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Search of human proteins with 89145413
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
(331 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 662 0.0
gi|87044888 short stature homeobox 2 isoform b [Homo sapiens] 368 e-102
gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens] 341 6e-94
gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens] 233 2e-61
gi|24497589 aristaless related homeobox [Homo sapiens] 108 9e-24
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 102 5e-22
gi|14149760 orthopedia homeobox [Homo sapiens] 102 5e-22
gi|7706659 paired related homeobox 2 [Homo sapiens] 101 1e-21
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 100 2e-21
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 99 7e-21
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 99 7e-21
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 99 7e-21
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 99 7e-21
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 99 7e-21
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 99 7e-21
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 97 2e-20
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 97 2e-20
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 97 3e-20
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 96 3e-20
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 96 3e-20
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 94 2e-19
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 94 2e-19
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 94 2e-19
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 94 2e-19
gi|46249382 paired-like homeobox 2a [Homo sapiens] 94 2e-19
gi|57232759 intestine-specific homeobox [Homo sapiens] 93 3e-19
gi|122937321 UNC homeobox [Homo sapiens] 93 4e-19
gi|12707580 paired-like homeobox 2b [Homo sapiens] 92 5e-19
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 92 6e-19
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 90 2e-18
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 662 bits (1708), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG 60
MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG
Sbjct: 1 MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG 60
Query: 61 GGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVSPEL 120
GGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVSPEL
Sbjct: 61 GGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVSPEL 120
Query: 121 KDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLS 180
KDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLS
Sbjct: 121 KDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLS 180
Query: 181 EARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNV 240
EARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNV
Sbjct: 181 EARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNV 240
Query: 241 TPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVV 300
TPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVV
Sbjct: 241 TPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVV 300
Query: 301 AAAAAAKTTSKNSSIADLRLKAKKHAAALGL 331
AAAAAAKTTSKNSSIADLRLKAKKHAAALGL
Sbjct: 301 AAAAAAKTTSKNSSIADLRLKAKKHAAALGL 331
>gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]
Length = 190
Score = 368 bits (944), Expect = e-102
Identities = 190/202 (94%), Positives = 190/202 (94%), Gaps = 12/202 (5%)
Query: 130 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ 189
MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ
Sbjct: 1 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ 60
Query: 190 NRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQA 249
NRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQ QVQA
Sbjct: 61 NRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQ------------QVQA 108
