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Search of human proteins with 87252717
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|87252717 hypothetical protein LOC284618 [Homo sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|87252717 hypothetical protein LOC284618 [Homo sapiens] 503 e-143
gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo ... 43 2e-04
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 42 4e-04
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 42 5e-04
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 42 5e-04
gi|188536004 zinc finger protein 469 [Homo sapiens] 41 8e-04
gi|91208420 bassoon protein [Homo sapiens] 40 0.002
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 40 0.002
gi|239747673 PREDICTED: doublecortin domain-containing protein E... 39 0.005
gi|239741542 PREDICTED: doublecortin domain-containing protein E... 39 0.005
gi|18426913 drebrin 1 isoform b [Homo sapiens] 38 0.007
gi|18426915 drebrin 1 isoform a [Homo sapiens] 38 0.007
gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precurs... 38 0.007
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 38 0.007
gi|223972612 Crm, cramped-like [Homo sapiens] 37 0.011
gi|239752133 PREDICTED: hypothetical protein [Homo sapiens] 37 0.011
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens] 37 0.011
gi|163965366 nascent polypeptide-associated complex alpha subuni... 37 0.011
gi|110832843 TBP-associated factor 4 [Homo sapiens] 37 0.019
gi|189027090 cytoplasmic polyadenylation element binding protein... 37 0.019
gi|239756888 PREDICTED: hypothetical protein [Homo sapiens] 36 0.025
gi|18079216 CASK interacting protein 1 [Homo sapiens] 35 0.043
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 35 0.043
gi|54873613 agrin [Homo sapiens] 35 0.056
gi|30840978 neuroligin 2 [Homo sapiens] 35 0.056
gi|112421108 capicua homolog [Homo sapiens] 35 0.056
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 35 0.073
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 35 0.073
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 35 0.073
>gi|87252717 hypothetical protein LOC284618 [Homo sapiens]
Length = 236
Score = 503 bits (1295), Expect = e-143
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MEPGGSENAAALWISEGGRGPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDA 60
MEPGGSENAAALWISEGGRGPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDA
Sbjct: 1 MEPGGSENAAALWISEGGRGPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDA 60
Query: 61 LKGGGGWGWGNTQSLSGECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVC 120
LKGGGGWGWGNTQSLSGECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVC
Sbjct: 61 LKGGGGWGWGNTQSLSGECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVC 120
Query: 121 PFSPHSSPSFSHHRTLSLFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPR 180
PFSPHSSPSFSHHRTLSLFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPR
Sbjct: 121 PFSPHSSPSFSHHRTLSLFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPR 180
Query: 181 LPRSPPGGAQSGRGGALAQPTLRCAAAPLRAWAWRSSDPPPAFSVFCHPPRGFDIS 236
LPRSPPGGAQSGRGGALAQPTLRCAAAPLRAWAWRSSDPPPAFSVFCHPPRGFDIS
Sbjct: 181 LPRSPPGGAQSGRGGALAQPTLRCAAAPLRAWAWRSSDPPPAFSVFCHPPRGFDIS 236
>gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo
sapiens]
Length = 761
Score = 43.1 bits (100), Expect = 2e-04
Identities = 44/128 (34%), Positives = 47/128 (36%), Gaps = 8/128 (6%)
Query: 98 TPHLLAASAGLQPAPSPLGTAVCP--FSPHSSPSFSHHRTLSLFISPAPLSCPAPRAQVH 155
T H A PSPL P F PH S SF+ R LF + A S P PR H
Sbjct: 80 TSHSSKAKLCRPSTPSPLFCPASPQLFDPHHSGSFALRRRGFLFSAAAAFS-PPPRLFPH 138
Query: 156 RS---TPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGGALAQPTLRCAAAPLRAW 212
R P L LL P R P P PP R G L P A P R +
Sbjct: 139 RGFLPPPAASGLCPPRLLIPYRRGFLP--PTPPPPQRLFARPGFLPTPAAATAFCPPRLF 196
