Search of human proteins with 83816964

Search of human proteins with 83816964

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|83816964 Holliday junction recognition protein [Homo
sapiens]
         (748 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|83816964 Holliday junction recognition protein [Homo sapiens]     1509   0.0  
gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens]                41   0.004
gi|148806881 hypothetical protein LOC57608 [Homo sapiens]              38   0.039
gi|30795231 brain abundant, membrane attached signal protein 1 [...    37   0.067
gi|21493045 A-kinase anchor protein 6 [Homo sapiens]                   37   0.067
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         35   0.25 
gi|239757559 PREDICTED: hypothetical protein [Homo sapiens]            35   0.33 
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s...    35   0.33 
gi|115511036 alpha-kinase 3 [Homo sapiens]                             35   0.33 
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               33   0.97 
gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]                       33   0.97 
gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]                       33   0.97 
gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]                       33   0.97 
gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]                       33   0.97 
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]       33   1.3  
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho...    33   1.3  
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho...    33   1.3  
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho...    33   1.3  
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho...    33   1.3  
gi|131888281 hypothetical protein LOC55216 isoform b [Homo sapiens]    33   1.3  
gi|131889432 hypothetical protein LOC55216 isoform a [Homo sapiens]    33   1.3  
gi|131889391 hypothetical protein LOC55216 isoform a [Homo sapiens]    33   1.3  
gi|46198301 hypothetical protein LOC79081 [Homo sapiens]               33   1.3  
gi|24308394 hypothetical protein LOC140893 [Homo sapiens]              33   1.3  
gi|145966685 TLX1 divergent [Homo sapiens]                             32   1.6  
gi|239743293 PREDICTED: mucin 12 [Homo sapiens]                        32   1.6  
gi|153945755 zinc finger protein 608 [Homo sapiens]                    32   1.6  
gi|239752069 PREDICTED: hypothetical protein [Homo sapiens]            32   2.2  
gi|239746566 PREDICTED: hypothetical protein XP_002343789 [Homo ...    32   2.2  
gi|7662302 TBK1 binding protein 1 [Homo sapiens]                       32   2.2  

>gi|83816964 Holliday junction recognition protein [Homo sapiens]
          Length = 748

 Score = 1509 bits (3908), Expect = 0.0
 Identities = 748/748 (100%), Positives = 748/748 (100%)

Query: 1   MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP 60
           MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP
Sbjct: 1   MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP 60

Query: 61  QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD 120
           QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD
Sbjct: 61  QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD 120

Query: 121 ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL 180
           ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL
Sbjct: 121 ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL 180

Query: 181 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS 240
           PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS
Sbjct: 181 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS 240

Query: 241 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR 300
           SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR
Sbjct: 241 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR 300

Query: 301 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL 360
           YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL
Sbjct: 301 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL 360

Query: 361 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP 420
           EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP
Sbjct: 361 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP 420

Query: 421 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL 480
           TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL
Sbjct: 421 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL 480

Query: 481 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS 540
           ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS
Sbjct: 481 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS 540

Query: 541 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT 600
           DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT
Sbjct: 541 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT 600

Query: 601 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS 660
           VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS
Sbjct: 601 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS 660

Query: 661 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN 720
           STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN
Sbjct: 661 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN 720

Query: 721 SEERGENTSYRMEEKSDFMLEKLETKSV 748
           SEERGENTSYRMEEKSDFMLEKLETKSV
Sbjct: 721 SEERGENTSYRMEEKSDFMLEKLETKSV 748


>gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens]
          Length = 739

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 9/115 (7%)

Query: 137 VPQSPLKNELRRKYLTQVDIL----LQGAEYFECAGNRAGRDVRVTPLPS---LASPAVP 189
           +P SP + ++  +  +  D+L      GA     AG+  G+  R  P+P+   L    + 
Sbjct: 259 IPASPSRTKIPAEKESHRDVLPDKPAPGAVNVPAAGSHLGQGKRAIPVPNKLGLKKTLLK 318

Query: 190 APGYCSRISRKSPGDPAKPASSPREWDPL--HPSSTDMALVPRNDSLSLQETSSS 242
           APG  S ++RKS   P    +S     P      S++ A +P N S  L   S S
Sbjct: 319 APGSTSNLARKSSSGPVWSGASSACTSPAVGKAKSSEFASIPANSSRPLSNISKS 373


