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Search of human proteins with 88943446
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|88943446 PREDICTED: similar to Kinase suppressor of Ras 1
[Homo sapiens]
(76 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|88943446 PREDICTED: similar to Kinase suppressor of Ras 1 [Ho... 157 2e-39
gi|169217819 PREDICTED: similar to hCG1793095 [Homo sapiens] 73 4e-14
gi|167621456 kinase suppressor of ras 2 [Homo sapiens] 40 3e-04
gi|194018478 TBC1 domain family, member 2B isoform a [Homo sapiens] 31 0.19
gi|194018476 TBC1 domain family, member 2B isoform b [Homo sapiens] 31 0.19
gi|46430491 scratch 2 protein [Homo sapiens] 30 0.32
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 30 0.42
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 30 0.42
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens] 29 0.72
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|24497506 forkhead box A3 [Homo sapiens] 28 1.2
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 28 2.1
gi|116734702 homeobox D13 [Homo sapiens] 28 2.1
gi|52353288 olfactory receptor, family 8, subfamily D, member 4 ... 28 2.1
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 27 2.7
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 27 2.7
gi|42558258 F-box protein 33 [Homo sapiens] 27 2.7
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 27 2.7
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 27 2.7
gi|29570782 additional sex combs like 1 [Homo sapiens] 27 3.5
gi|7705773 SH3-containing protein SH3GLB1 [Homo sapiens] 27 3.5
gi|50897282 olfactory receptor, family 8, subfamily D, member 1 ... 27 3.5
gi|153791670 keratin 76 [Homo sapiens] 27 4.6
gi|24308237 phosphatidylinositol transfer protein, membrane-asso... 27 4.6
gi|4507161 SRY-box 11 [Homo sapiens] 27 4.6
gi|4758630 potassium voltage-gated channel KQT-like protein 3 [H... 27 4.6
gi|33286428 solute carrier family 7 (cationic amino acid transpo... 27 4.6
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 27 4.6
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 27 4.6
>gi|88943446 PREDICTED: similar to Kinase suppressor of Ras 1
[Homo sapiens]
Length = 76
Score = 157 bits (396), Expect = 2e-39
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MGEKKEGGGGGDAAATEGGTGAAASRALQQCGQLQKLIVIFIGSLCGLCTKCAVSNDLTQ 60
MGEKKEGGGGGDAAATEGGTGAAASRALQQCGQLQKLIVIFIGSLCGLCTKCAVSNDLTQ
Sbjct: 1 MGEKKEGGGGGDAAATEGGTGAAASRALQQCGQLQKLIVIFIGSLCGLCTKCAVSNDLTQ 60
Query: 61 QEIQTLEILFNIPHHG 76
QEIQTLEILFNIPHHG
Sbjct: 61 QEIQTLEILFNIPHHG 76
>gi|169217819 PREDICTED: similar to hCG1793095 [Homo sapiens]
Length = 167
Score = 73.2 bits (178), Expect = 4e-14
Identities = 41/58 (70%), Positives = 44/58 (75%), Gaps = 4/58 (6%)
Query: 11 GDAAATEGGTGAAASRALQQCGQLQKLIVIFIGSLCGLCTKCAVSNDLTQQEIQTLEI 68
G+ G GAAASRALQQCGQLQ LI GSL GL TKCAVSNDLTQQEI+TLE+
Sbjct: 85 GEYCPRMGPGGAAASRALQQCGQLQNLI----GSLRGLRTKCAVSNDLTQQEIRTLEV 138
>gi|167621456 kinase suppressor of ras 2 [Homo sapiens]
Length = 921
Score = 40.4 bits (93), Expect = 3e-04
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 37 LIVIFIGSLCGLCTKCAVSNDLTQQEIQTLE 67
+I + I +L GL TKCA SNDLTQ+EI+TLE
Sbjct: 1 MIDLSISNLEGLRTKCATSNDLTQKEIRTLE 31
>gi|194018478 TBC1 domain family, member 2B isoform a [Homo
sapiens]