Query: 250 QLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTT 309
QLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTT
Sbjct: 109 QLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTT 168
Query: 310 SKNSSIADLRLKAKKHAAALGL 331
SKNSSIADLRLKAKKHAAALGL
Sbjct: 169 SKNSSIADLRLKAKKHAAALGL 190
>gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]
Length = 292
Score = 341 bits (874), Expect = 6e-94
Identities = 201/353 (56%), Positives = 231/353 (65%), Gaps = 83/353 (23%)
Query: 1 MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG 60
MEELTAFVSKSFDQK K+
Sbjct: 1 MEELTAFVSKSFDQKSKD------------------------------------------ 18
Query: 61 GGGGGGGGGGGGGG----------GGGVGGGGAGGGA---------GGGRSPV---RELD 98
G GGGGGGGG G+ G + GGG PV ++
Sbjct: 19 ---GNGGGGGGGGKKDSITYREVLESGLARSRELGTSDSSLQDITEGGGHCPVHLFKDHV 75
Query: 99 MGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERL 158
E+ +E G+ R+ E E K+++ED K +++GQTK+KQRRSRTNFTLEQLNELERL
Sbjct: 76 DNDKEKLKEFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERL 135
Query: 159 FDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACR 218
FDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQ+HKGV++G A+ +ACR
Sbjct: 136 FDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTANHLDACR 195
Query: 219 VAPYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFP 278
VAPYVN+GALRMPFQ QVQAQLQL+ VAHAH HLHPHLAAHAPY+MFP
Sbjct: 196 VAPYVNMGALRMPFQ------------QVQAQLQLE-GVAHAHPHLHPHLAAHAPYLMFP 242
Query: 279 APPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL 331
PPFGLP+A+L A+SASAA+VV AAAAK+ SKNSSIADLRLKA+KHA ALGL
Sbjct: 243 PPPFGLPIASL-AESASAAAVV--AAAAKSNSKNSSIADLRLKARKHAEALGL 292
>gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens]
Length = 225
Score = 233 bits (594), Expect = 2e-61
Identities = 135/264 (51%), Positives = 158/264 (59%), Gaps = 67/264 (25%)
Query: 1 MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG 60
MEELTAFVSKSFDQK K+
Sbjct: 1 MEELTAFVSKSFDQKSKD------------------------------------------ 18
Query: 61 GGGGGGGGGGGGGG----------GGGVGGGGAGGGA---------GGGRSPV---RELD 98
G GGGGGGGG G+ G + GGG PV ++
Sbjct: 19 ---GNGGGGGGGGKKDSITYREVLESGLARSRELGTSDSSLQDITEGGGHCPVHLFKDHV 75
Query: 99 MGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERL 158
E+ +E G+ R+ E E K+++ED K +++GQTK+KQRRSRTNFTLEQLNELERL
Sbjct: 76 DNDKEKLKEFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERL 135
Query: 159 FDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACR 218
FDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQ+HKGV++G A+ +ACR
Sbjct: 136 FDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTANHLDACR 195
Query: 219 VAPYVNVGALRMPFQQDSHCNVTP 242
VAPYVN+GALRMPFQQ C+ P
Sbjct: 196 VAPYVNMGALRMPFQQMEFCSCRP 219
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 108 bits (269), Expect = 9e-24
Identities = 93/259 (35%), Positives = 116/259 (44%), Gaps = 44/259 (16%)
Query: 115 EVSP--ELKDRKEDAKGME-------------DEGQTKIKQRRSRTNFTLEQLNELERLF 159
E+SP EL EDA+G + +EG K KQRR RT FT QL ELER F
Sbjct: 288 ELSPKEELLLHPEDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAF 347
Query: 160 DETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQEN---QLHKGVLIGAASQFEA 216
+THYPD F REEL+ RL L+EARVQVWFQNRRAK RK+E Q H L
Sbjct: 348 QKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPGLPFPGPLSAT 407
Query: 217 CRVAPYVN--------------------VGALRMPF--QQDSHCNVTPLSFQVQAQLQLD 254
++PY++ A P ++ P + L
Sbjct: 408 HPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLPPPPGSASLPPSGAPLGLSTFLG 467
Query: 255 SAVAHAHHHLHPH----LAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTS 310
+AV + P + AP L T A + A A+ +A A A
Sbjct: 468 AAVFRHPAFISPAFGRLFSTMAPLTSASTAAALLRQPTPAVEGAVASGALADPATAAADR 527
Query: 311 KNSSIADLRLKAKKHAAAL 329
+ SSIA LRLKAK+HAA L
Sbjct: 528 RASSIAALRLKAKEHAAQL 546
