363 LPGLLGQKGEKGDAGNSIGGG-----RGEPGPPGLPGPPGPKGEAGVDGQVGPP-GQPGD 416
Query: 370 HDTRGPSSHEMRGGPLGDPRLLIGEP-RGPMIDQRGLPMDGRGGRDSRAMETRAMETEVL 428
RG + + GP G GEP +G M+D G + +
Sbjct: 417 KGERGAAGEQGPDGPKGSK----GEPGKGEMVDYNG-----------------NINEALQ 455
Query: 429 ETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGP--GPINIGAG 486
E R + G + A G+ + E+ P P P G +GP P ++G
Sbjct: 456 EIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPP 511
Query: 487 GP--PQGPRQVPGISGV-GNPGA-GMQG----TGIQGTGMQGAGIQGGGMQGAGIQGVSI 538
GP P G PG+ G G+PG+ G +G TG G+ + G G G+QGV
Sbjct: 512 GPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGVP- 570
Query: 539 QGGGIQGGGIQGASKQGGSQ 558
G G+ GA + G Q
Sbjct: 571 --GPKGEAGLDGAKGEKGFQ 588
Score = 39.3 bits (90), Expect = 0.011
Identities = 60/223 (26%), Positives = 72/223 (32%), Gaps = 54/223 (24%)
Query: 199 PLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPI 258
P IPG+ + + GP PG GP PP PQ P KD PP
Sbjct: 478 PGIPGQKGEIGLPGP---PGHDGEKGPRGKPGDMGPPGPQGP-----PGKDGPP------ 523
Query: 259 QGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGP 318
G+ P G PG E GQ P P P GP
Sbjct: 524 --GVKGENGHP---------------------GSPGEKGEKGETGQAGSPVPGLPGPEGP 560
Query: 319 VTPGGLP----PRGLLG-DAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTR 373
P GL P+G G D +G GE RG LG P P+
Sbjct: 561 PGPPGLQGVPGPKGEAGLDGAKGEKG-----FQGEKGDRGPLGLPGTPGPI------GVP 609
Query: 374 GPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRDSR 416
GP+ + G GDP + + G P D +G R R
Sbjct: 610 GPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGD-KGNRGER 651
>gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens]
Length = 702
Score = 62.0 bits (149), Expect = 2e-09
Identities = 106/380 (27%), Positives = 138/380 (36%), Gaps = 76/380 (20%)
Query: 203 GKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQ-PQHLARRPVKDIPPLMQTPIQG- 260
G+ S+ GP PGP PGP+ L P P P L P P IQG
Sbjct: 261 GEQSQASIQGPPGPPGP---PGPSGPLGHPGLPGPMGPPGLPGPP----GPKGDPGIQGY 313
Query: 261 -GIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPV 319
G +P +PG PG A+ G PG+ E+G P
Sbjct: 314 HGRKGERGMP-GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKG----------AEGSPG 362
Query: 320 TPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPP----------HQGPPMHHASG 369
PG L +G GDA N GG GE P G GPP GPP
Sbjct: 363 LPGLLGQKGEKGDAGNSIGGG-----RGEPGPPGLPGPPGPKGEAGVDGQVGPP-GQPGD 416
Query: 370 HDTRGPSSHEMRGGPLGDPRLLIGEP-RGPMIDQRGLPMDGRGGRDSRAMETRAMETEVL 428
RG + + GP G GEP +G M+D G + +
Sbjct: 417 KGERGAAGEQGPDGPKGSK----GEPGKGEMVDYNG-----------------NINEALQ 455
Query: 429 ETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGP--GPINIGAG 486
E R + G + A G+ + E+ P P P G +GP P ++G
Sbjct: 456 EIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPP 511
Query: 487 GP--PQGPRQVPGISGV-GNPGA-GMQG----TGIQGTGMQGAGIQGGGMQGAGIQGVSI 538
GP P G PG+ G G+PG+ G +G TG G+ + G G G+QGV
Sbjct: 512 GPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGVP- 570
Query: 539 QGGGIQGGGIQGASKQGGSQ 558
G G+ GA + G Q
Sbjct: 571 --GPKGEAGLDGAKGEKGFQ 588
Score = 46.2 bits (108), Expect = 9e-05
Identities = 67/236 (28%), Positives = 87/236 (36%), Gaps = 40/236 (16%)
Query: 199 PLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPI 258
P IPG+ + + GP PG GP PP PQ P KD PP ++