Length = 963
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 5 KEGGGGGD----AAATEGGTGAAASRALQQCGQLQKL 37
+EGGGGG+ AA E G G A A + CG LQKL
Sbjct: 9 EEGGGGGEGAAQGAAAEPGAGPAREPA-RLCGYLQKL 44
>gi|194018476 TBC1 domain family, member 2B isoform b [Homo
sapiens]
Length = 914
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 5 KEGGGGGD----AAATEGGTGAAASRALQQCGQLQKL 37
+EGGGGG+ AA E G G A A + CG LQKL
Sbjct: 9 EEGGGGGEGAAQGAAAEPGAGPAREPA-RLCGYLQKL 44
>gi|46430491 scratch 2 protein [Homo sapiens]
Length = 307
Score = 30.4 bits (67), Expect = 0.32
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 4 KKEGGGGGDAAAT--EGGTGAAASRALQQCG 32
++ GGGGGDA + GG G A RA Q G
Sbjct: 120 RRRGGGGGDAGGSGDAGGAGGRAGRAGAQAG 150
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 7 GGGGGDAAATEGGTGAAASRALQQCGQLQKL 37
GGGGG GG G +AS +L G L+ L
Sbjct: 750 GGGGGGGGGGAGGGGPSASNSLLYTGDLEAL 780
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 7 GGGGGDAAATEGGTGAAASRALQQCGQLQKL 37
GGGGG GG G +AS +L G L+ L
Sbjct: 731 GGGGGGGGGGAGGGGPSASNSLLYTGDLEAL 761
>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 29.3 bits (64), Expect = 0.72
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 1 MGEKKEGGGGGDAAATEGGTGAA 23
+ K GGGGG A EGG G A
Sbjct: 15 LNNHKGGGGGGGAGGAEGGAGGA 37
>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 28.9 bits (63), Expect = 0.93
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 5 KEGGGGGDAAATEGGTGAA 23
K GGGGG A EGG G A
Sbjct: 50 KGGGGGGGAGGAEGGAGGA 68
>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 28.9 bits (63), Expect = 0.93
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 5 KEGGGGGDAAATEGGTGAA 23
K GGGGG A EGG G A
Sbjct: 50 KGGGGGGGAGGAEGGAGGA 68
>gi|24497506 forkhead box A3 [Homo sapiens]
Length = 350
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 3 EKKEGGGGGDAAATEGGTGAAAS 25
EK + GG G A T GTG+AAS
Sbjct: 217 EKVKKGGSGAATTTRNGTGSAAS 239
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 8 GGGGDAAATEGGTGAAA 24
GGGG A+T GG GA A
Sbjct: 244 GGGGSTASTSGGVGAGA 260
>gi|116734702 homeobox D13 [Homo sapiens]
Length = 343
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 2 GEKKEGGGGGDAAATEGGTGAAASRALQQC 31
G + +GGG G A A+ + AA+ A QC
Sbjct: 11 GLRADGGGAGGAPASSSSSSVAAAAASGQC 40
>gi|52353288 olfactory receptor, family 8, subfamily D, member 4
[Homo sapiens]
Length = 314
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 26 RALQQCGQLQKLIVIFIGSLCGLCTKCAVSNDLTQQEIQTL 66
+A C +++F GSL + K A S+ LTQ+++ ++
Sbjct: 236 KAFSTCSSHLTAVLMFYGSLMSMYLKPASSSSLTQEKVSSV 276
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 2 GEKKEGGGG-GDAAATEGGTGAAASRA 27
GE + GGGG G A T G G AA A
Sbjct: 8 GEAESGGGGSGSAPVTAGAAGPAAQEA 34
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 2 GEKKEGGGG-GDAAATEGGTGAAASRA 27
GE + GGGG G A T G G AA A
Sbjct: 8 GEAESGGGGSGSAPVTAGAAGPAAQEA 34
>gi|42558258 F-box protein 33 [Homo sapiens]
Length = 555
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 7 GGGGGDAAATEGGTGAAASRALQQCGQLQKLIVIFIGSLCGLCTKCAVSNDLTQQE 62
GGG GD + GTG ALQ + +++ ++ + LC ++ N+ Q+
Sbjct: 151 GGGPGDGGGADTGTGGEEVEALQLSARWLEVLRTYLELV--LCVLVSIRNNRNLQK 204
>gi|21264565 AT rich interactive domain 1A isoform a [Homo
sapiens]
Length = 2285
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 2 GEKKEGGGGGDAAATEGGTGA 22
G + GGGGG A + GG GA
