BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|83816964 Holliday junction recognition protein [Homo sapiens] (748 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|83816964 Holliday junction recognition protein [Homo sapiens] 1509 0.0 gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens] 41 0.004 gi|148806881 hypothetical protein LOC57608 [Homo sapiens] 38 0.039 gi|30795231 brain abundant, membrane attached signal protein 1 [... 37 0.067 gi|21493045 A-kinase anchor protein 6 [Homo sapiens] 37 0.067 gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 35 0.25 gi|239757559 PREDICTED: hypothetical protein [Homo sapiens] 35 0.33 gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 35 0.33 gi|115511036 alpha-kinase 3 [Homo sapiens] 35 0.33 gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 33 0.97 gi|7669528 neuregulin 2 isoform 2 [Homo sapiens] 33 0.97 gi|7669532 neuregulin 2 isoform 4 [Homo sapiens] 33 0.97 gi|7669530 neuregulin 2 isoform 3 [Homo sapiens] 33 0.97 gi|4758832 neuregulin 2 isoform 1 [Homo sapiens] 33 0.97 gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 33 1.3 gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 33 1.3 gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 33 1.3 gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 33 1.3 gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 33 1.3 gi|131888281 hypothetical protein LOC55216 isoform b [Homo sapiens] 33 1.3 gi|131889432 hypothetical protein LOC55216 isoform a [Homo sapiens] 33 1.3 gi|131889391 hypothetical protein LOC55216 isoform a [Homo sapiens] 33 1.3 gi|46198301 hypothetical protein LOC79081 [Homo sapiens] 33 1.3 gi|24308394 hypothetical protein LOC140893 [Homo sapiens] 33 1.3 gi|145966685 TLX1 divergent [Homo sapiens] 32 1.6 gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 32 1.6 gi|153945755 zinc finger protein 608 [Homo sapiens] 32 1.6 gi|239752069 PREDICTED: hypothetical protein [Homo sapiens] 32 2.2 gi|239746566 PREDICTED: hypothetical protein XP_002343789 [Homo ... 32 2.2 gi|7662302 TBK1 binding protein 1 [Homo sapiens] 32 2.2 >gi|83816964 Holliday junction recognition protein [Homo sapiens] Length = 748 Score = 1509 bits (3908), Expect = 0.0 Identities = 748/748 (100%), Positives = 748/748 (100%) Query: 1 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP 60 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP Sbjct: 1 MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETP 60 Query: 61 QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD 120 QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD Sbjct: 61 QGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVD 120 Query: 121 ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL 180 ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL Sbjct: 121 ATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPL 180 Query: 181 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS 240 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS Sbjct: 181 PSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETS 240 Query: 241 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR 300 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR Sbjct: 241 SSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHR 300 Query: 301 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL 360 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL Sbjct: 301 YKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFL 360 Query: 361 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP 420 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP Sbjct: 361 EVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRP 420 Query: 421 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL 480 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL Sbjct: 421 TIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGL 480 Query: 481 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS 540 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS Sbjct: 481 ETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTS 540 Query: 541 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT 600 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT Sbjct: 541 DLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMT 600 Query: 601 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS 660 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS Sbjct: 601 VPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPS 660 Query: 661 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN 720 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN Sbjct: 661 STCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPN 720 Query: 721 SEERGENTSYRMEEKSDFMLEKLETKSV 748 SEERGENTSYRMEEKSDFMLEKLETKSV Sbjct: 721 SEERGENTSYRMEEKSDFMLEKLETKSV 