Guide to the Human Genome
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Name: PIGW Sequence: fasta or formatted (504aa) NCBI GI: 75750492
Description:

phosphatidylinositol glycan, class W

Referenced in:

GPI Anchoring

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         32           2
 C cysteine            2.4         12           1
 D aspartate           1.8          9           1
 E glutamate           3.6         18           1
 F phenylalanine       7.3         37           3
 G glycine             5.8         29           2
 H histidine           1.6          8           1
 I isoleucine          9.5         48           2
 K lysine              4.4         22           2
 L leucine            15.7         79           3
 M methionine          2.4         12           1
 N asparagine          3.6         18           1
 P proline             2.8         14           1
 Q glutamine           2.4         12           1
 R arginine            4.2         21           3
 S serine              7.3         37           2
 T threonine           6.0         30           2
 V valine              7.5         38           2
 W tryptophan          1.8          9           1
 Y tyrosine            3.8         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatidylinositol glycan, class W 
SLC9A1                0.010   solute carrier family 9, isoform A1 
NTSR2                 0.009   neurotensin receptor 2 
IL8RB                 0.007   interleukin 8 receptor beta 
SCN7A                 0.006   sodium channel, voltage-gated, type VII, alpha [Hom...
F2RL1                 0.005   coagulation factor II (thrombin) receptor-like 1 pre...
LOC100289996          0.005   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.005   PREDICTED: hypothetical protein XP_002343076 
SLC38A7               0.005   solute carrier family 38, member 7 
SLC10A5               0.005   solute carrier family 10 (sodium/bile acid cotranspo...
SLC35F2               0.004   solute carrier family 35, member F2 
OR6K6                 0.004   olfactory receptor, family 6, subfamily K, member 6 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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