Query: 213 AWRSSDPP 220
A PP
Sbjct: 197 ARPGFLPP 204
Score = 28.1 bits (61), Expect = 6.9
Identities = 32/96 (33%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 139 FISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEP-LRPWACPRLPRSPPGGAQSGRGGAL 197
F PA S P PR A L R L P R + PRL PP A + L
Sbjct: 334 FFRPAAFSPPPPRLF---------APLPRRLFHPHCRGFLSPRL--FPPPAAAAFCPPRL 382
Query: 198 AQPTLRCAAAPLRAW---AWRSSDPPPAFSVFCHPP 230
P R P R +R PPA FC PP
Sbjct: 383 FHPRRRGFLPPRRRGFLLPYRGGFLPPAVVAFCPPP 418
Score = 27.7 bits (60), Expect = 9.0
Identities = 44/150 (29%), Positives = 49/150 (32%), Gaps = 46/150 (30%)
Query: 99 PHLLAASAGLQPAPSPLGTAVCPFSPHSSPSF--SHHR---TLSLFISPAPLSCPAPRAQ 153
P L A G P P+ TA CP + P F H R L+ F P P PR
Sbjct: 171 PQRLFARPGFLPTPAA-ATAFCPPRLFARPGFLPPHRRGFLPLTAFYPPPP-----PR-- 222
Query: 154 VHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGGALAQPTLRCAAAPLRAWA 213
L P PW R PP A + A PT AAA
Sbjct: 223 ----------LFVAAAFSPPPPWLSARRGFLPPAAAAAA--AAFCSPT---AAA------ 261
Query: 214 WRSSDPPP---AFSVFCH-------PPRGF 233
S PPP + FC PPR F
Sbjct: 262 --FSPPPPWLFVAATFCSTRLFAPPPPRLF 289
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 42.4 bits (98), Expect = 4e-04
Identities = 66/206 (32%), Positives = 77/206 (37%), Gaps = 41/206 (19%)
Query: 23 RGPGPEWTSRSLLPQS---GPALQPTPYSQRKG---PRETHPDALKGGGGWGWGNTQSLS 76
RG G R P S G PTP R G PR + P A GGG G G TQ +
Sbjct: 260 RGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLV- 318
Query: 77 GECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLG-----------TAVCPFSPH 125
G G G G S+ T H LA G + AP P+G ++ P SP
Sbjct: 319 -----GSGRG---SGVTHSVGT-HALATRRGSR-APRPVGVLRGVPHFRPLSSPAPQSPP 368
Query: 126 SSPSFSHHRTLSLFISPAPLSCP-APRAQVHRSTPMGRALLTRVLLEPLRPWACPRLPRS 184
SPS R + LSCP APRA + G A+L P W R
Sbjct: 369 RSPSV---RAFGPRLGAGRLSCPQAPRA----AALPGIAVLAP---SPAHDWGGQRCEGC 418
Query: 185 PPGGAQSGRGGALAQPTLRCAAAPLR 210
GG G A+ R A P R
Sbjct: 419 --GGGSQPFAGRRAERGKRGAGVPWR 442
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 42.0 bits (97), Expect = 5e-04
Identities = 61/188 (32%), Positives = 72/188 (38%), Gaps = 38/188 (20%)
Query: 38 SGPALQPTPYSQRKG---PRETHPDALKGGGGWGWGNTQSLSGECRKGVGAGEEKDGAAV 94
SG PTP R G PR + P A GGG G G TQ + G G G G
Sbjct: 376 SGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLV------GSGRG---SGVTH 426
Query: 95 SLSTPHLLAASAGLQPAPSPLG-----------TAVCPFSPHSSPSFSHHRTLSLFISPA 143
S+ T H LA G + AP P+G ++ P SP SPS R +
Sbjct: 427 SVGT-HALATRRGSR-APRPVGVLRGVPHFRPLSSPAPQSPPRSPSV---RAFGPRLGAG 481
Query: 144 PLSCP-APRAQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGGALAQPTL 202
LSCP APRA + G A+L P W R GG G A+
Sbjct: 482 RLSCPQAPRA----AALPGIAVLAP---SPAHDWGGQRCEGC--GGGSQPFAGRRAERGK 532
Query: 203 RCAAAPLR 210
R A P R
Sbjct: 533 RGAGVPWR 540
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 42.0 bits (97), Expect = 5e-04
Identities = 61/188 (32%), Positives = 72/188 (38%), Gaps = 38/188 (20%)
Query: 38 SGPALQPTPYSQRKG---PRETHPDALKGGGGWGWGNTQSLSGECRKGVGAGEEKDGAAV 94
SG PTP R G PR + P A GGG G G TQ + G G G G
Sbjct: 376 SGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLV------GSGRG---SGVTH 426
Query: 95 SLSTPHLLAASAGLQPAPSPLG-----------TAVCPFSPHSSPSFSHHRTLSLFISPA 143
S+ T H LA G + AP P+G ++ P SP SPS R +
Sbjct: 427 SVGT-HALATRRGSR-APRPVGVLRGVPHFRPLSSPAPQSPPRSPSV---RAFGPRLGAG 481
Query: 144 PLSCP-APRAQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGGALAQPTL 202
LSCP APRA + G A+L P W R GG G A+
Sbjct: 482 RLSCPQAPRA----AALPGIAVLAP---SPAHDWGGQRCEGC--GGGSQPFAGRRAERGK 532
Query: 203 RCAAAPLR 210
R A P R
Sbjct: 533 RGAGVPWR 540
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 41.2 bits (95), Expect = 8e-04
Identities = 42/150 (28%), Positives = 55/150 (36%), Gaps = 7/150 (4%)