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 102 bits (254), Expect = 5e-22
Identities = 94/295 (31%), Positives = 132/295 (44%), Gaps = 46/295 (15%)
Query: 77 GVGGGGAGGGAGG---GRSPVRELDMGAAERSREPGS-PRLTEVSPELKDRKEDAKGMED 132
GVGG GG G PV + E GS P VS + D++ +G +
Sbjct: 32 GVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPN 91
Query: 133 EGQT-----KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVW 187
Q + KQ+R RT FT QLNELER F +THYPD FMREEL+ R+GL+E+RVQVW
Sbjct: 92 PSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVW 151
Query: 188 FQNRRAKCRKQENQLH----KGVLIGAAS--QFEACRVAPYVNVGALRMPFQQDSHCNVT 241
FQNRRAK +K++ + G L+ QF + A +G F H N T
Sbjct: 152 FQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSF----HANDT 207
Query: 242 PLSFQVQ---AQLQLDSAV----AHAHHHLHPHLAAHAP--------------------Y 274
+ +QL L A+ A A LAA P +
Sbjct: 208 RWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSH 267
Query: 275 MMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAAL 329
+ PA P +P + + S + + ++ + + +SIA LR KA +H ++
Sbjct: 268 LYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSM 322
>gi|14149760 orthopedia homeobox [Homo sapiens]
Length = 325
Score = 102 bits (254), Expect = 5e-22
Identities = 94/295 (31%), Positives = 132/295 (44%), Gaps = 46/295 (15%)
Query: 77 GVGGGGAGGGAGG---GRSPVRELDMGAAERSREPGS-PRLTEVSPELKDRKEDAKGMED 132
GVGG GG G PV + E GS P VS + D++ +G +
Sbjct: 32 GVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPN 91
Query: 133 EGQT-----KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVW 187
Q + KQ+R RT FT QLNELER F +THYPD FMREEL+ R+GL+E+RVQVW
Sbjct: 92 PSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVW 151
Query: 188 FQNRRAKCRKQENQLH----KGVLIGAAS--QFEACRVAPYVNVGALRMPFQQDSHCNVT 241
FQNRRAK +K++ + G L+ QF + A +G F H N T
Sbjct: 152 FQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSF----HANDT 207
Query: 242 PLSFQVQ---AQLQLDSAV----AHAHHHLHPHLAAHAP--------------------Y 274
+ +QL L A+ A A LAA P +
Sbjct: 208 RWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSH 267
Query: 275 MMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAAL 329
+ PA P +P + + S + + ++ + + +SIA LR KA +H ++
Sbjct: 268 LYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSM 322
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 101 bits (251), Expect = 1e-21
Identities = 61/126 (48%), Positives = 77/126 (61%), Gaps = 9/126 (7%)
Query: 78 VGGGGAGGGAGGGRSPVRELDMGAAERSREP-GSPRLTEVSPELKDRKEDAKGMEDEGQT 136
V G G R+ RE GAA REP G +E +P+ D + + G +
Sbjct: 49 VAAAGRLAARPGARAEARE---GAA---REPSGGSSGSEAAPQ--DGECPSPGRGSAAKR 100
Query: 137 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 196
K KQRR+RT F QL LER+F+ THYPDAF+REEL++R+ LSEARVQVWFQNRRAK R
Sbjct: 101 KKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFR 160
Query: 197 KQENQL 202
+ E +
Sbjct: 161 RNERAM 166
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 100 bits (248), Expect = 2e-21
Identities = 86/234 (36%), Positives = 113/234 (48%), Gaps = 43/234 (18%)
Query: 129 GMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWF 188
G ++G K KQRR RT+FT +QL ELE F YPD REE++ L+EARV+VWF
Sbjct: 51 GSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWF 110
Query: 189 QNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNV------------------GALRM 230
+NRRAK RK+E + G+ + V PY V A
Sbjct: 111 KNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTF 170
Query: 231 PFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAP---------P 281
PF +S NV PL+ Q S++A + + P AA AP + P P P
Sbjct: 171 PFAFNS-VNVGPLA--SQPVFSPPSSIAAS---MVPSAAA-APGTV-PGPGALQGLGGGP 222
Query: 282 FGLPLATLAADSASAASVVAAAAAAKTTSK--------NSSIADLRLKAKKHAA 327
GL A +++ + S AAAAAA S NSS+A LRLKAK+HA+
Sbjct: 223 PGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHAS 276
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 98.6 bits (244), Expect = 7e-21
