Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 88942880
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|88942880 PREDICTED: hypothetical protein [Homo sapiens]
(120 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|88942880 PREDICTED: hypothetical protein [Homo sapiens] 242 5e-65
gi|169160869 PREDICTED: hypothetical protein [Homo sapiens] 239 3e-64
gi|88950401 PREDICTED: hypothetical protein [Homo sapiens] 239 3e-64
gi|188536004 zinc finger protein 469 [Homo sapiens] 38 0.002
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 35 0.013
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 35 0.013
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 35 0.013
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 35 0.013
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 35 0.013
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 35 0.013
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 33 0.038
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 33 0.038
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 33 0.038
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.085
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 32 0.085
gi|18079216 CASK interacting protein 1 [Homo sapiens] 32 0.11
gi|239754514 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|10863889 squamous cell carcinoma antigen recognized by T cell... 32 0.11
gi|5174419 caseinolytic peptidase, ATP-dependent, proteolytic su... 31 0.19
gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens] 31 0.25
gi|5730045 solute carrier family 16, member 2 [Homo sapiens] 31 0.25
gi|115334682 SNAP25-interacting protein [Homo sapiens] 31 0.25
gi|28559039 mediator complex subunit 1 [Homo sapiens] 30 0.42
gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens] 30 0.42
gi|39725942 twinkle [Homo sapiens] 30 0.55
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 30 0.55
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 30 0.55
gi|119220598 apolipoprotein B48 receptor [Homo sapiens] 30 0.55
gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens] 29 0.72
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain... 29 0.72
>gi|88942880 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 242 bits (617), Expect = 5e-65
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALS 60
MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALS
Sbjct: 1 MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALS 60
Query: 61 LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV 120
LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV
Sbjct: 61 LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV 120
>gi|169160869 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 239 bits (610), Expect = 3e-64
Identities = 119/120 (99%), Positives = 119/120 (99%)
Query: 1 MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALS 60
MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEAR LAEPALS
Sbjct: 1 MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALS 60
Query: 61 LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV 120
LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV
Sbjct: 61 LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV 120
>gi|88950401 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 239 bits (610), Expect = 3e-64
Identities = 119/120 (99%), Positives = 119/120 (99%)
Query: 1 MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALS 60
MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEAR LAEPALS
Sbjct: 1 MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALS 60
Query: 61 LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV 120
LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV
Sbjct: 61 LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV 120
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 38.1 bits (87), Expect = 0.002
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 25/119 (21%)
Query: 10 GASGPASEVDGDANLRDATRSSEQRSFPLVE----------------AQAQAPPHGEARR 53