Query: 3 PGGSENAAALWISEGGRGPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDALK 62
PGG A G PG+ ++ PQ P +P+P+ R P
Sbjct: 452 PGGPLAATRSMFFNGQPSPGQRLCLPQSAPLPWPQVLPTARPSPHGMEMLSRLPFP---A 508
Query: 63 GGGGWGWGNTQSLSGECRKGVGAGEEKDGAAVSLS-TPHLLAASAGLQPAPSPL--GTAV 119
GG W G +Q G K G E+ S +P L + P PL G A
Sbjct: 509 GGPEWQ-GGSQGALGTAGKTPGPREKLPAVRSSQGGSPALFTYNGMTDPGAQPLFFGVAQ 567
Query: 120 CPFSPHSSPSFSHHRTLSLFISPAPLSCPA 149
SPH +PS R + S +PL PA
Sbjct: 568 PQVSPHGTPSLPPPRVVGASPSESPLPSPA 597
Score = 33.1 bits (74), Expect = 0.21
Identities = 38/133 (28%), Positives = 49/133 (36%), Gaps = 40/133 (30%)
Query: 108 LQPAPSPLGTAVCPFSPHSSPSFSHHRTLSLFISPA-----PLSCPA------PRAQVHR 156
L P +P TA CP PS + S PA PL P P + H
Sbjct: 1300 LAPVANPSSTA-CP-----KPSVLSSKISSFGCDPAGFNRDPLGVPVAKKGPQPYSSPHS 1353
Query: 157 STPMGRALLTRVLLEPLRPW-----------AC------------PRLPRSPPGGAQSGR 193
+G L LE L P +C P+LPRSPPG A++
Sbjct: 1354 ELFLGPKDLAGCFLEELHPKPSARDAPPASSSCLCQDGEDAGSLEPQLPRSPPGTAETEP 1413
Query: 194 GGALAQPTLRCAA 206
G A + PTL ++
Sbjct: 1414 GRAASPPTLESSS 1426
Score = 29.3 bits (64), Expect = 3.1
Identities = 44/174 (25%), Positives = 61/174 (35%), Gaps = 22/174 (12%)
Query: 43 QPTPYSQRKGPRETHPDALKGGGGWGWGNTQSLSGECRKGVGAGEEKDGAAVSLSTPHLL 102
+P P R G R A G WG GE +K K A + S P
Sbjct: 3205 EPAPKHHR-GKRSAGKAAGSPGDPWGQ------EGEAKKDSPGERAKPRARSTPSNPD-- 3255
Query: 103 AASAGLQPAPSPLGTAVCPFSPHSSPSFSHHRTLS----LFISPAPLSCPAPRAQVH--- 155
A+ + + L A P P ++PS S L +P +C P H
Sbjct: 3256 GAATPDSASATALADAGSPGPPRTTPSPSPDPWAGGEPLLQATPVHEACKDPSRDCHHCG 3315
Query: 156 RSTPMGRALLTRVLLE-PLRPWACPRLPRSPPGGAQ-----SGRGGALAQPTLR 203
+ P L + + P R + CPR PR P + G G L +P L+
Sbjct: 3316 KRFPKPFKLQRHLAVHSPQRVYLCPRCPRVYPEHGELLAHLGGAHGLLERPELQ 3369
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 40.0 bits (92), Expect = 0.002
Identities = 46/158 (29%), Positives = 58/158 (36%), Gaps = 27/158 (17%)
Query: 4 GGSENAAALWISEGGRGPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDALKG 63
G + + A + G GPG GPGP TSR L P+ +P + P A
Sbjct: 50 GAARSTAVPPVPGPGPGPGPGPGPGSTSRRLDPK-----EPLGNQRAASPTPKQASATTP 104
Query: 64 GGGWGWGNTQSLSGECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVCPFS 123
G E R AG+E DG +L S G P+ SP P S
Sbjct: 105 G--------HESPRETRAQGPAGQEADGPRRTLQVDSRTQRS-GRSPSVSP-DRGSTPTS 154
Query: 124 PHSSPSFSHHRTLSLFISPAPLS--CPAPRAQVHRSTP 159
P+S P I+P P S CP + STP
Sbjct: 155 PYSVPQ----------IAPLPSSTLCPICKTSDLTSTP 182
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 39.7 bits (91), Expect = 0.002
Identities = 56/204 (27%), Positives = 71/204 (34%), Gaps = 42/204 (20%)
Query: 24 GPG---PEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDALKGGGGWGWGNTQSLSGECR 80
GPG E + + + PA +P + + P E P GGGG G G +G
Sbjct: 41 GPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGGGGGCGAQHWAAGRRA 100
Query: 81 KGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSPSFSHHRTLSLFI 140
+ E+ GAAV H+ AA +GL+ R
Sbjct: 101 Q----REQGAGAAVLADFGHVRAAPSGLRRR-----------RLQRRRGGRGGRGAGRAR 145
Query: 141 SPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPRL--PRSPPGGAQSGR--GGA 196
P P RA RS P RA PRL P PP A R G
Sbjct: 146 KPGP-----DRAGAERSLPAHRA---------------PRLARPPVPPSVAHVARASAGL 185
Query: 197 LAQPTLRCAAAPLRAWAWRSSDPP 220
A+P A P +WA R+S PP
Sbjct: 186 GARPVPGGPAGPRESWARRTSSPP 209
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 39.7 bits (91), Expect = 0.002
Identities = 51/172 (29%), Positives = 67/172 (38%), Gaps = 29/172 (16%)
Query: 83 VGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSPSFSHHRTLSLFISP 142
VGA E +A LS+P L AA + +PL A P P PS S + S SP
Sbjct: 4 VGAMEGTRQSAFLLSSPPL-AALHSMAEMKTPLYPAAYPPLPAGPPSSSSSSSSSSSPSP 62
Query: 143 APL-----------------SCPAPRAQVHRSTPMGRALLTRVLLEPLRPWAC-PRLPRS 184
PL S +P Q+ +TP G + +L P P A LP +
Sbjct: 63 -PLGTHNPGGLKPPATGGLSSLGSPPQQLSAATPHG---INDILSRPSMPVASGAALPSA 118