Identities = 56/121 (46%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 88 GGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQT----KIKQRRS 143
G G +L+ AE S + + + E + +G + + + K KQRRS
Sbjct: 162 GKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRS 221
Query: 144 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQ--ENQ 201
RT FT EQL ELER F+ THYPD + REEL+QR L+EARVQVWF NRRA+ RKQ NQ
Sbjct: 222 RTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 281
Query: 202 L 202
L
Sbjct: 282 L 282
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 98.6 bits (244), Expect = 7e-21
Identities = 56/121 (46%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 88 GGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQT----KIKQRRS 143
G G +L+ AE S + + + E + +G + + + K KQRRS
Sbjct: 163 GKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRS 222
Query: 144 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQ--ENQ 201
RT FT EQL ELER F+ THYPD + REEL+QR L+EARVQVWF NRRA+ RKQ NQ
Sbjct: 223 RTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282
Query: 202 L 202
L
Sbjct: 283 L 283
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 98.6 bits (244), Expect = 7e-21
Identities = 56/121 (46%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 88 GGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQT----KIKQRRS 143
G G +L+ AE S + + + E + +G + + + K KQRRS
Sbjct: 163 GKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRS 222
Query: 144 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQ--ENQ 201
RT FT EQL ELER F+ THYPD + REEL+QR L+EARVQVWF NRRA+ RKQ NQ
Sbjct: 223 RTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282
Query: 202 L 202
L
Sbjct: 283 L 283
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 98.6 bits (244), Expect = 7e-21
Identities = 56/121 (46%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 88 GGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQT----KIKQRRS 143
G G +L+ AE S + + + E + +G + + + K KQRRS
Sbjct: 163 GKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRS 222
Query: 144 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQ--ENQ 201
RT FT EQL ELER F+ THYPD + REEL+QR L+EARVQVWF NRRA+ RKQ NQ
Sbjct: 223 RTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282
Query: 202 L 202
L
Sbjct: 283 L 283
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 98.6 bits (244), Expect = 7e-21
Identities = 56/121 (46%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 88 GGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQT----KIKQRRS 143
G G +L+ AE S + + + E + +G + + + K KQRRS
Sbjct: 163 GKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRS 222
Query: 144 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQ--ENQ 201
RT FT EQL ELER F+ THYPD + REEL+QR L+EARVQVWF NRRA+ RKQ NQ
Sbjct: 223 RTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282
Query: 202 L 202
L
Sbjct: 283 L 283
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 98.6 bits (244), Expect = 7e-21
Identities = 56/121 (46%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 88 GGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQT----KIKQRRS 143
G G +L+ AE S + + + E + +G + + + K KQRRS
Sbjct: 163 GKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRS 222
Query: 144 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQ--ENQ 201
RT FT EQL ELER F+ THYPD + REEL+QR L+EARVQVWF NRRA+ RKQ NQ
Sbjct: 223 RTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282
Query: 202 L 202
L
Sbjct: 283 L 283
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 97.1 bits (240), Expect = 2e-20
Identities = 84/253 (33%), Positives = 111/253 (43%), Gaps = 16/253 (6%)
Query: 92 SPVRELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQ 151
+P E + +EPG R + P + +AK E+E Q K K RR+RT FT Q
Sbjct: 90 APAPEYEAPRPYCPKEPGEARPSPGLP-VGPATGEAKLSEEE-QPKKKHRRNRTTFTTYQ 147