GA G A + G A RSS+ S L AQ Q PHG
Sbjct: 519 GALGTAGKTPGPREKLPAVRSSQGGSPALFTYNGMTDPGAQPLFFGVAQPQVSPHGT--- 575
Query: 54 LAEPALSLRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRP 112
P+L + + ASP P+P+P + +G + S L P + + EE+ +P P
Sbjct: 576 ---PSLPPPRVVGASPSESPLPSPATNTAGSTCSS---LSPMSSSPANPSSEESQLPGP 628
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 35.0 bits (79), Expect = 0.013
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 10 GASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALSLRQPIDASP 69
G +GPA + ++SS + S EA AQA P G+A ++ + P SP
Sbjct: 315 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVR----AASAPAKESP 370
Query: 70 RADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
R PAP R +A + RSS E +
Sbjct: 371 RKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESD 406
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 35.0 bits (79), Expect = 0.013
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 10 GASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALSLRQPIDASP 69
G +GPA + ++SS + S EA AQA P G+A ++ + P SP
Sbjct: 392 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVR----AASAPAKESP 447
Query: 70 RADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
R PAP R +A + RSS E +
Sbjct: 448 RKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESD 483
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 35.0 bits (79), Expect = 0.013
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 10 GASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALSLRQPIDASP 69
G +GPA + ++SS + S EA AQA P G+A ++ + P SP
Sbjct: 392 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVR----AASAPAKESP 447
Query: 70 RADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
R PAP R +A + RSS E +
Sbjct: 448 RKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESD 483
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 35.0 bits (79), Expect = 0.013
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 10 GASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALSLRQPIDASP 69
G +GPA + ++SS + S EA AQA P G+A ++ + P SP
Sbjct: 315 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVR----AASAPAKESP 370
Query: 70 RADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
R PAP R +A + RSS E +
Sbjct: 371 RKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESD 406
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 35.0 bits (79), Expect = 0.013
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 10 GASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALSLRQPIDASP 69
G +GPA + ++SS + S EA AQA P G+A ++ + P SP
Sbjct: 392 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVR----AASAPAKESP 447
Query: 70 RADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
R PAP R +A + RSS E +
Sbjct: 448 RKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESD 483
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 35.0 bits (79), Expect = 0.013
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 10 GASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALSLRQPIDASP 69
G +GPA + ++SS + S EA AQA P G+A ++ + P SP
Sbjct: 392 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVR----AASAPAKESP 447
Query: 70 RADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
R PAP R +A + RSS E +
Sbjct: 448 RKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESD 483
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 33.5 bits (75), Expect = 0.038
Identities = 19/47 (40%), Positives = 21/47 (44%)
Query: 37 PLVEAQAQAPPHGEARRLAEPALSLRQPIDASPRADPVPAPDRSLSG 83
PL QAPP A L P P +PR P P PD S+SG
Sbjct: 554 PLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSG 600
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 33.5 bits (75), Expect = 0.038
Identities = 19/47 (40%), Positives = 21/47 (44%)
Query: 37 PLVEAQAQAPPHGEARRLAEPALSLRQPIDASPRADPVPAPDRSLSG 83
PL QAPP A L P P +PR P P PD S+SG
Sbjct: 823 PLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSG 869