Sbjct: 478 PGIPGQKGEIGLPGP---PGHDGEKGPRGKPGDMGPPGPQGP-----PGKDGPPGVKG-- 527
Query: 259 QGGIP-APGPIPAAVPGAGPGSLTPG--GAMQPQLGMPGVGPVPLERGQVQMSDPRAPI- 314
+ G P +PG GS PG G P G PG+ VP +G+ + +
Sbjct: 528 ENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPP-GPPGLQGVPGPKGEAGLDGAKGEKG 586
Query: 315 ---PRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLG----PPHQGP----- 362
+G P GLP L P P + V G P+G G P GP
Sbjct: 587 FQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAG 646
Query: 363 -PMHHASGHD--TRGPSSHEMRGGPLGDPRLLIGEPRGPMID------QRGLPMDG 409
P H D RG + GP GD G+ P +D + GLP+ G
Sbjct: 647 LPGLHGPPGDKGNRGERGKKGSRGPKGDK----GDQGAPGLDAPCPLGEDGLPVQG 698
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 61.6 bits (148), Expect = 2e-09
Identities = 74/286 (25%), Positives = 107/286 (37%), Gaps = 33/286 (11%)
Query: 251 PPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGA---MQPQLGMPGVG-PVPLER--GQ 304
PPL TP G P PGP P A+ G PG +PG A M P G P G P+P + G
Sbjct: 6 PPLGGTPRPGPSPGPGPSPGAMLGPSPGP-SPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 305 VQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPM 364
Q + + P + G+ +DPR + + +GPP P
Sbjct: 65 PQDNMHQMHKPMESMHEKGMS---------DDPRYNQMKGMGMRSGGHAGMGPP-PSPMD 114
Query: 365 HHASGHDTR-GPSSHEMR----GGPLGDPRLLIGEPRGPM--IDQRGLPMDGRGGRDSRA 417
H+ G+ + G S H GP P++ G P+ D + L RG
Sbjct: 115 QHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
Query: 418 METRAMETEVLETRVMERRGM--ETCAMETRGMEAR-GMDARGLEMRGPVPSSRGPMTGG 474
+ + +++ +++ R + M +G GM + + P S+ GP G
Sbjct: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGP 234
Query: 475 IQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQG 520
GPGP GP P G+G P G GM G
Sbjct: 235 GPGPGP------GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG 274
Score = 55.8 bits (133), Expect = 1e-07
Identities = 41/129 (31%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 199 PLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPI 258
P +P S S + GPGPGPGPG PGP N P ++ +PP M
Sbjct: 218 PTLPPPSVSATGPGPGPGPGPGPGPGP-APPNYSRPHGMGGPNMPPPGPSGVPPGMPGQP 276
Query: 259 QGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQ-LGMPGVGPVPLERGQVQMSDPRAPIPRG 317
GG P P P A P S TP + PQ G P P + + P+ P
Sbjct: 277 PGGPPKPWPEGPMANAAAPTS-TPQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQ 335
Query: 318 PVTPGGLPP 326
P P + P
Sbjct: 336 PAQPAPMVP 344
Score = 50.1 bits (118), Expect = 6e-06
Identities = 86/309 (27%), Positives = 109/309 (35%), Gaps = 62/309 (20%)
Query: 213 PGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGGIPAPGPIPAA- 271
P PGP PG P P +L P+P H + G P+PGP A
Sbjct: 12 PRPGPSPGPGPSPGAMLGPSPGPSPGSAH---------------SMMG--PSPGPPSAGH 54
Query: 272 -VPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVTPGGLPPRGLL 330
+P GPG Q M + E+G DPR +G G
Sbjct: 55 PIPTQGPGGYPQDNMHQMHKPMESMH----EKG--MSDDPRYNQMKGMGMRSG------- 101
Query: 331 GDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSS-HEMRGGPLG--- 386
G A P + + +GY P G H +S GPSS +M GP G
Sbjct: 102 GHAGMGPPPSPM-----DQHSQGY--PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPL 154
Query: 387 ---DPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMETRAME-TEVLETRVMERRGMETCA 442
DP+ L + RGP + R + M R + L+ V +R M
Sbjct: 155 DGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQ 214