Query: 152 LNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAA 211
L+ELER F+++HYPD + REEL+ ++ L E RVQVWFQNRRAK R+QE + + +
Sbjct: 148 LHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDS 207
Query: 212 SQFEACRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHL----HPH 267
R P + L L + L A A L P
Sbjct: 208 PLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPA 267
Query: 268 LAAHAPYMMFPAPPFGL----------PLATLAADSASAASVVAAAAAAKTTSKNSSIAD 317
+ A Y P PP L PLA + +NSSIA
Sbjct: 268 QSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSIAA 327
Query: 318 LRLKAKKHAAALG 330
LRLKAK+H A+G
Sbjct: 328 LRLKAKEHIQAIG 340
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 97.1 bits (240), Expect = 2e-20
Identities = 81/274 (29%), Positives = 125/274 (45%), Gaps = 34/274 (12%)
Query: 82 GAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQTKI--- 138
G+ G + + P + E P S + S L ++ KG +D + +
Sbjct: 142 GSSGHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYLSVKEAGVKGPQDRASSDLPSP 201
Query: 139 -----------KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVW 187
K+RR+RT FT QL ELE++F +THYPD + RE+L+ R L+EARVQVW
Sbjct: 202 LEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVW 261
Query: 188 FQNRRAKCRKQE--NQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNVTPLSF 245
FQNRRAK RK+E Q+ + V ++ +E + N ++ P ++ +P+
Sbjct: 262 FQNRRAKWRKRERFGQMQQ-VRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPA 320
Query: 246 QVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAA 305
V + D A H HP + + F + A S+ AA+
Sbjct: 321 CV---VPCDPVPACMSPHAHPPGSGASSVTDF----LSVSGAGSHVGQTHMGSLFGAASL 373
Query: 306 A----------KTTSKNSSIADLRLKAKKHAAAL 329
+ + K SSIA LR+KAK+H+AA+
Sbjct: 374 SPGLNGYELNGEPDRKTSSIAALRMKAKEHSAAI 407
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 96.7 bits (239), Expect = 3e-20
Identities = 72/210 (34%), Positives = 101/210 (48%), Gaps = 16/210 (7%)
Query: 127 AKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQV 186
+ G D+G + KQRR+RT FTL+QL LE +F +THYPD F REEL+ ++ L+EARVQV
Sbjct: 25 SSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQV 84
Query: 187 WFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNVTPLSFQ 246
WFQNRRAK RK E GA P N+ + Q S
Sbjct: 85 WFQNRRAKWRKTERGA-SDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEA------ 137
Query: 247 VQAQLQLDSAVAHAHHHLHPHL-------AAHAPYMMFPAPPFGLPLATLAADSASAASV 299
++AQ L V A L A +A + A G PL + S
Sbjct: 138 LEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMGLSF 197
Query: 300 VAAAAAAKTTSKNSSIADLRLKAKKHAAAL 329
+ +++ +S+A LR+KA++H+ A+
Sbjct: 198 LPTYGC--QSNRTASVATLRMKAREHSEAV 225
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 96.3 bits (238), Expect = 3e-20
Identities = 54/113 (47%), Positives = 70/113 (61%), Gaps = 11/113 (9%)
Query: 98 DMGAAERSREPG--------SPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTL 149
DM AA+ G SP LT S ++D + E + K KQRR+RT F
Sbjct: 47 DMVAAQADENVGEAGRSLLESPGLTSGSDT---PQQDNDQLNSEEKKKRKQRRNRTTFNS 103
Query: 150 EQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQL 202
QL LER+F+ THYPDAF+RE+L++R+ L+EARVQVWFQNRRAK R+ E +
Sbjct: 104 SQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAM 156
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 96.3 bits (238), Expect = 3e-20
Identities = 54/113 (47%), Positives = 70/113 (61%), Gaps = 11/113 (9%)
Query: 98 DMGAAERSREPG--------SPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTL 149
DM AA+ G SP LT S ++D + E + K KQRR+RT F
Sbjct: 47 DMVAAQADENVGEAGRSLLESPGLTSGSDT---PQQDNDQLNSEEKKKRKQRRNRTTFNS 103
Query: 150 EQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQL 202
QL LER+F+ THYPDAF+RE+L++R+ L+EARVQVWFQNRRAK R+ E +
Sbjct: 104 SQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAM 156
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 93.6 bits (231), Expect = 2e-19
Identities = 50/85 (58%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