>gi|148806881 hypothetical protein LOC57608 [Homo sapiens]
          Length = 1359

 Score = 37.7 bits (86), Expect = 0.039
 Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 20/164 (12%)

Query: 468 RGGPASPGGLQGLETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKT 527
           +G P  P   + L  + L  P S+     +S+  E+  K   E      +S SSSS   +
Sbjct: 803 KGEPTGPCNSKQLFGQFLLKPVSRRPWDLISQ-LESFNKELQEE----EESSSSSSSSSS 857

Query: 528 NPTHSATRPQQTSDLHVQGNSSGIFRKS----VSPSKTLSVPDKEV--PGHGRNRYDEIK 581
           +   S   PQQ +  H +    G    S    V P   + VP+  V   G G ++ +   
Sbjct: 858 SSEESEAEPQQENRAHCRQEDVGFRGNSPEMRVEPQPRMWVPESPVCRSGRGESKSESWS 917

Query: 582 EEFDKLHQKYCLKSPGQMTV------PLCI---GVSTDKASMEV 616
           EE    H +    SPG+  V      P C      S +K  +EV
Sbjct: 918 EELQPGHPRAWPPSPGRFRVEEGGGAPFCSADGSTSAEKRHLEV 961


>gi|30795231 brain abundant, membrane attached signal protein 1
           [Homo sapiens]
          Length = 227

 Score = 37.0 bits (84), Expect = 0.067
 Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 21/151 (13%)

Query: 73  ERNEGEIQDSSMKPA------DRTDGSVQAAAWGPELPSHRTVLGADSKSGEVDATSDQE 126
           E  EGE   ++ K        ++T+G+ +A A  P+ P         +  GE    ++  
Sbjct: 67  EEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQEQAAPGPAAGGEAPKAAEAA 126

Query: 127 ESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPLPSLASP 186
            + A + APA  + P K E   K               E     A ++ +    P  AS 
Sbjct: 127 AAPAESAAPAAGEEPSKEEGEPKKT-------------EAPAAPAAQETKSDGAP--ASD 171

Query: 187 AVPAPGYCSRISRKSPGDPAKPASSPREWDP 217
           + P     +  S+++P     P+S+P+   P
Sbjct: 172 SKPGSSEAAPSSKETPAATEAPSSTPKAQGP 202


>gi|21493045 A-kinase anchor protein 6 [Homo sapiens]
          Length = 2319

 Score = 37.0 bits (84), Expect = 0.067
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 15/134 (11%)

Query: 304 RMNKTYCKGAR-RSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFLE- 361
           R+N  Y + +R +    + E   PC  P +GTG+ +  KN    +     L      +E 
Sbjct: 484 RLNDCYKEKSRLKKPHKTSEEVPPCRTPKRGTGSGKQAKNTKSSAVPNGELSYTSKAIEG 543

Query: 362 --VNRPQIHKLDP----SWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVK 415
              N      L+P    SW  +    S+ SS   F  S+  ++  +N       ++SPV 
Sbjct: 544 PQTNSASTSSLEPCNQRSWNAKLQLQSETSSSPAFTQSSESSVGSDN-------IMSPVP 596

Query: 416 IVSRPTIRQGHGEN 429
           ++S+   ++G   +
Sbjct: 597 LLSKHKSKKGQASS 610


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 35.0 bits (79), Expect = 0.25
 Identities = 46/174 (26%), Positives = 66/174 (37%), Gaps = 26/174 (14%)

Query: 60  PQGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGP------ELPSHRTVLGAD 113
           P    I  G +++   E  +  S  +P  R      AA+  P      + P+ R   G D
Sbjct: 386 PGDSEIEEGEIVQPEEEPRLALSLFRPGGRAARPTPAASATPTAQPLPQPPAPRAPEGDD 445

Query: 114 SKSGEVDATSDQEESVAWALAPAVPQSPLKN------ELRRKYLTQVDILLQGAEYFECA 167
             S  + A SD E ++   L    P  P  +      +LRRK LTQ     +   Y +  
Sbjct: 446 FLS--LHAESDGEGALQVDLGEPAPAPPAADSRWGGLDLRRKILTQ-----RRERYRQ-- 496

Query: 168 GNRAGRDVRVTPLPSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPS 221
                R     P P+ A+ A P     SR  RK  G+  + ASS     P  P+
Sbjct: 497 -----RSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPA 545



 Score = 30.4 bits (67), Expect = 6.3
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 9/52 (17%)

Query: 178 TPLPSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVP 229
           +P PS +SP+ P P          P  PA PA     +DP HP  TD A  P
Sbjct: 198 SPSPSSSSPSPPPPP-------PPPAPPAPPAPRFDIYDPFHP--TDEAYSP 240


>gi|239757559 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 196

 Score = 34.7 bits (78), Expect = 0.33
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 167 AGNRAGRDVRVTPLPSLASPAVPAPGYCSRISRKSPGDPAKPASSP 212
           A ++A + +R TPL +   P    PG C+R  R+ P  PA   ++P
Sbjct: 130 AQSQASQLIRPTPLGTRERPLAAPPGNCARSRREGPSRPAPTGAAP 175


>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
            sapiens]
          Length = 4911

 Score = 34.7 bits (78), Expect = 0.33
 Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 128  SVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRA----GRDVRVTPLPSL 183
            SV ++  PA P+  +     R  +T+  ++     + + A NR     G  VR  P    
Sbjct: 2215 SVPYSQPPATPRPRISEGFTRSSMTRPVLMPNQDPFLQAAQNRGPALPGPLVR-PPDTCS 2273

Query: 184  ASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETSSSS 243
             +P  P PG     SR SP      A  P +  P+ P S       ++DS    +T+   
Sbjct: 2274 QTPRPPGPGLSDTFSRVSP----SAARDPYDQSPMTPRS-------QSDSFGTSQTAHDV 2322

Query: 244  FLSSQPFEDDDICNVTISDLYA 265
                +P  +   C  + S +++
Sbjct: 2323 ADQPRPGSEGSFCASSNSPMHS 2344


>gi|115511036 alpha-kinase 3 [Homo sapiens]
          Length = 1907

 Score = 34.7 bits (78), Expect = 0.33
 Identities = 53/232 (22%), Positives = 73/232 (31%), Gaps = 39/232 (16%)

Query: 483 RRLSLPSSKAKAKSLSEAFENLGKRSLEAG--------RCLPKSDSSSSLPKTNPTHSAT 534
           R L   S   K K   E+ + L K  LE           C+P SD   S     P     
Sbjct: 508 RALKEESGAKKKKKDEESKQGLRKPELEKAAQSRRSSENCIPSSDEPDSCGTQGPVGVEQ 567

Query: 535 RPQQTSDLHVQGNSSGIFRKSVSPSKTLSVPDKEV----PGHGRNRYDEIKEEF-DKLHQ 589
              Q      +G  S     +  P+  +  PDK      PG G+  Y  +K+ + +    
Sbjct: 568 VQTQPRGRAARGPGSSGTDSTRKPASAVGTPDKAQKAPGPGPGQEVYFSLKDMYLENTQA 627

Query: 590 KYCLKSPGQMTVPLCIGVSTDKASMEVRYQTEGFLG-------KLNPDP--HFQGFQKLP 640
              L   G  T+ +     + K    +R ++EG  G        L P P   F   +  P
Sbjct: 628 VRPLGEEGPQTLSVRAPGESPKGKAPLRARSEGVPGAPGQPTHSLTPQPTRPFNRKRFAP 687

Query: 641 SSPLG-----------------CRKSLLGSTAIEAPSSTCVARAITRDGTRD 675
             P G                 C    LG    +A        A  R GTRD
Sbjct: 688 PKPKGEATTDSKPISSLSQAPECGAQSLGKAPPQASVQVPTPPARRRHGTRD 739


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 33.1 bits (74), Expect = 0.97
 Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 18/83 (21%)

Query: 185 SPAVPAPGYCSRISRKSPGDPAK----PASSPREWDPLHP--SSTDMAL-------VPRN 231
           +PAVP PG     S+K  G  A     P SSPR+  PL P  ++ D+ L        PR 
Sbjct: 520 APAVPTPGSAPTGSKKPIGSEASKKAGPKSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQ 579