Query: 443 METRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGPINI----GAGGPPQGPRQVPGI 498
+ + + A G GP P GP G GP P N G GGP P PG
Sbjct: 215 QQMPTLPPPSVSATG---PGPGP---GPGPGPGPGPAPPNYSRPHGMGGPNMPP---PGP 265
Query: 499 SGV--GNPG 505
SGV G PG
Sbjct: 266 SGVPPGMPG 274
Score = 45.8 bits (107), Expect = 1e-04
Identities = 52/180 (28%), Positives = 66/180 (36%), Gaps = 49/180 (27%)
Query: 192 HRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPN---------VLLNQQN-PPAPQPQ- 240
H + + +PL + S V GP GP + GP L QQN P P Q
Sbjct: 116 HSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQN 175
Query: 241 --HLARRPV---------KDIPPLMQTPIQGGIPAPG-----------PIPAAVPGAGPG 278
H R + + +P +Q +QG P PG + A PG GPG
Sbjct: 176 QLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG 235
Query: 279 SLTPGGAMQPQLGMPGVGPVPLERGQVQ-MSDPRAPIPRGPVTPGGLPPRGLLGDAPNDP 337
PG PG GP P + M P P P P G+PP G+ G P P
Sbjct: 236 ---PGPG-------PGPGPAPPNYSRPHGMGGPNMP----PPGPSGVPP-GMPGQPPGGP 280
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 61.6 bits (148), Expect = 2e-09
Identities = 74/286 (25%), Positives = 107/286 (37%), Gaps = 33/286 (11%)
Query: 251 PPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGA---MQPQLGMPGVG-PVPLER--GQ 304
PPL TP G P PGP P A+ G PG +PG A M P G P G P+P + G
Sbjct: 6 PPLGGTPRPGPSPGPGPSPGAMLGPSPGP-SPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 305 VQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPM 364
Q + + P + G+ +DPR + + +GPP P
Sbjct: 65 PQDNMHQMHKPMESMHEKGMS---------DDPRYNQMKGMGMRSGGHAGMGPP-PSPMD 114
Query: 365 HHASGHDTR-GPSSHEMR----GGPLGDPRLLIGEPRGPM--IDQRGLPMDGRGGRDSRA 417
H+ G+ + G S H GP P++ G P+ D + L RG
Sbjct: 115 QHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
Query: 418 METRAMETEVLETRVMERRGM--ETCAMETRGMEAR-GMDARGLEMRGPVPSSRGPMTGG 474
+ + +++ +++ R + M +G GM + + P S+ GP G
Sbjct: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGP 234
Query: 475 IQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQG 520
GPGP GP P G+G P G GM G
Sbjct: 235 GPGPGP------GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG 274
Score = 55.8 bits (133), Expect = 1e-07
Identities = 41/129 (31%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 199 PLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPI 258
P +P S S + GPGPGPGPG PGP N P ++ +PP M
Sbjct: 218 PTLPPPSVSATGPGPGPGPGPGPGPGP-APPNYSRPHGMGGPNMPPPGPSGVPPGMPGQP 276
Query: 259 QGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQ-LGMPGVGPVPLERGQVQMSDPRAPIPRG 317
GG P P P A P S TP + PQ G P P + + P+ P
Sbjct: 277 PGGPPKPWPEGPMANAAAPTS-TPQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQ 335
Query: 318 PVTPGGLPP 326
P P + P
Sbjct: 336 PAQPAPMVP 344
Score = 50.1 bits (118), Expect = 6e-06
Identities = 86/309 (27%), Positives = 109/309 (35%), Gaps = 62/309 (20%)
Query: 213 PGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGGIPAPGPIPAA- 271
P PGP PG P P +L P+P H + G P+PGP A
Sbjct: 12 PRPGPSPGPGPSPGAMLGPSPGPSPGSAH---------------SMMG--PSPGPPSAGH 54
Query: 272 -VPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVTPGGLPPRGLL 330
+P GPG Q M + E+G DPR +G G
Sbjct: 55 PIPTQGPGGYPQDNMHQMHKPMESMH----EKG--MSDDPRYNQMKGMGMRSG------- 101
Query: 331 GDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSS-HEMRGGPLG--- 386