Query: 122 DRKEDAKGMEDEGQT--KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGL 179
+R ++ +E E K KQRRSRT FT EQL ELE+ F+ THYPD + REEL+QR L
Sbjct: 197 NRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKL 256
Query: 180 SEARVQVWFQNRRAKCRKQ--ENQL 202
+EARVQVWF NRRA+ RKQ NQL
Sbjct: 257 TEARVQVWFSNRRARWRKQAGANQL 281
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 93.6 bits (231), Expect = 2e-19
Identities = 50/85 (58%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
Query: 122 DRKEDAKGMEDEGQT--KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGL 179
+R ++ +E E K KQRRSRT FT EQL ELE+ F+ THYPD + REEL+QR L
Sbjct: 195 NRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKL 254
Query: 180 SEARVQVWFQNRRAKCRKQ--ENQL 202
+EARVQVWF NRRA+ RKQ NQL
Sbjct: 255 TEARVQVWFSNRRARWRKQAGANQL 279
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 93.6 bits (231), Expect = 2e-19
Identities = 50/85 (58%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
Query: 122 DRKEDAKGMEDEGQT--KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGL 179
+R ++ +E E K KQRRSRT FT EQL ELE+ F+ THYPD + REEL+QR L
Sbjct: 197 NRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKL 256
Query: 180 SEARVQVWFQNRRAKCRKQ--ENQL 202
+EARVQVWF NRRA+ RKQ NQL
Sbjct: 257 TEARVQVWFSNRRARWRKQAGANQL 281
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 93.6 bits (231), Expect = 2e-19
Identities = 80/243 (32%), Positives = 117/243 (48%), Gaps = 31/243 (12%)
Query: 109 GSPRLTEVSPELKD----RKEDAKGMEDEGQ------------TKIKQRRSRTNFTLEQL 152
G P TE++ + + R KGM+++G+ + K+RR RT FT QL
Sbjct: 85 GQPLHTELNRAMDNCNSLRMSPVKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQL 144
Query: 153 NELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAAS 212
ELE++F +THYPD ++RE+L+ R L+EARVQVWFQNRRAK RK+E G + A S
Sbjct: 145 EELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERY---GQIQQAKS 201
Query: 213 QFEA---CRVAPYVNVGALRMPFQQDS--HCNVTPLSFQVQAQLQLDSAVAHAHHHLHPH 267
F A V P + P Q++ N + S L D++ + P
Sbjct: 202 HFAATYDISVLPRTD----SYPQIQNNLWAGNASGGSVVTSCMLPRDTSSCMTPYSHSPR 257
Query: 268 L-AAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKT--TSKNSSIADLRLKAKK 324
+++ + +PL DS + A K ++SSIA LR+KAK+
Sbjct: 258 TDSSYTGFSNHQNQFSHVPLNNFFTDSLLTGATNGHAFETKPEFERRSSSIAVLRMKAKE 317
Query: 325 HAA 327
H A
Sbjct: 318 HTA 320
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 93.6 bits (231), Expect = 2e-19
Identities = 48/75 (64%), Positives = 54/75 (72%)
Query: 137 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 196
K KQRR RT FT QL ELER+F ETHYPD + REEL+ ++ L+EARVQVWFQNRRAK R
Sbjct: 87 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 146
Query: 197 KQENQLHKGVLIGAA 211
KQE GAA
Sbjct: 147 KQERAASAKGAAGAA 161
Score = 28.9 bits (63), Expect = 6.6
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 51 RSSPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVREL 97
R SP+ G G G G G G + G AGGG GG + EL
Sbjct: 204 RLSPSPLPVALGSGPGPGPGPQPLKGALWAGVAGGGGGGPGAGAAEL 250
>gi|57232759 intestine-specific homeobox [Homo sapiens]
Length = 245
Score = 93.2 bits (230), Expect = 3e-19
Identities = 75/197 (38%), Positives = 98/197 (49%), Gaps = 16/197 (8%)
Query: 91 RSPVRELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLE 150
+ P R DM +R PG E + ++ K EG+ +RR RT FT E
Sbjct: 38 KRPARRSDM---DRPEGPGEEGPGEAAASGSGLEKPPKDQPQEGRKS--KRRVRTTFTTE 92
Query: 151 QLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGA 210
QL+ELE++F THYPD +R +L+ R+ L EARVQ+WFQN+RAK RKQE K +GA
Sbjct: 93 QLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQE----KIGNLGA 148
Query: 211 ASQFEACRVAPYVNVGALRMPFQQDSHCNVT-PLSFQVQAQLQLDSAVAHAHHHLHPHLA 269
Q VA N+ + + + P S AQ QL SA A L P
Sbjct: 149 PQQLSEASVALPTNLDVAGPTWTSTALRRLAPPTSCCPSAQDQLASAWFPAWITLLP--- 205
Query: 270 AHAPYMMFPAPPFGLPL 286
AH P+ P P GLP+
Sbjct: 206 AH-PWETQPVP--GLPI 219