Sbjct: 76 GAESNGGGGGGGAGSGGGPGA 96
>gi|21264575 AT rich interactive domain 1A isoform b [Homo
sapiens]
Length = 2068
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 2 GEKKEGGGGGDAAATEGGTGA 22
G + GGGGG A + GG GA
Sbjct: 76 GAESNGGGGGGGAGSGGGPGA 96
>gi|29570782 additional sex combs like 1 [Homo sapiens]
Length = 1541
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 7 GGGGGDAAATEGGTGAAASRALQQCG 32
GGGGG A GG G+++ + CG
Sbjct: 648 GGGGGGATDEGGGRGSSSGDGGEACG 673
>gi|7705773 SH3-containing protein SH3GLB1 [Homo sapiens]
Length = 365
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 14 AATEGGTGAAASRALQQCGQLQKLI 38
A TE G G A AL +CG+ QK I
Sbjct: 104 AGTEFGPGTAYGNALIKCGETQKRI 128
>gi|50897282 olfactory receptor, family 8, subfamily D, member 1
[Homo sapiens]
Length = 308
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 25 SRALQQCGQLQKLIVIFIGSLCGLCTKCAVSNDLTQQEIQTLEILFNIP 73
S+A C +VIF GS+ + K SN L Q+++ ++ IP
Sbjct: 235 SKAFGTCSSHLMAVVIFFGSITFMYFKPPSSNSLDQEKVSSVFYTTVIP 283
>gi|153791670 keratin 76 [Homo sapiens]
Length = 638
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 5 KEGGGGGDAAATEGGTGAAASRALQQCGQLQKLIV 39
+ GG GG A G G+ SR+L G + + +
Sbjct: 35 RSGGAGGGACGFRSGAGSFGSRSLYNLGSNKSISI 69
>gi|24308237 phosphatidylinositol transfer protein,
membrane-associated 2 [Homo sapiens]
Length = 1349
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 7 GGGGGDAAATEGGTGAAASRALQQCGQLQK 36
GGGGG + GG G++ +L+ L +
Sbjct: 614 GGGGGGGGGSSGGGGSSGGSSLESSRHLSR 643
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 3 EKKEGGGGGDAAATEGGTGAAASRALQQCGQLQ 35
EK GGGG +A G + + ++CG+L+
Sbjct: 139 EKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLK 171
>gi|4758630 potassium voltage-gated channel KQT-like protein 3
[Homo sapiens]
Length = 872
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 7 GGGGGDAAATEGGTGAAASRALQQCG 32
GGGGG AA GG AAA ++ G
Sbjct: 19 GGGGGGAANPAGGDAAAAGDEERKVG 44
>gi|33286428 solute carrier family 7 (cationic amino acid
transporter, y+ system), member 8 isoform a [Homo
sapiens]
Length = 535
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 3 EKKEGGGGGDAAATEGGTGAAASRALQQCGQLQKLIVIFIGSLCG 47
EKK GGG A+ E G+G ++ G L I +G++ G
Sbjct: 12 EKKHPGGGESDASPEAGSGGGGVALKKEIG-LVSACGIIVGNIIG 55
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 7 GGGGGDAAATEGGTGAAASRA 27
GGGGG A GG GA A A
Sbjct: 263 GGGGGGGGAGAGGAGAGAVAA 283
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 7 GGGGGDAAATEGGTGAAASRA 27
GGGGG A A G GA A+ A
Sbjct: 265 GGGGGGAGAGGAGAGAVAAAA 285
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 7 GGGGGDAAATEGGTGAAASRA 27
GGGGG A GG GA A A
Sbjct: 263 GGGGGGGGAGAGGAGAGAVAA 283
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 7 GGGGGDAAATEGGTGAAASRA 27
GGGGG A A G GA A+ A
Sbjct: 265 GGGGGGAGAGGAGAGAVAAAA 285
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,061,052
Number of Sequences: 37866
Number of extensions: 110536
Number of successful extensions: 1434
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 133
length of query: 76
length of database: 18,247,518
effective HSP length: 48
effective length of query: 28
effective length of database: 16,429,950
effective search space: 460038600
effective search space used: 460038600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.