G A P + + +GY P G H +S GPSS +M GP G
Sbjct: 102 GHAGMGPPPSPM-----DQHSQGY--PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPL 154
Query: 387 ---DPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMETRAME-TEVLETRVMERRGMETCA 442
DP+ L + RGP + R + M R + L+ V +R M
Sbjct: 155 DGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQ 214
Query: 443 METRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGPINI----GAGGPPQGPRQVPGI 498
+ + + A G GP P GP G GP P N G GGP P PG
Sbjct: 215 QQMPTLPPPSVSATG---PGPGP---GPGPGPGPGPAPPNYSRPHGMGGPNMPP---PGP 265
Query: 499 SGV--GNPG 505
SGV G PG
Sbjct: 266 SGVPPGMPG 274
Score = 45.8 bits (107), Expect = 1e-04
Identities = 52/180 (28%), Positives = 66/180 (36%), Gaps = 49/180 (27%)
Query: 192 HRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPN---------VLLNQQN-PPAPQPQ- 240
H + + +PL + S V GP GP + GP L QQN P P Q
Sbjct: 116 HSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQN 175
Query: 241 --HLARRPV---------KDIPPLMQTPIQGGIPAPG-----------PIPAAVPGAGPG 278
H R + + +P +Q +QG P PG + A PG GPG
Sbjct: 176 QLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG 235
Query: 279 SLTPGGAMQPQLGMPGVGPVPLERGQVQ-MSDPRAPIPRGPVTPGGLPPRGLLGDAPNDP 337
PG PG GP P + M P P P P G+PP G+ G P P
Sbjct: 236 ---PGPG-------PGPGPAPPNYSRPHGMGGPNMP----PPGPSGVPP-GMPGQPPGGP 280
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 61.6 bits (148), Expect = 2e-09
Identities = 74/286 (25%), Positives = 107/286 (37%), Gaps = 33/286 (11%)
Query: 251 PPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGA---MQPQLGMPGVG-PVPLER--GQ 304
PPL TP G P PGP P A+ G PG +PG A M P G P G P+P + G
Sbjct: 6 PPLGGTPRPGPSPGPGPSPGAMLGPSPGP-SPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 305 VQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPM 364
Q + + P + G+ +DPR + + +GPP P
Sbjct: 65 PQDNMHQMHKPMESMHEKGMS---------DDPRYNQMKGMGMRSGGHAGMGPP-PSPMD 114
Query: 365 HHASGHDTR-GPSSHEMR----GGPLGDPRLLIGEPRGPM--IDQRGLPMDGRGGRDSRA 417
H+ G+ + G S H GP P++ G P+ D + L RG
Sbjct: 115 QHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
Query: 418 METRAMETEVLETRVMERRGM--ETCAMETRGMEAR-GMDARGLEMRGPVPSSRGPMTGG 474
+ + +++ +++ R + M +G GM + + P S+ GP G
Sbjct: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGP 234
Query: 475 IQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQG 520
GPGP GP P G+G P G GM G
Sbjct: 235 GPGPGP------GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG 274
Score = 55.8 bits (133), Expect = 1e-07
Identities = 41/129 (31%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 199 PLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPI 258
P +P S S + GPGPGPGPG PGP N P ++ +PP M
Sbjct: 218 PTLPPPSVSATGPGPGPGPGPGPGPGP-APPNYSRPHGMGGPNMPPPGPSGVPPGMPGQP 276
Query: 259 QGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQ-LGMPGVGPVPLERGQVQMSDPRAPIPRG 317
GG P P P A P S TP + PQ G P P + + P+ P
Sbjct: 277 PGGPPKPWPEGPMANAAAPTS-TPQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQ 335
Query: 318 PVTPGGLPP 326
P P + P
Sbjct: 336 PAQPAPMVP 344
Score = 50.1 bits (118), Expect = 6e-06
Identities = 86/309 (27%), Positives = 109/309 (35%), Gaps = 62/309 (20%)
Query: 213 PGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGGIPAPGPIPAA- 271
P PGP PG P P +L P+P H + G P+PGP A