Query: 185 PPGGAQSGRGGALAQPTLRCAAAPLRAWAWRSSDPP------PAFSVFCHPP 230
P G+ S + + + AAA A A +S P P FS PP
Sbjct: 119 SPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPP 170
>gi|239747673 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 714
Score = 38.5 bits (88), Expect = 0.005
Identities = 42/136 (30%), Positives = 51/136 (37%), Gaps = 22/136 (16%)
Query: 94 VSLSTPHLLAASAGLQPAPSPLGTAVCPFS-----PH----SSPSFSHHRTLSLFISPA- 143
+S+S P + +S L P PSP CP + P SP +H SPA
Sbjct: 23 ISISVPSVWTSSP-LPPRPSPARAPRCPLTCLRPVPRLTCLGSPLPNHLSLPRAACSPAR 81
Query: 144 ----PLSCPAPR--AQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGGAL 197
P+SCP P A R + R TR L P P P PR P + S G
Sbjct: 82 VPRRPVSCPGPEPLALAARRSQSPRVASTRSLRPPGSPVPSPSSPRPVPVPSPSCASGWS 141
Query: 198 AQPTLRCAAAPLRAWA 213
P RAWA
Sbjct: 142 GPP-----VGGARAWA 152
>gi|239741542 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 510
Score = 38.5 bits (88), Expect = 0.005
Identities = 42/136 (30%), Positives = 51/136 (37%), Gaps = 22/136 (16%)
Query: 94 VSLSTPHLLAASAGLQPAPSPLGTAVCPFS-----PH----SSPSFSHHRTLSLFISPA- 143
+S+S P + +S L P PSP CP + P SP +H SPA
Sbjct: 23 ISISVPSVWTSSP-LPPRPSPARAPRCPLTCLRPVPRLTCLGSPLPNHLSLPRAACSPAR 81
Query: 144 ----PLSCPAPR--AQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGGAL 197
P+SCP P A R + R TR L P P P PR P + S G
Sbjct: 82 VPRRPVSCPGPEPLALAARRSQSPRVASTRSLRPPGSPVPSPSSPRPVPVPSPSCASGWS 141
Query: 198 AQPTLRCAAAPLRAWA 213
P RAWA
Sbjct: 142 GPP-----VGGARAWA 152
>gi|18426913 drebrin 1 isoform b [Homo sapiens]
Length = 651
Score = 38.1 bits (87), Expect = 0.007
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 18/130 (13%)
Query: 103 AASAGLQPAPSPLGTAVCPFSPHSSPSFSHHRTLSLFISPAPLSCPAPRAQVHRSTPMGR 162
+ASAG PSP F+ HR ++ P P+ +P STP+
Sbjct: 304 SASAGSCDVPSP-------FNHRPGSHLDSHRRMA----PTPIPTRSPSDSSTASTPVAE 352
Query: 163 ALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGGALAQPTLRCAAAPLRAWAWRSSDPPPA 222
+ L+ + P LP PP ++ + AAAP +AWA +PP A
Sbjct: 353 QI--ERALDEVTSSQPPPLPPPPPPAQETQEPSPILDSEETRAAAP-QAWAGPMEEPPQA 409
Query: 223 FSVFCHPPRG 232
+ PPRG
Sbjct: 410 QA----PPRG 415
>gi|18426915 drebrin 1 isoform a [Homo sapiens]
Length = 649
Score = 38.1 bits (87), Expect = 0.007
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 18/130 (13%)
Query: 103 AASAGLQPAPSPLGTAVCPFSPHSSPSFSHHRTLSLFISPAPLSCPAPRAQVHRSTPMGR 162
+ASAG PSP F+ HR ++ P P+ +P STP+
Sbjct: 302 SASAGSCDVPSP-------FNHRPGSHLDSHRRMA----PTPIPTRSPSDSSTASTPVAE 350
Query: 163 ALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGGALAQPTLRCAAAPLRAWAWRSSDPPPA 222
+ L+ + P LP PP ++ + AAAP +AWA +PP A
Sbjct: 351 QI--ERALDEVTSSQPPPLPPPPPPAQETQEPSPILDSEETRAAAP-QAWAGPMEEPPQA 407
Query: 223 FSVFCHPPRG 232
+ PPRG
Sbjct: 408 QA----PPRG 413
>gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precursor
[Homo sapiens]
Length = 864
Score = 38.1 bits (87), Expect = 0.007
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 17 GGRGPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDALKGGGGWGWGNTQSLS 76
GGRG G G WTSR+ PQ+G +LQ + GG+G G
Sbjct: 265 GGRGGAAGGGGGWTSRAPSPQAGRSLQEGAEGGQGCSEAWATLGWAAAGGFGGG-----G 319
Query: 77 GECRKGVGAGEEKDGAA 93
G C G G G + G A
Sbjct: 320 GACTAGGGGGGYRGGDA 336
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 38.1 bits (87), Expect = 0.007
Identities = 40/141 (28%), Positives = 53/141 (37%), Gaps = 27/141 (19%)
Query: 9 AAALWISEGGRGPGRGPGPEWTSRSLLPQSGPALQ-----PTPYSQR------KGPRETH 57
A+AL + G G P P +L P++ PA P PY+Q GP T
Sbjct: 331 ASALSTTPGNNGV---PAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQ 387
Query: 58 P-----DALKGGGGWGWGNTQSLSGECRKGVGAGEEKDGAAVSLSTPH-----LLAASAG 107
P GGGG G S S G GAG++ + S L++S G
Sbjct: 388 PRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGG 447
Query: 108 LQPAPSPLGTAVCPFSPHSSP 128
+ LG P PH+ P
Sbjct: 448 NNASSQALGP---PSGPHNPP 465