Query: 232 DSLSLQET-----SSSSFLSSQP 249
              S Q T     + + FLSS P
Sbjct: 580 PQPSQQTTPALVLAPAQFLSSSP 602


>gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]
          Length = 844

 Score = 33.1 bits (74), Expect = 0.97
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 509 LEAGRCLPKSDSSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSP 558
           LE GRC   SDSSSS  + + + S++  +  S      N+S I R +  P
Sbjct: 14  LEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPP 63


>gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]
          Length = 852

 Score = 33.1 bits (74), Expect = 0.97
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 509 LEAGRCLPKSDSSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSP 558
           LE GRC   SDSSSS  + + + S++  +  S      N+S I R +  P
Sbjct: 14  LEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPP 63


>gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]
          Length = 858

 Score = 33.1 bits (74), Expect = 0.97
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 509 LEAGRCLPKSDSSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSP 558
           LE GRC   SDSSSS  + + + S++  +  S      N+S I R +  P
Sbjct: 14  LEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPP 63


>gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]
          Length = 850

 Score = 33.1 bits (74), Expect = 0.97
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 509 LEAGRCLPKSDSSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSP 558
           LE GRC   SDSSSS  + + + S++  +  S      N+S I R +  P
Sbjct: 14  LEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPP 63


>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
          Length = 237

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 176 RVTPLPSLASPAVPAPG-----YCSRISRKSPGDPAKPASSPREWDPLHPSS 222
           R  P P LASPA   PG     +CS  +R+ P  P++PA  P    P  PS+
Sbjct: 68  REGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPP----PAPPSA 115


>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 176 RVTPLPSLASPAVPAPG-----YCSRISRKSPGDPAKPASSPREWDPLHPSS 222
           R  P P LASPA   PG     +CS  +R+ P  P++PA  P    P  PS+
Sbjct: 51  REGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPP----PAPPSA 98


>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 176 RVTPLPSLASPAVPAPG-----YCSRISRKSPGDPAKPASSPREWDPLHPSS 222
           R  P P LASPA   PG     +CS  +R+ P  P++PA  P    P  PS+
Sbjct: 59  REGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPP----PAPPSA 106


>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 176 RVTPLPSLASPAVPAPG-----YCSRISRKSPGDPAKPASSPREWDPLHPSS 222
           R  P P LASPA   PG     +CS  +R+ P  P++PA  P    P  PS+
Sbjct: 51  REGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPP----PAPPSA 98


>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 176 RVTPLPSLASPAVPAPG-----YCSRISRKSPGDPAKPASSPREWDPLHPSS 222
           R  P P LASPA   PG     +CS  +R+ P  P++PA  P    P  PS+
Sbjct: 59  REGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPP----PAPPSA 106


>gi|131888281 hypothetical protein LOC55216 isoform b [Homo sapiens]
          Length = 292

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 647 RKSLLGSTAIEAPSSTCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDN 706
           +KS   +T I A SS+  +      GTR  + P KR + S  +   +    L A     N
Sbjct: 170 KKSKKEATDITADSSSEFSEETGASGTRKGKQPHKRKKKSRKKSLKKPALFLEAES---N 226

Query: 707 TVRPGDQGSSSQPNSEERGENTSYRMEEK 735
           T    D  SSS   SEER    + R + +
Sbjct: 227 TSHSDDSASSSSEESEERDTKKTKRKKRE 255


>gi|131889432 hypothetical protein LOC55216 isoform a [Homo sapiens]
          Length = 293

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 647 RKSLLGSTAIEAPSSTCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDN 706
           +KS   +T I A SS+  +      GTR  + P KR + S  +   +    L A     N
Sbjct: 171 KKSKKEATDITADSSSEFSEETGASGTRKGKQPHKRKKKSRKKSLKKPALFLEAES---N 227

Query: 707 TVRPGDQGSSSQPNSEERGENTSYRMEEK 735
           T    D  SSS   SEER    + R + +
Sbjct: 228 TSHSDDSASSSSEESEERDTKKTKRKKRE 256


>gi|131889391 hypothetical protein LOC55216 isoform a [Homo sapiens]
          Length = 293