Sbjct: 12 PRPGPSPGPGPSPGAMLGPSPGPSPGSAH---------------SMMG--PSPGPPSAGH 54
Query: 272 -VPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVTPGGLPPRGLL 330
+P GPG Q M + E+G DPR +G G
Sbjct: 55 PIPTQGPGGYPQDNMHQMHKPMESMH----EKG--MSDDPRYNQMKGMGMRSG------- 101
Query: 331 GDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSS-HEMRGGPLG--- 386
G A P + + +GY P G H +S GPSS +M GP G
Sbjct: 102 GHAGMGPPPSPM-----DQHSQGY--PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPL 154
Query: 387 ---DPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMETRAME-TEVLETRVMERRGMETCA 442
DP+ L + RGP + R + M R + L+ V +R M
Sbjct: 155 DGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQ 214
Query: 443 METRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGPINI----GAGGPPQGPRQVPGI 498
+ + + A G GP P GP G GP P N G GGP P PG
Sbjct: 215 QQMPTLPPPSVSATG---PGPGP---GPGPGPGPGPAPPNYSRPHGMGGPNMPP---PGP 265
Query: 499 SGV--GNPG 505
SGV G PG
Sbjct: 266 SGVPPGMPG 274
Score = 45.8 bits (107), Expect = 1e-04
Identities = 52/180 (28%), Positives = 66/180 (36%), Gaps = 49/180 (27%)
Query: 192 HRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPN---------VLLNQQN-PPAPQPQ- 240
H + + +PL + S V GP GP + GP L QQN P P Q
Sbjct: 116 HSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQN 175
Query: 241 --HLARRPV---------KDIPPLMQTPIQGGIPAPG-----------PIPAAVPGAGPG 278
H R + + +P +Q +QG P PG + A PG GPG
Sbjct: 176 QLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG 235
Query: 279 SLTPGGAMQPQLGMPGVGPVPLERGQVQ-MSDPRAPIPRGPVTPGGLPPRGLLGDAPNDP 337
PG PG GP P + M P P P P G+PP G+ G P P
Sbjct: 236 ---PGPG-------PGPGPAPPNYSRPHGMGGPNMP----PPGPSGVPP-GMPGQPPGGP 280
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 61.6 bits (148), Expect = 2e-09
Identities = 74/286 (25%), Positives = 107/286 (37%), Gaps = 33/286 (11%)
Query: 251 PPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGA---MQPQLGMPGVG-PVPLER--GQ 304
PPL TP G P PGP P A+ G PG +PG A M P G P G P+P + G
Sbjct: 6 PPLGGTPRPGPSPGPGPSPGAMLGPSPGP-SPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 305 VQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPM 364
Q + + P + G+ +DPR + + +GPP P
Sbjct: 65 PQDNMHQMHKPMESMHEKGMS---------DDPRYNQMKGMGMRSGGHAGMGPP-PSPMD 114
Query: 365 HHASGHDTR-GPSSHEMR----GGPLGDPRLLIGEPRGPM--IDQRGLPMDGRGGRDSRA 417
H+ G+ + G S H GP P++ G P+ D + L RG
Sbjct: 115 QHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
Query: 418 METRAMETEVLETRVMERRGM--ETCAMETRGMEAR-GMDARGLEMRGPVPSSRGPMTGG 474
+ + +++ +++ R + M +G GM + + P S+ GP G
Sbjct: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGP 234
Query: 475 IQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQG 520
GPGP GP P G+G P G GM G
Sbjct: 235 GPGPGP------GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG 274
Score = 55.8 bits (133), Expect = 1e-07
Identities = 41/129 (31%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 199 PLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPI 258
P +P S S + GPGPGPGPG PGP N P ++ +PP M
Sbjct: 218 PTLPPPSVSATGPGPGPGPGPGPGPGP-APPNYSRPHGMGGPNMPPPGPSGVPPGMPGQP 276
Query: 259 QGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQ-LGMPGVGPVPLERGQVQMSDPRAPIPRG 317
GG P P P A P S TP + PQ G P P + + P+ P