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 33.5 bits (75), Expect = 0.038
Identities = 19/47 (40%), Positives = 21/47 (44%)
Query: 37 PLVEAQAQAPPHGEARRLAEPALSLRQPIDASPRADPVPAPDRSLSG 83
PL QAPP A L P P +PR P P PD S+SG
Sbjct: 515 PLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSG 561
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.3 bits (72), Expect = 0.085
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 1/113 (0%)
Query: 3 KKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALSLR 62
KK R S S S A R + R S S P + ++Q PP ++P R
Sbjct: 750 KKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSR 809
Query: 63 QPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFN 115
P S R+ P P + S S P + SG + +I P N
Sbjct: 810 TPPRRS-RSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQAN 861
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 32.3 bits (72), Expect = 0.085
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 4 KERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALSLRQ 63
+ RRRS AS S ++ SS RS P + + P + RRL+ A R+
Sbjct: 346 RRRRRSSASLSGSS--------SSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRR 397
Query: 64 PIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETT 108
SP A P P S + S R K R+ S G T + T
Sbjct: 398 RHRPSPPATPPPKTRHSPT--PQQSNRTRKSRVSVSPGRTSGKVT 440
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 14 PASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALS----LRQPI---- 65
PASE G L +E L PP GEAR+ A+P +S L QP+
Sbjct: 1181 PASEQAGPPELPPPPPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPVPKLQ 1240
Query: 66 -DASPRADPVPAP 77
+P + VP P
Sbjct: 1241 GSPTPTSKKVPLP 1253
Score = 26.2 bits (56), Expect = 6.1
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 9 SGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALSLRQPIDAS 68
SG++GP S A A + + P + A PP A L PA R A+
Sbjct: 1292 SGSAGP-SPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAA 1350
Query: 69 PRADPVPAPDRSLSGGSA 86
A PAP S G +
Sbjct: 1351 AAAAAPPAPPEGASPGDS 1368
>gi|239754514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 64 PIDASPRADPVPAPDRSLSGGSAHSGRFLKPR------LRRSSGETDEE 106
P SPR P P+PD S GGSA PR L R G T+ E
Sbjct: 11 PRSTSPRLQPPPSPDSSSRGGSARRRAAPAPRCPQRLGLLRPPGPTNSE 59
>gi|10863889 squamous cell carcinoma antigen recognized by T cells
1 [Homo sapiens]
Length = 800
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 3 KKERRRSGASGPASEVDGDANLRDATRSSEQRSFPL-VEAQAQAPPHGEARRLAEPA 58
KK + RSG SG + G+ R R E+ S EA+A++ HG R AEP+
Sbjct: 36 KKHKHRSGGSGGSG---GERRKRSRERGGERGSGRRGAEAEARSSTHGRERSQAEPS 89
>gi|5174419 caseinolytic peptidase, ATP-dependent, proteolytic
subunit precursor [Homo sapiens]
Length = 277
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 32 EQRSFPLVEAQAQAPPH-GEARRLAEPALSLRQPIDASPRADPVPA 76
E + F +++ PP GE EP L ++P++A+P A+PVPA
Sbjct: 234 EAQEFGILDKVLVHPPQDGED----EPTLVQKEPVEAAPAAEPVPA 275
>gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]
Length = 1316
Score = 30.8 bits (68), Expect = 0.25
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 25 RDATRSSEQRSFPLVEAQAQAP-----PHGEARRLAEPALSLRQPIDASPRAD-PVPAPD 78
RDA S+ P + AP P G AEP+ R A+P+A P PA +
Sbjct: 881 RDAQDPSQSLGAPEAAERPPAPVLDMAPAGHPEGDAEPSPGERVEDAAAPKAPGPSPAKE 940
Query: 79 RSLSGGSAHSGRFLKPRLRRSSGETDEET 107
+ S G + R R SSGE E+
Sbjct: 941 KIGSLRKVDRGHYRSRRERSSSGEPARES 969
>gi|5730045 solute carrier family 16, member 2 [Homo sapiens]
Length = 613
Score = 30.8 bits (68), Expect = 0.25
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 4 KERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEA-QAQAPPHGEARRLAEPALSLR 62
K + +SG+SGP+S A + +++SE+ P EA Q Q P G +EP
Sbjct: 56 KYQPQSGSSGPSSH-SPPAAMALQSQASEEAKGPWQEADQEQQEPVGSPEPESEP----- 109
Query: 63 QPIDASPRADPVPAP 77
+ P +PVP P
Sbjct: 110 ---EPEPEPEPVPVP 121
>gi|115334682 SNAP25-interacting protein [Homo sapiens]
Length = 1183
Score = 30.8 bits (68), Expect = 0.25
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 18 VDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPA----LSLRQPIDASPRADP 73