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 647 RKSLLGSTAIEAPSSTCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDN 706
           +KS   +T I A SS+  +      GTR  + P KR + S  +   +    L A     N
Sbjct: 171 KKSKKEATDITADSSSEFSEETGASGTRKGKQPHKRKKKSRKKSLKKPALFLEAES---N 227

Query: 707 TVRPGDQGSSSQPNSEERGENTSYRMEEK 735
           T    D  SSS   SEER    + R + +
Sbjct: 228 TSHSDDSASSSSEESEERDTKKTKRKKRE 256


>gi|46198301 hypothetical protein LOC79081 [Homo sapiens]
          Length = 263

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 68  GRLIKERNEGEIQDSSMK---PADRTDGS-VQAAAWGPELPSHRTVLGADSKSGEVDAT- 122
           G++ K      IQD S K   P+   + S V   +    LP    +L  D +  + +A  
Sbjct: 38  GKIGKVEGHQHIQDFSQKSHLPSIVVESSEVNEESGDLHLPHEELLLLTDGEEEDAEAFF 97

Query: 123 SDQEESVAWALAPAVPQSPLK 143
            DQ E   WA +P  P+SPL+
Sbjct: 98  QDQSEEPGWAWSPQDPRSPLR 118


>gi|24308394 hypothetical protein LOC140893 [Homo sapiens]
          Length = 664

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 166 CAGNRAGRDVRVTPLPSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDM 225
           C  +R   +    PLP+ +SP  P+P Y   +S  S    ++P++   E   L P    +
Sbjct: 232 CPADRGPANGTPPPLPARSSP--PSPAYERGLSLDSFLRASRPSAMTHEAPKLSPKVDRL 289

Query: 226 ALVPRNDSLSLQETSSS 242
            L+ R  SL LQ   SS
Sbjct: 290 CLLNRPLSLHLQSPHSS 306


>gi|145966685 TLX1 divergent [Homo sapiens]
          Length = 122

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 185 SPAVP-APGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSL 234
           +P +P AP  CS     +PG P  P +  +   P HPS T   LVPR+  L
Sbjct: 54  APTLPFAPDECSL----TPGSPPHPLNKQKHHPP-HPSQTQKDLVPRSPQL 99


>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
          Length = 5478

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 52/233 (22%), Positives = 80/233 (34%), Gaps = 48/233 (20%)

Query: 516  PKSDSSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRN 575
            P S  ++ LP +  T  +++   TS      +SSG    ++SP  T ++           
Sbjct: 3669 PGSTDTTLLPASTTTSGSSQESTTSH-----SSSGSTDTALSPGSTTAL----------- 3712

Query: 576  RYDEIKEEFDKLHQKYCLKSPGQMTVPLCIGVSTDKASMEVRYQTEGFLGK----LNP-- 629
                  +E    H      SPG     L    +T    +E   +     G     L+P  
Sbjct: 3713 ---SFGQESTTFHS-----SPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPAS 3764

Query: 630  --DPHFQG----FQKLPSSPLGCRKSLLGSTAIEAPSSTCVARAITRDGTRDHQFPAKRP 683
               P  QG    FQ  P+S                PS    A A   + T  H+ P   P
Sbjct: 3765 STSPGLQGESTAFQTHPAS------------THTTPSPPSTATAPVEESTTYHRSPGSTP 3812

Query: 684  RLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPNSEERGENTSYRMEEKS 736
                P  S   G+S  ++    +    G   SS+   +  RGE+T+ R+   S
Sbjct: 3813 TTHFPASSTTSGHSEKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGS 3865



 Score = 31.6 bits (70), Expect = 2.8
 Identities = 61/289 (21%), Positives = 94/289 (32%), Gaps = 40/289 (13%)

Query: 470  GPASPGGLQGLETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNP 529
            G  +  GL    T   S P S A   S +    +         R  P S  +++ P +  
Sbjct: 955  GSTTTPGLSERSTTFHSSPRSPATTLSPASTTSSGVSEESTTSRSRPGSTHTTAFPDSTT 1014

Query: 530  T----------HSATRPQQTSDLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDE 579
            T          HS+     T+ L     +SG  ++S +   +    D  +   G      
Sbjct: 1015 TPGLSRHSTTSHSSPGSTDTTLLPASTTTSGPSQESTTSHSSSGSTDTAL-SPGSTTALS 1073