Sbjct: 277 PGGPPKPWPEGPMANAAAPTS-TPQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQ 335
Query: 318 PVTPGGLPP 326
P P + P
Sbjct: 336 PAQPAPMVP 344
Score = 50.1 bits (118), Expect = 6e-06
Identities = 86/309 (27%), Positives = 109/309 (35%), Gaps = 62/309 (20%)
Query: 213 PGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGGIPAPGPIPAA- 271
P PGP PG P P +L P+P H + G P+PGP A
Sbjct: 12 PRPGPSPGPGPSPGAMLGPSPGPSPGSAH---------------SMMG--PSPGPPSAGH 54
Query: 272 -VPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVTPGGLPPRGLL 330
+P GPG Q M + E+G DPR +G G
Sbjct: 55 PIPTQGPGGYPQDNMHQMHKPMESMH----EKG--MSDDPRYNQMKGMGMRSG------- 101
Query: 331 GDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSS-HEMRGGPLG--- 386
G A P + + +GY P G H +S GPSS +M GP G
Sbjct: 102 GHAGMGPPPSPM-----DQHSQGY--PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPL 154
Query: 387 ---DPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMETRAME-TEVLETRVMERRGMETCA 442
DP+ L + RGP + R + M R + L+ V +R M
Sbjct: 155 DGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQ 214
Query: 443 METRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGPINI----GAGGPPQGPRQVPGI 498
+ + + A G GP P GP G GP P N G GGP P PG
Sbjct: 215 QQMPTLPPPSVSATG---PGPGP---GPGPGPGPGPAPPNYSRPHGMGGPNMPP---PGP 265
Query: 499 SGV--GNPG 505
SGV G PG
Sbjct: 266 SGVPPGMPG 274
Score = 45.8 bits (107), Expect = 1e-04
Identities = 52/180 (28%), Positives = 66/180 (36%), Gaps = 49/180 (27%)
Query: 192 HRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPN---------VLLNQQN-PPAPQPQ- 240
H + + +PL + S V GP GP + GP L QQN P P Q
Sbjct: 116 HSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQN 175
Query: 241 --HLARRPV---------KDIPPLMQTPIQGGIPAPG-----------PIPAAVPGAGPG 278
H R + + +P +Q +QG P PG + A PG GPG
Sbjct: 176 QLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG 235
Query: 279 SLTPGGAMQPQLGMPGVGPVPLERGQVQ-MSDPRAPIPRGPVTPGGLPPRGLLGDAPNDP 337
PG PG GP P + M P P P P G+PP G+ G P P
Sbjct: 236 ---PGPG-------PGPGPAPPNYSRPHGMGGPNMP----PPGPSGVPP-GMPGQPPGGP 280
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 61.6 bits (148), Expect = 2e-09
Identities = 74/286 (25%), Positives = 107/286 (37%), Gaps = 33/286 (11%)
Query: 251 PPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGA---MQPQLGMPGVG-PVPLER--GQ 304
PPL TP G P PGP P A+ G PG +PG A M P G P G P+P + G
Sbjct: 6 PPLGGTPRPGPSPGPGPSPGAMLGPSPGP-SPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 305 VQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPM 364
Q + + P + G+ +DPR + + +GPP P
Sbjct: 65 PQDNMHQMHKPMESMHEKGMS---------DDPRYNQMKGMGMRSGGHAGMGPP-PSPMD 114
Query: 365 HHASGHDTR-GPSSHEMR----GGPLGDPRLLIGEPRGPM--IDQRGLPMDGRGGRDSRA 417
H+ G+ + G S H GP P++ G P+ D + L RG
Sbjct: 115 QHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
Query: 418 METRAMETEVLETRVMERRGM--ETCAMETRGMEAR-GMDARGLEMRGPVPSSRGPMTGG 474
+ + +++ +++ R + M +G GM + + P S+ GP G
Sbjct: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGP 234
Query: 475 IQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQG 520
GPGP GP P G+G P G GM G
Sbjct: 235 GPGPGP------GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG 274
Score = 55.8 bits (133), Expect = 1e-07
Identities = 41/129 (31%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 199 PLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPI 258