VD ++ A R E++ L + A+ + RL E L +D + +A P
Sbjct: 902 VDKAVSVEAAERDWEEKRAALTQYSAK-----DINRLLEETQAELLKAIPDLDCASKAHP 956
Query: 74 VPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPR 111
PAP A G+ PR S +E T+PR
Sbjct: 957 GPAPTPDHKPPKAPHGQKAAPRTEPSGRRGSDELTVPR 994
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 30.0 bits (66), Expect = 0.42
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 2 GKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALSL 61
G + G S +S + ++ + S P + PP G + +LA P
Sbjct: 1154 GSSPITKHGLSSGSSSTKMKPQGKPSSLMNPSLSKPNISPSHSRPPGG-SDKLASPM--- 1209
Query: 62 RQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSG 101
+P+ +P + +P S SGGS SG ++ SSG
Sbjct: 1210 -KPVPGTPPSSKAKSPISSGSGGSHMSGTSSSSGMKSSSG 1248
>gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens]
Length = 503
Score = 30.0 bits (66), Expect = 0.42
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 16/59 (27%)
Query: 20 GDANLRDATRSSEQRSFPLVEAQAQAPPHGEAR-----RLAEPALSLRQPIDASPRADP 73
G+A LRD R E+ A P GE R RL E A +P ASPRA+P
Sbjct: 40 GEARLRDEERLREE-----------ARPRGEERLREEARLREDAPLRARPAAASPRAEP 87
>gi|39725942 twinkle [Homo sapiens]
Length = 684
Score = 29.6 bits (65), Expect = 0.55
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 34 RSFPLVEAQAQAPPHGEARRLAEPALSLRQPIDASPRADPVP--APDRSL------SGGS 85
R+ PL E P E +LA+ L + D + + V P RSL GGS
Sbjct: 160 RAIPLWEL-----PDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPARSLVFPWFSPGGS 214
Query: 86 AHSGRFLKPRLRRSSGETDEETTIPRP--YFNYYG 118
G L + G + EETTIPRP Y N +G
Sbjct: 215 GLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFG 249
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 29.6 bits (65), Expect = 0.55
Identities = 20/49 (40%), Positives = 22/49 (44%)
Query: 5 ERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARR 53
ER G SG A GD R A+RSS + Q QA HG A R
Sbjct: 466 ERAGHGFSGDAEARSGDLGARPASRSSLPSAPAPPAQQPQAARHGAAGR 514
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 47 PHGEARRLAEPALSLRQPIDASPRADPVPAP-----DRSLSGGSAHSGRFLKPRLRRS-S 100
P AR ++P LS P A P P P P R+ G S +P+ RRS S
Sbjct: 108 PQPRARSRSQPGLSAPPPPPARPPPPPPPPPPPAPRPRAWRGSRRRSRPGSRPQTRRSCS 167
Query: 101 GETD 104
G+ D
Sbjct: 168 GDLD 171
>gi|119220598 apolipoprotein B48 receptor [Homo sapiens]
Length = 1088
Score = 29.6 bits (65), Expect = 0.55
Identities = 38/118 (32%), Positives = 48/118 (40%), Gaps = 27/118 (22%)
Query: 8 RSGASGPASEVDGDANLRDAT----------RSSEQRSFPLV----------EAQAQAPP 47
R GA+ SE +L D + SS++RS P E A PP
Sbjct: 967 RGGAANSWSEAPLPGSLLDVSVPRSRVHLSRSSSQRRSRPSFRRTPAWEQQEEPPAPNPP 1026
Query: 48 HGEARRLAEPALSLRQPIDASP-RAD--PVPAPDRSLSG--GSAHSGRF--LKPRLRR 98
E + L L +P++ SP R D PVPA R L G AH G L+ RL R
Sbjct: 1027 EEELSAPEQRPLQLEEPLEPSPLRHDGTPVPARRRPLGHGFGLAHPGMMQELQARLGR 1084
>gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens]
Length = 735
Score = 29.3 bits (64), Expect = 0.72
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 9 SGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALSLRQPIDAS 68
+G P+ E DGD DA SS AP AR + P +P
Sbjct: 105 AGTPSPSGEADGDCAPEDAAPSS-----------GGAPRQDAAREV--PGSEAARPEQEP 151
Query: 69 PRADPVPAPDRSLSGGSAHSGRFLKPRLRRS 99
P A+PVP SG +P++ +S
Sbjct: 152 PVAEPVPVCTIFSQRAPPASGDGFEPQMVKS 182
>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
proline-rich containing [Homo sapiens]
Length = 1435
Score = 29.3 bits (64), Expect = 0.72
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 13 GPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALSLRQPIDASP 69
GP +E D LR S+ +R+ + E Q QAP R P L R ++A P
Sbjct: 1341 GPRNE---DGQLRPRPLSAGRRAVSVHEDQLQAPAERPLRLQRSPVLKRRPKLEAPP 1394
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.129 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,478,078
Number of Sequences: 37866
Number of extensions: 269952
Number of successful extensions: 1202
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 193
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.