>gi|223972612 Crm, cramped-like [Homo sapiens]
Length = 1269
Score = 37.4 bits (85), Expect = 0.011
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 73 QSLSGECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSPSFSH 132
+SL GE G A EE G TP AG P+P G P P SP H
Sbjct: 26 ESLEGEGAGGADAAEESSGTKRDEKTPR-----AGADGPPAPPGAPQAPSPPQGSPQDQH 80
Query: 133 H 133
H
Sbjct: 81 H 81
>gi|239752133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 37.4 bits (85), Expect = 0.011
Identities = 61/214 (28%), Positives = 75/214 (35%), Gaps = 61/214 (28%)
Query: 18 GRGPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDALKGGGGWGWGNTQSLSG 77
GRG RG GP S + P P PY++R GPR W T +G
Sbjct: 50 GRGTYRGAGPGAGS------APPGETPAPYTRRSGPRSR-----------TWRRTWCWTG 92
Query: 78 ECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSPSFSHHRTLS 137
D AAV + +LA SA L PA F P +H S
Sbjct: 93 ------------DSAAVGAAA--VLACSARLSPADG--------FGAEEGP-LAHLEERS 129
Query: 138 LFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGGAL 197
+ LS P P+ H TP P A R R PPG A+ RG
Sbjct: 130 EGWASTFLSAPGPQ---HPPTP------------PACSGAATR--REPPGNARQSRGVGA 172
Query: 198 AQPTLRCAAAPLRAWAWRSSDPPPAFSVFCHPPR 231
+P + P R R++ P A VF P R
Sbjct: 173 GKPEPQ--RRPPR--GSRAARRPRARRVFTDPRR 202
>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 411
Score = 37.4 bits (85), Expect = 0.011
Identities = 61/214 (28%), Positives = 75/214 (35%), Gaps = 61/214 (28%)
Query: 18 GRGPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDALKGGGGWGWGNTQSLSG 77
GRG RG GP S + P P PY++R GPR W T +G
Sbjct: 237 GRGTYRGAGPGAGS------APPGETPAPYTRRSGPRSR-----------TWRRTWCWTG 279
Query: 78 ECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSPSFSHHRTLS 137
D AAV + +LA SA L PA F P +H S
Sbjct: 280 ------------DSAAVGAAA--VLACSARLSPADG--------FGAEEGP-LAHLEERS 316
Query: 138 LFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGGAL 197
+ LS P P+ H TP P A R R PPG A+ RG
Sbjct: 317 EGWASTFLSAPGPQ---HPPTP------------PACSGAATR--REPPGNARQSRGVGA 359
Query: 198 AQPTLRCAAAPLRAWAWRSSDPPPAFSVFCHPPR 231
+P + P R R++ P A VF P R
Sbjct: 360 GKPEPQ--RRPPR--GSRAARRPRARRVFTDPRR 389
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 37.4 bits (85), Expect = 0.011
Identities = 54/216 (25%), Positives = 78/216 (36%), Gaps = 21/216 (9%)
Query: 15 SEGG-RGPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDALKGGGGWGWGNTQ 73
S+GG P GP + + + GPA+ TP S ++GP P KG +
Sbjct: 1356 SKGGPTTPSSKEGPTPPAATPSHKGGPAM--TPPSPKRGPAIPSP---KGDPT----SPA 1406
Query: 74 SLSGECRKGVGAGEEKDGAAV----SLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSPS 129
+ +K ++GAA L+ P + S PA S P ++PS
Sbjct: 1407 VIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATS------APKGGPATPS 1460
Query: 130 FSHHRTLSLFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGA 189
TL P+P PAP+ S+P + P P P P+ P
Sbjct: 1461 SKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATP 1520
Query: 190 QSGRGGALAQPTLRCAAAPLRAWAWRSSDPPPAFSV 225
S R TL P A + + PPA +V
Sbjct: 1521 SSRRDPIAPTATLLSKKTP-ATLAPKEALIPPAMTV 1555
Score = 31.6 bits (70), Expect = 0.62
Identities = 46/168 (27%), Positives = 61/168 (36%), Gaps = 21/168 (12%)
Query: 36 PQSGPALQPTPYSQRKGPRETHPDALKGG----GGWGWGNTQSLSGECRKGVGAGEEKDG 91
P+ G A P+P P T P KGG G T + + KG A G
Sbjct: 1205 PKGGLAT-PSPKGAPTTPAATPPSP-KGGLATPSPKGAPTTPAATPPSPKGGPATPPPKG 1262
Query: 92 AAVS-LSTPHLLAASAGLQP---APSPLGTAVCPFSPHSSPSFSHHRTLSLFISPAPLSC 147
A +TP L P AP+P V P SP P+ S + +P P +
Sbjct: 1263 APTPPAATPPSLKGGLATPPHKGAPNP--AVVTPPSPKGGPATSPPKG-----APTPPAA 1315
Query: 148 PAPRAQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGG 195
P + TP + T + P P P LP + P S +GG
Sbjct: 1316 TPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTP----SSKGG 1359
Score = 30.8 bits (68), Expect = 1.1
Identities = 35/145 (24%), Positives = 51/145 (35%), Gaps = 22/145 (15%)