P +P S S + GPGPGPGPG PGP N P ++ +PP M
Sbjct: 218 PTLPPPSVSATGPGPGPGPGPGPGPGP-APPNYSRPHGMGGPNMPPPGPSGVPPGMPGQP 276
Query: 259 QGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQ-LGMPGVGPVPLERGQVQMSDPRAPIPRG 317
GG P P P A P S TP + PQ G P P + + P+ P
Sbjct: 277 PGGPPKPWPEGPMANAAAPTS-TPQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQ 335
Query: 318 PVTPGGLPP 326
P P + P
Sbjct: 336 PAQPAPMVP 344
Score = 50.1 bits (118), Expect = 6e-06
Identities = 86/309 (27%), Positives = 109/309 (35%), Gaps = 62/309 (20%)
Query: 213 PGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGGIPAPGPIPAA- 271
P PGP PG P P +L P+P H + G P+PGP A
Sbjct: 12 PRPGPSPGPGPSPGAMLGPSPGPSPGSAH---------------SMMG--PSPGPPSAGH 54
Query: 272 -VPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVTPGGLPPRGLL 330
+P GPG Q M + E+G DPR +G G
Sbjct: 55 PIPTQGPGGYPQDNMHQMHKPMESMH----EKG--MSDDPRYNQMKGMGMRSG------- 101
Query: 331 GDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSS-HEMRGGPLG--- 386
G A P + + +GY P G H +S GPSS +M GP G
Sbjct: 102 GHAGMGPPPSPM-----DQHSQGY--PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPL 154
Query: 387 ---DPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMETRAME-TEVLETRVMERRGMETCA 442
DP+ L + RGP + R + M R + L+ V +R M
Sbjct: 155 DGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQ 214
Query: 443 METRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGPINI----GAGGPPQGPRQVPGI 498
+ + + A G GP P GP G GP P N G GGP P PG
Sbjct: 215 QQMPTLPPPSVSATG---PGPGP---GPGPGPGPGPAPPNYSRPHGMGGPNMPP---PGP 265
Query: 499 SGV--GNPG 505
SGV G PG
Sbjct: 266 SGVPPGMPG 274
Score = 45.8 bits (107), Expect = 1e-04
Identities = 52/180 (28%), Positives = 66/180 (36%), Gaps = 49/180 (27%)
Query: 192 HRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPN---------VLLNQQN-PPAPQPQ- 240
H + + +PL + S V GP GP + GP L QQN P P Q
Sbjct: 116 HSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQN 175
Query: 241 --HLARRPV---------KDIPPLMQTPIQGGIPAPG-----------PIPAAVPGAGPG 278
H R + + +P +Q +QG P PG + A PG GPG
Sbjct: 176 QLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG 235
Query: 279 SLTPGGAMQPQLGMPGVGPVPLERGQVQ-MSDPRAPIPRGPVTPGGLPPRGLLGDAPNDP 337
PG PG GP P + M P P P P G+PP G+ G P P
Sbjct: 236 ---PGPG-------PGPGPAPPNYSRPHGMGGPNMP----PPGPSGVPP-GMPGQPPGGP 280
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 61.6 bits (148), Expect = 2e-09
Identities = 74/286 (25%), Positives = 107/286 (37%), Gaps = 33/286 (11%)
Query: 251 PPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGA---MQPQLGMPGVG-PVPLER--GQ 304
PPL TP G P PGP P A+ G PG +PG A M P G P G P+P + G
Sbjct: 6 PPLGGTPRPGPSPGPGPSPGAMLGPSPGP-SPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 305 VQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPM 364
Q + + P + G+ +DPR + + +GPP P
Sbjct: 65 PQDNMHQMHKPMESMHEKGMS---------DDPRYNQMKGMGMRSGGHAGMGPP-PSPMD 114
Query: 365 HHASGHDTR-GPSSHEMR----GGPLGDPRLLIGEPRGPM--IDQRGLPMDGRGGRDSRA 417
H+ G+ + G S H GP P++ G P+ D + L RG
Sbjct: 115 QHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
Query: 418 METRAMETEVLETRVMERRGM--ETCAMETRGMEAR-GMDARGLEMRGPVPSSRGPMTGG 474
+ + +++ +++ R + M +G GM + + P S+ GP G
Sbjct: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGP 234