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 92.8 bits (229), Expect = 4e-19
Identities = 46/72 (63%), Positives = 55/72 (76%)
Query: 129 GMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWF 188
G D+ K+RR+RTNFT QL ELE+ F+E+HYPD FMRE L+ RL L E+RVQVWF
Sbjct: 94 GDPDKESPGCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWF 153
Query: 189 QNRRAKCRKQEN 200
QNRRAK RK+EN
Sbjct: 154 QNRRAKWRKKEN 165
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 92.4 bits (228), Expect = 5e-19
Identities = 45/63 (71%), Positives = 51/63 (80%)
Query: 137 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 196
K KQRR RT FT QL ELER+F ETHYPD + REEL+ ++ L+EARVQVWFQNRRAK R
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
Query: 197 KQE 199
KQE
Sbjct: 155 KQE 157
Score = 38.1 bits (87), Expect = 0.011
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 39 EPTGCTEAGRDDRSSPAVRAAGGGGGG------GGGGGGGGGGGGVGGGGAGGGAGGGRS 92
+P G + +P+ A GGGGGG G G GG GG G GGA A +
Sbjct: 191 DPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAA 250
Query: 93 PVRELDMGAAERSREPGSP 111
AA G P
Sbjct: 251 AAAAAAAAAAGGLAAAGGP 269
Score = 33.9 bits (76), Expect = 0.21
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 37 AKEPTGCTEAGRDDRSSPAVRAAGGGGGGGG----GGGGGGGGGGVGGGGAGGGAGGGRS 92
AK + G +P GGGGGG G G G GG GG GGA +
Sbjct: 187 AKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAA 246
Query: 93 PVRELDMGAA 102
AA
Sbjct: 247 AAAAAAAAAA 256
Score = 31.2 bits (69), Expect = 1.3
Identities = 28/101 (27%), Positives = 31/101 (30%), Gaps = 17/101 (16%)
Query: 10 KSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAGGGGGGGGGG 69
KS + E KEA + GP C G A G G GG GG
Sbjct: 175 KSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGG 234
Query: 70 GGGGGG-----------------GGVGGGGAGGGAGGGRSP 93
G GG GG A GG G G +P
Sbjct: 235 EPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAP 275
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 92.0 bits (227), Expect = 6e-19
Identities = 88/274 (32%), Positives = 121/274 (44%), Gaps = 49/274 (17%)
Query: 98 DMGAAERSREPGSPR------LTEVS----PELKDRKEDAKGMEDEGQ------------ 135
DMG A P PR +E S PE K+R + KG ED G
Sbjct: 26 DMGPAFHLARPADPREPLENSASESSDTELPE-KERGGEPKGPEDSGAGGTGCGGADDPA 84
Query: 136 TKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKC 195
K KQRR RT+FT +QL ELE F YPD MREE++ L+E RV+VWF+NRRAK
Sbjct: 85 KKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKW 144
Query: 196 RKQEN----QLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQAQL 251
RK+E L KG G QF V PY +V A + + ++ P ++
Sbjct: 145 RKRERNQQLDLCKG---GYVPQFSGL-VQPYEDVYAAGYSYNNWAAKSLAPAPLSTKSFT 200
Query: 252 QLDSAVAHAHHHLHPHLAAHA----PYMMFPAPPFGLP------LATLAADSASAASVVA 301
+S + + ++ + P M P G+P + L S ++A
Sbjct: 201 FFNSMSPLSSQSMFSAPSSISSMTMPSSMGPGAVPGMPNSGLNNINNLTGSSLNSAMSPG 260
Query: 302 AAAAAKTTSK--------NSSIADLRLKAKKHAA 327
A S NSS+A LRLK+K+H++
Sbjct: 261 ACPYGTPASPYSVYRDTCNSSLASLRLKSKQHSS 294
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 90.1 bits (222), Expect = 2e-18
Identities = 47/101 (46%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 133 EGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRR 192
E K K RR+RT FT QL++LER F+ +HYPD + REEL+ ++ L E RVQVWFQNRR
Sbjct: 20 EEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRR 79
Query: 193 AKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQ 233
AK R+QE +L G AA + P+ A+ +P +
Sbjct: 80 AKWRRQE-RLESGSGAVAAPRLPEAPALPFARPPAMSLPLE 119
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,665,011
Number of Sequences: 37866
Number of extensions: 803346
Number of successful extensions: 41451
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 297
Number of HSP's that attempted gapping in prelim test: 11077
Number of HSP's gapped (non-prelim): 11176
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.