Query: 73 QSLSGECRKGVGAGEEKDGAAV----SLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSP 128
Q S + KG A G STP AA + P P + P P S P
Sbjct: 1742 QKDSSKTAKGKDASHSPKGPLAPPESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLP 1801
Query: 129 SFSHHRTLSLFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRP----WACPRLPRS 184
++P+P+ P+ Q S+P L+ +PL P P +P
Sbjct: 1802 -----------LAPSPVPTLPPKQQFLPSSP---GLVLESPSKPLAPADEDELLPLIPPE 1847
Query: 185 PPGGAQSGRGGALAQPTLRCAAAPL 209
P G + + PT + A P+
Sbjct: 1848 PISGGVPFQSVLVNMPTPKSAGIPV 1872
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 36.6 bits (83), Expect = 0.019
Identities = 58/235 (24%), Positives = 73/235 (31%), Gaps = 55/235 (23%)
Query: 3 PGGSENAAALWISEGGRGPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDALK 62
P G A GPG GPGP GP P P + GP
Sbjct: 154 PAGPAKPAGPAALAARAGPGPGPGP-----------GPGPGPGP-GKPAGP--------- 192
Query: 63 GGGGWGWGNTQSLSGECRKGVGAGEEKDGAAVSLSTPHLLAASAGL----QPAPSPLGTA 118
GA + +G+A L++ H A + L A PL
Sbjct: 193 ---------------------GAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKP 231
Query: 119 VCPFSPHSSPSFSHHRTLSLFISPAPLSCPAPRAQVHR--STPMGRALLTRVLLEPL-RP 175
P + +P F +P+P + PAP A P A L R P P
Sbjct: 232 AAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPP 291
Query: 176 WACPRLPRSPPGGAQSGRGGALAQPTLRCAAAPLRAWAWRSSDPPPAFSVFCHPP 230
A P +P PP AQ+G A A P A S P P + P
Sbjct: 292 TAAPAVP--PPAAAQNGGSAGAAPAPAPAAGGP----AGVSGQPGPGAAAAAPAP 340
>gi|189027090 cytoplasmic polyadenylation element binding protein 4
[Homo sapiens]
Length = 729
Score = 36.6 bits (83), Expect = 0.019
Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 16/125 (12%)
Query: 82 GVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSS--PSFSHHRTLSLF 139
GV A +GA + + PH ++ G +P + P S H P F HH +
Sbjct: 194 GVPAASANNGALLFQNFPHHVSPGFGGSFSPQ-----IGPLSQHHPHHPHFQHHHSQHQQ 248
Query: 140 ISPAPLSCPAPRAQVHRSTPMGRAL-LTRVLLEPLRPWACPRLPR-------SPPGGAQS 191
+P S P P HR+ + L L +P PW+ + P SP GG
Sbjct: 249 QRRSPAS-PHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWSPGGGGYG 307
Query: 192 GRGGA 196
G GG+
Sbjct: 308 GWGGS 312
Score = 29.3 bits (64), Expect = 3.1
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 19 RGPGRGPGPEWTSRSLLPQSGPALQ------PTPYSQRKGPRETHPDALK-GGGGW-GWG 70
R P P +T R+ P L P+P+S + P T + GGGG+ GWG
Sbjct: 251 RSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWSPGGGGYGGWG 310
Query: 71 NTQSLSGECRKGVGAG 86
+Q + R+G+ G
Sbjct: 311 GSQ--GRDHRRGLNGG 324
>gi|239756888 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 36.2 bits (82), Expect = 0.025
Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 15/129 (11%)
Query: 92 AAVSLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSPSFSHHRTLSLFISPAPLSCPAPR 151
A S P + S GL +P+P G +V H + H ++L P P +
Sbjct: 12 ARPSAGEPVRIWFSVGLPVSPAPNGLSVPLMVDHGPCTIGHGGAITL---PGPHLLQKAQ 68
Query: 152 AQVHRST--PMGRALLTRVLL----------EPLRPWACPRLPRSPPGGAQSGRGGALAQ 199
ST P G A VLL + L PW C P PP G+ G A
Sbjct: 69 KDSSSSTGSPAGSAHYLLVLLPAQAQSQLQLQVLVPWGCMASPSLPPHGSWRGPAAAAVP 128
Query: 200 PTLRCAAAP 208
L A P
Sbjct: 129 LPLTSEAGP 137
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 35.4 bits (80), Expect = 0.043
Identities = 53/202 (26%), Positives = 76/202 (37%), Gaps = 35/202 (17%)
Query: 18 GRGPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDALKGGGGWGWGNTQSLSG 77
G GP P S+ L GPA P R G H ++K + + G
Sbjct: 711 GDGPPGPSSPMSRSQEYLLDEGPAPGTPPREARPG---RHGHSIKRA------SVPPVPG 761
Query: 78 ECRKGVGAG-----------EEKDGAAVSLSTPHLLA-ASAGLQPAPSPLGTAVCPFSPH 125
+ R+ + G + + G+ +L PH A A+A ++P P L P SP
Sbjct: 762 KPRQVLPPGTSHFTPPQTPTKTRPGSPQALGGPHGPAPATAKVKPTPQLLPPTERPMSPR 821
Query: 126 SSPSFSHHRTLSLFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSP 185
S P HR + ++ P P+ +V + P G A P P A P L P