Query: 475 IQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQG 520
GPGP GP P G+G P G GM G
Sbjct: 235 GPGPGP------GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG 274
Score = 55.8 bits (133), Expect = 1e-07
Identities = 41/129 (31%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 199 PLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPI 258
P +P S S + GPGPGPGPG PGP N P ++ +PP M
Sbjct: 218 PTLPPPSVSATGPGPGPGPGPGPGPGP-APPNYSRPHGMGGPNMPPPGPSGVPPGMPGQP 276
Query: 259 QGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQ-LGMPGVGPVPLERGQVQMSDPRAPIPRG 317
GG P P P A P S TP + PQ G P P + + P+ P
Sbjct: 277 PGGPPKPWPEGPMANAAAPTS-TPQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQ 335
Query: 318 PVTPGGLPP 326
P P + P
Sbjct: 336 PAQPAPMVP 344
Score = 50.1 bits (118), Expect = 6e-06
Identities = 86/309 (27%), Positives = 109/309 (35%), Gaps = 62/309 (20%)
Query: 213 PGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGGIPAPGPIPAA- 271
P PGP PG P P +L P+P H + G P+PGP A
Sbjct: 12 PRPGPSPGPGPSPGAMLGPSPGPSPGSAH---------------SMMG--PSPGPPSAGH 54
Query: 272 -VPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVTPGGLPPRGLL 330
+P GPG Q M + E+G DPR +G G
Sbjct: 55 PIPTQGPGGYPQDNMHQMHKPMESMH----EKG--MSDDPRYNQMKGMGMRSG------- 101
Query: 331 GDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSS-HEMRGGPLG--- 386
G A P + + +GY P G H +S GPSS +M GP G
Sbjct: 102 GHAGMGPPPSPM-----DQHSQGY--PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPL 154
Query: 387 ---DPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMETRAME-TEVLETRVMERRGMETCA 442
DP+ L + RGP + R + M R + L+ V +R M
Sbjct: 155 DGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQ 214
Query: 443 METRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGPINI----GAGGPPQGPRQVPGI 498
+ + + A G GP P GP G GP P N G GGP P PG
Sbjct: 215 QQMPTLPPPSVSATG---PGPGP---GPGPGPGPGPAPPNYSRPHGMGGPNMPP---PGP 265
Query: 499 SGV--GNPG 505
SGV G PG
Sbjct: 266 SGVPPGMPG 274
Score = 45.8 bits (107), Expect = 1e-04
Identities = 52/180 (28%), Positives = 66/180 (36%), Gaps = 49/180 (27%)
Query: 192 HRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPN---------VLLNQQN-PPAPQPQ- 240
H + + +PL + S V GP GP + GP L QQN P P Q
Sbjct: 116 HSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQN 175
Query: 241 --HLARRPV---------KDIPPLMQTPIQGGIPAPG-----------PIPAAVPGAGPG 278
H R + + +P +Q +QG P PG + A PG GPG
Sbjct: 176 QLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG 235
Query: 279 SLTPGGAMQPQLGMPGVGPVPLERGQVQ-MSDPRAPIPRGPVTPGGLPPRGLLGDAPNDP 337
PG PG GP P + M P P P P G+PP G+ G P P
Sbjct: 236 ---PGPG-------PGPGPAPPNYSRPHGMGGPNMP----PPGPSGVPP-GMPGQPPGGP 280
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,880,587
Number of Sequences: 37866
Number of extensions: 2335053
Number of successful extensions: 18595
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 1126
Number of HSP's that attempted gapping in prelim test: 9870
Number of HSP's gapped (non-prelim): 6238
length of query: 616
length of database: 18,247,518
effective HSP length: 108
effective length of query: 508
effective length of database: 14,157,990
effective search space: 7192258920
effective search space used: 7192258920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.