Query: 580  IKEEFDKLHQKYCLKSPGQMTVPLCIGVSTDKASMEVRYQTEGFLGK----LNP----DP 631
              +E    H      +PG     L    +T    +E   +     G     L+P     P
Sbjct: 1074 FGQESTTFHS-----NPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSP 1128

Query: 632  HFQG----FQKLPSSPLGCRKSLLGSTAIEAPSSTCVARAITRDGTRDHQFPAKRPRLSE 687
              QG    FQ  P+S                PS    A A   + T  H+ P   P    
Sbjct: 1129 GLQGESTAFQTHPAS------------THTTPSPPSTATAPVEESTTYHRSPGSTPTTHF 1176

Query: 688  PQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPNSEERGENTSYRMEEKS 736
            P  S   G+S  ++    +    G   SS+   +  RGE+T+ R+   S
Sbjct: 1177 PASSTTSGHSEKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGS 1225



 Score = 30.4 bits (67), Expect = 6.3
 Identities = 21/78 (26%), Positives = 32/78 (41%)

Query: 659  PSSTCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQ 718
            PS    A A   + T  H+ P   P    P  S   G+S  ++    +    G   SS+ 
Sbjct: 2231 PSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIFHSSPDASGTTPSSAH 2290

Query: 719  PNSEERGENTSYRMEEKS 736
              +  RGE+T+ R+   S
Sbjct: 2291 STTSGRGESTTSRISPGS 2308



 Score = 30.4 bits (67), Expect = 6.3
 Identities = 21/78 (26%), Positives = 32/78 (41%)

Query: 659  PSSTCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQ 718
            PS    A A   + T  H+ P   P    P  S   G+S  ++    +    G   SS+ 
Sbjct: 2705 PSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIFHSSPDASGTTPSSAH 2764

Query: 719  PNSEERGENTSYRMEEKS 736
              +  RGE+T+ R+   S
Sbjct: 2765 STTSGRGESTTSRISPGS 2782


>gi|153945755 zinc finger protein 608 [Homo sapiens]
          Length = 1512

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 9/115 (7%)

Query: 515  LPKSDSSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGR 574
            L ++ + SS  KT+    +       D      S G+  K+ SPS  +S  D  V GH  
Sbjct: 922  LTQNGAESSAAKTSSPAYSDISDAADDGGSDSRSEGMRSKASSPSDIISSKDSVVKGHSS 981

Query: 575  N--RYDEIKEEFDKLHQKY------CLKSPGQMTVPLCIGVSTDKASMEVRYQTE 621
               +  ++KE     +  Y          PGQ+  P   G S     M+++ ++E
Sbjct: 982  TTAQSSQLKESHSPYYHSYDPYYSPSYMHPGQVGAP-AAGNSGSTQGMKIKKESE 1035


>gi|239752069 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 216

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 167 AGNRAGRDVRVTPLPSLASPAVPAPGYCSRISRKSPGDPA 206
           A ++A + +R TPL +   P    PG C+R  R+ P  PA
Sbjct: 130 AQSQASQLIRPTPLGTRERPLAAPPGNCARSRREGPSRPA 169


>gi|239746566 PREDICTED: hypothetical protein XP_002343789 [Homo
           sapiens]
          Length = 216

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 167 AGNRAGRDVRVTPLPSLASPAVPAPGYCSRISRKSPGDPA 206
           A ++A + +R TPL +   P    PG C+R  R+ P  PA
Sbjct: 130 AQSQASQLIRPTPLGTRERPLAAPPGNCARSRREGPSRPA 169


>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
          Length = 615

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 178 TPLPSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPS 221
           +P+P   SP  P P   S   R+SP  P+ P+  P+   P+ PS
Sbjct: 365 SPVPQRRSPVPPCP---SPQQRRSPASPSCPSPVPQRRSPVPPS 405


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.129    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,201,525
Number of Sequences: 37866
Number of extensions: 1683324
Number of successful extensions: 5566
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 5477
Number of HSP's gapped (non-prelim): 147
length of query: 748
length of database: 18,247,518
effective HSP length: 110
effective length of query: 638
effective length of database: 14,082,258
effective search space: 8984480604
effective search space used: 8984480604
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.