Sbjct: 822 SLPQSPTHRGFA-YVLPQPV-----EGEVGPAAP-GPA-------PPPVPTAVPTLCLPP 867
Query: 186 PGGAQSGRGGALAQPTLRCAAA 207
A+ GR A R AA+
Sbjct: 868 EADAEPGRPKKRAHSLNRYAAS 889
Score = 29.6 bits (65), Expect = 2.4
Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 20/114 (17%)
Query: 101 LLAASAGLQPAPSPLGTAVCPFS-PHSSPSFSHHRTLSLFISPA-PLSCPAPRAQVHRST 158
L + SAG PAPSP + P +P SL SPA P S AP V
Sbjct: 1290 LPSGSAGPSPAPSPARQPPAALAKPPGTPP-------SLGASPAKPPSPGAPALHVPAKP 1342
Query: 159 PMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGG-ALAQPTLRCAAAPLRA 211
P A A P +PP GA G + T C AA L+A
Sbjct: 1343 PRAAAAAA----------AAAAAPPAPPEGASPGDSARQKLEETSACLAAALQA 1386
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 35.4 bits (80), Expect = 0.043
Identities = 62/234 (26%), Positives = 82/234 (35%), Gaps = 42/234 (17%)
Query: 3 PGGS-------ENAAALWIS-EGGRGPGRGPGPEWTSRSLL-PQSGPALQPTPYSQRKGP 53
PGG+ ++++AL S E G PG P + L P+S P L+ P S +GP
Sbjct: 302 PGGARARRARLQHSSALTASVEEGGVPGEDPSSRPATPELAEPESAPTLRVEPPSPPEGP 361
Query: 54 RETHPDALKGGGGWGWGNTQSLSGECRKGVGAGEEKDGAAVSLSTPHLLAASAG--LQPA 111
PD K G +G C EE A +++P A G P
Sbjct: 362 PNPGPDGGKQDG------EAPPAGPCAPATDKAEEVVCAPEDVASPFPTAIPEGDTTPPE 415
Query: 112 PSPLGTAVCPFSPHSSPSFSHHRTLSLFISPAPLSC---------PAPRAQVHRSTPMGR 162
P T+ P S P R++ P P PAP + T R
Sbjct: 416 TDPAATSEAP-SARDGP----ERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPER 470
Query: 163 ALLT---RVLLEP-LRPWACPRLPRS----PPGGAQSGRGGALAQPTLRCAAAP 208
T R+ EP P P P+S P A G A P L A +P
Sbjct: 471 GAGTEPERIGTEPSTAPAPSPPAPKSCLKHRPAAASE---GPAASPPLAAAESP 521
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 35.0 bits (79), Expect = 0.056
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 73 QSLSGECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSPSFSH 132
QSL G C++ V A+V+++TP LL + Q P+P G P +P S+ +H
Sbjct: 964 QSL-GPCQEAVAPSTHPTSASVTVTTPGLLLS----QALPAPPG--ALPLAPSST---AH 1013
Query: 133 HRTLSLFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSG 192
+T +P P S P A V R+T + + + P P P L S G + S
Sbjct: 1014 SQT-----TPPPSSRPRTTASVPRTT-----VWPVLTVPPTAPSPAPSLVASAFGESGST 1063
Query: 193 RGGA 196
G +
Sbjct: 1064 DGSS 1067
>gi|30840978 neuroligin 2 [Homo sapiens]
Length = 835
Score = 35.0 bits (79), Expect = 0.056
Identities = 39/125 (31%), Positives = 48/125 (38%), Gaps = 19/125 (15%)
Query: 17 GGRGPG-RGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDALKGGGGWGWGNTQSL 75
GG G G G GP LLP +G L P E LK GGG G ++L
Sbjct: 716 GGSGSGVPGGGP------LLPAAGRELPPE--------EELVSLQLKRGGGVGADPAEAL 761
Query: 76 SGECRKGVGAGEEKDGAAVSLSTPHLLAA-SAGLQPAPSPLGTAVCPFSPHSSP---SFS 131
C + V L P L +GL P P P ++ PF P P + S
Sbjct: 762 RPACPPDYTLALRRAPDDVPLLAPGALTLLPSGLGPPPPPPPPSLHPFGPFPPPPPTATS 821
Query: 132 HHRTL 136
H+ TL
Sbjct: 822 HNNTL 826
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 35.0 bits (79), Expect = 0.056
Identities = 53/220 (24%), Positives = 73/220 (33%), Gaps = 36/220 (16%)
Query: 25 PGPEWTSRSLLPQSGPALQPTPYSQRKG--------------------PRETHPDALKGG 64
P P T L+P PA P P SQ + P T P + + G
Sbjct: 968 PVPVSTPSGLVPPLSPATLPGPTSQPQKVLLPSSTRITYVQSAGGHALPLGTSPASSQAG 1027
Query: 65 GGWGWGNTQSLS-GECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVC--P 121
+G T S++ G G + P L G+ P PSP C P
Sbjct: 1028 TVTSYGPTSSVALGFTSLGPSGPAFVQPLLSAGQAPLLAPGQVGVSPVPSPQLPPACAAP 1087
Query: 122 FSPHSSPSFSHHRTLSLFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPRL 181
P + +S SPAP S AP AQ ++ P L + P A L
Sbjct: 1088 GGPVITAFYSG--------SPAPTS-SAPLAQPSQAPPS----LVYTVATSTTPPAATIL 1134
Query: 182 PRSPPGGAQSGRGGALAQPTLRCAAAPLRAWAWRSSDPPP 221
P+ PP A + P+ + A ++ P P
Sbjct: 1135 PKGPPAPATATPAPTSPFPSATAGSMTYSLVAPKAQRPSP 1174
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 34.7 bits (78), Expect = 0.073
Identities = 46/186 (24%), Positives = 62/186 (33%), Gaps = 37/186 (19%)
Query: 20 GPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRE-----THPDALKGGGGWGWGNTQS 74
GP GPGP L P GP P GP +HP G + Q
Sbjct: 14 GPSPGPGPS-PGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTMGSTDF----PQE 68
Query: 75 LSGECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSPSFSHHR 134
+ K + +K G + + G++P +G P HS S H
Sbjct: 69 GMHQMHKPIDGIHDK-GIVEDIHCGSM--KGTGMRPPHPGMGPPQSPMDQHSQGYMSPH- 124
Query: 135 TLSLFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRG 194
P+PL P H S+PM T P++P S PG G
Sbjct: 125 -------PSPLGAPE-----HVSSPMSGGGPTP-----------PQMPPSQPGALIPGDP 161
Query: 195 GALAQP 200
A++QP
Sbjct: 162 QAMSQP 167
Score = 33.1 bits (74), Expect = 0.21
Identities = 43/183 (23%), Positives = 61/183 (33%), Gaps = 34/183 (18%)
Query: 18 GRGPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDALKGGGGWGWGNTQSLSG 77
G PG GP P + P GP P +HP G + Q
Sbjct: 28 GPSPGPGPSPGSVHSMMGPSPGP------------PSVSHPMPTMGSTDF----PQEGMH 71
Query: 78 ECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSPSFSHHRTLS 137
+ K + +K G + + G++P +G P HS S H
Sbjct: 72 QMHKPIDGIHDK-GIVEDIHCGSM--KGTGMRPPHPGMGPPQSPMDQHSQGYMSPH---- 124
Query: 138 LFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGGAL 197
P+PL P H S+PM T + P +P A +P P +Q RG +
Sbjct: 125 ----PSPLGAPE-----HVSSPMSGGGPTPPQMPPSQPGAL--IPGDPQAMSQPNRGPSP 173
Query: 198 AQP 200
P
Sbjct: 174 FSP 176
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 34.7 bits (78), Expect = 0.073
Identities = 46/186 (24%), Positives = 62/186 (33%), Gaps = 37/186 (19%)
Query: 20 GPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRE-----THPDALKGGGGWGWGNTQS 74
GP GPGP L P GP P GP +HP G + Q
Sbjct: 14 GPSPGPGPS-PGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTMGSTDF----PQE 68
Query: 75 LSGECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSPSFSHHR 134
+ K + +K G + + G++P +G P HS S H
Sbjct: 69 GMHQMHKPIDGIHDK-GIVEDIHCGSM--KGTGMRPPHPGMGPPQSPMDQHSQGYMSPH- 124
Query: 135 TLSLFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRG 194
P+PL P H S+PM T P++P S PG G
Sbjct: 125 -------PSPLGAPE-----HVSSPMSGGGPTP-----------PQMPPSQPGALIPGDP 161
Query: 195 GALAQP 200
A++QP
Sbjct: 162 QAMSQP 167
Score = 33.1 bits (74), Expect = 0.21
Identities = 43/183 (23%), Positives = 61/183 (33%), Gaps = 34/183 (18%)
Query: 18 GRGPGRGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDALKGGGGWGWGNTQSLSG 77
G PG GP P + P GP P +HP G + Q
Sbjct: 28 GPSPGPGPSPGSVHSMMGPSPGP------------PSVSHPMPTMGSTDF----PQEGMH 71
Query: 78 ECRKGVGAGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSPSFSHHRTLS 137
+ K + +K G + + G++P +G P HS S H
Sbjct: 72 QMHKPIDGIHDK-GIVEDIHCGSM--KGTGMRPPHPGMGPPQSPMDQHSQGYMSPH---- 124
Query: 138 LFISPAPLSCPAPRAQVHRSTPMGRALLTRVLLEPLRPWACPRLPRSPPGGAQSGRGGAL 197
P+PL P H S+PM T + P +P A +P P +Q RG +
Sbjct: 125 ----PSPLGAPE-----HVSSPMSGGGPTPPQMPPSQPGAL--IPGDPQAMSQPNRGPSP 173
Query: 198 AQP 200
P
Sbjct: 174 FSP 176
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 34.7 bits (78), Expect = 0.073
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 23/105 (21%)
Query: 75 LSGECRKGVG--AGEEKDGAAVSLSTPHLLAASAGLQPAPSPLGTAVCPFSPHSSPSFSH 132
L+G C G G AGE A + +P G QPA G A P SPH +
Sbjct: 233 LTGACAGGPGLPAGELYGWAVETTPSP-------GPQPAALTTGEAAAPESPHQAEP--- 282
Query: 133 HRTLSLFISPAPLSC-----PAPRAQVHRSTPMGRALLTRVLLEP 172
++SP+P +C P+P A GR +L +V+ P
Sbjct: 283 ------YLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGHP 321
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,947,593
Number of Sequences: 37866
Number of extensions: 900940
Number of successful extensions: 4025
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 342
Number of HSP's that attempted gapping in prelim test: 3687
Number of HSP's gapped (non-prelim): 670
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.