748 >gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens] Length = 739 Score = 41.2 bits (95), Expect = 0.004 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 9/115 (7%) Query: 137 VPQSPLKNELRRKYLTQVDIL----LQGAEYFECAGNRAGRDVRVTPLPS---LASPAVP 189 +P SP + ++ + + D+L GA AG+ G+ R P+P+ L + Sbjct: 259 IPASPSRTKIPAEKESHRDVLPDKPAPGAVNVPAAGSHLGQGKRAIPVPNKLGLKKTLLK 318 Query: 190 APGYCSRISRKSPGDPAKPASSPREWDPL--HPSSTDMALVPRNDSLSLQETSSS 242 APG S ++RKS P +S P S++ A +P N S L S S Sbjct: 319 APGSTSNLARKSSSGPVWSGASSACTSPAVGKAKSSEFASIPANSSRPLSNISKS 373 >gi|148806881 hypothetical protein LOC57608 [Homo sapiens] Length = 1359 Score = 37.7 bits (86), Expect = 0.039 Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 20/164 (12%) Query: 468 RGGPASPGGLQGLETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKT 527 +G P P + L + L P S+ +S+ E+ K E +S SSSS + Sbjct: 803 KGEPTGPCNSKQLFGQFLLKPVSRRPWDLISQ-LESFNKELQEE----EESSSSSSSSSS 857 Query: 528 NPTHSATRPQQTSDLHVQGNSSGIFRKS----VSPSKTLSVPDKEV--PGHGRNRYDEIK 581 + S PQQ + H + G S V P + VP+ V G G ++ + Sbjct: 858 SSEESEAEPQQENRAHCRQEDVGFRGNSPEMRVEPQPRMWVPESPVCRSGRGESKSESWS 917 Query: 582 EEFDKLHQKYCLKSPGQMTV------PLCI---GVSTDKASMEV 616 EE H + SPG+ V P C S +K +EV Sbjct: 918 EELQPGHPRAWPPSPGRFRVEEGGGAPFCSADGSTSAEKRHLEV 961 >gi|30795231 brain abundant, membrane attached signal protein 1 [Homo sapiens] Length = 227 Score = 37.0 bits (84), Expect = 0.067 Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 21/151 (13%) Query: 73 ERNEGEIQDSSMKPA------DRTDGSVQAAAWGPELPSHRTVLGADSKSGEVDATSDQE 126 E EGE ++ K ++T+G+ +A A P+ P + GE ++ Sbjct: 67 EEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQEQAAPGPAAGGEAPKAAEAA 126 Query: 127 ESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPLPSLASP 186 + A + APA + P K E K E A ++ + P AS Sbjct: 127 AAPAESAAPAAGEEPSKEEGEPKKT-------------EAPAAPAAQETKSDGAP--ASD 171 Query: 187 AVPAPGYCSRISRKSPGDPAKPASSPREWDP 217 + P + S+++P P+S+P+ P Sbjct: 172 SKPGSSEAAPSSKETPAATEAPSSTPKAQGP 202 >gi|21493045 A-kinase anchor protein 6 [Homo sapiens] Length = 2319 Score = 37.0 bits (84), Expect = 0.067 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 15/134 (11%) Query: 304 RMNKTYCKGAR-RSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFLE- 361 R+N Y + +R + + E PC P +GTG+ + KN + L +E Sbjct: 484 RLNDCYKEKSRLKKPHKTSEEVPPCRTPKRGTGSGKQAKNTKSSAVPNGELSYTSKAIEG 543 Query: 362 --VNRPQIHKLDP----SWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVK 415 N L+P SW + S+ SS F S+ ++ +N ++SPV Sbjct: 544 PQTNSASTSSLEPCNQRSWNAKLQLQSETSSSPAFTQSSESSVGSDN-------IMSPVP 596 Query: 416 IVSRPTIRQGHGEN 429 ++S+ ++G + Sbjct: 597 LLSKHKSKKGQASS 610 >gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] Length = 1312 Score = 35.0 bits (79), Expect = 0.25 Identities = 46/174 (26%), Positives = 66/174 (37%), Gaps = 26/174 (14%) Query: 60 PQGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGP------ELPSHRTVLGAD 113 P I G +++ E + S +P R AA+ P + P+ R G D Sbjct: 386 PGDSEIEEGEIVQPEEEPRLALSLFRPGGRAARPTPAASATPTAQPLPQPPAPRAPEGDD 445 Query: 114 SKSGEVDATSDQEESVAWALAPAVPQSPLKN------ELRRKYLTQVDILLQGAEYFECA 167 S + A SD E ++ L P P + +LRRK LTQ + Y + Sbjct: 446 FLS--LHAESDGEGALQVDLGEPAPAPPAADSRWGGLDLRRKILTQ-----RRERYRQ-- 496 Query: 168 GNRAGRDVRVTPLPSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPS 221 R P P+ A+ A P SR RK G+ + ASS P P+ Sbjct: 497 -----RSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPA 545 Score = 30.4 bits (67), Expect = 6.3 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 9/52 (17%) Query: 178 TPLPSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVP 229 +P PS +SP+ P P P PA PA +DP HP TD A P Sbjct: 198 SPSPSSSSPSPPPPP-------PPPAPPAPPAPRFDIYDPFHP--TDEAYSP 240 >gi|239757559 PREDICTED: hypothetical protein [Homo sapiens] Length = 196 Score = 34.7 bits (78), Expect = 0.33 Identities = 16/46 (34%), Positives = 25/46 (54%) Query: 167 AGNRAGRDVRVTPLPSLASPAVPAPGYCSRISRKSPGDPAKPASSP 212 A ++A + +R TPL + P PG C+R R+ P PA ++P Sbjct: 130 AQSQASQLIRPTPLGTRERPLAAPPGNCARSRREGPSRPAPTGAAP 175 >gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo sapiens] Length = 4911 Score = 34.7 bits (78), Expect = 0.33 Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 16/142 (11%) Query: 128 SVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRA----GRDVRVTPLPSL 183 SV ++ PA P+ + R +T+ ++ + + A NR G VR P Sbjct: 2215 SVPYSQPPATPRPRISEGFTRSSMTRPVLMPNQDPFLQAAQNRGPALPGPLVR-PPDTCS 2273 Query: 184 ASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETSSSS 243 +P P PG SR SP A P + P+ P S ++DS +T+ Sbjct: 2274 QTPRPPGPGLSDTFSRVSP----SAARDPYDQSPMTPRS-------QSDSFGTSQTAHDV 2322 Query: 244 FLSSQPFEDDDICNVTISDLYA 265 +P + C + S +++ Sbjct: 2323 ADQPRPGSEGSFCASSNSPMHS 2344 >gi|115511036 alpha-kinase 3 [Homo sapiens] Length = 1907 Score = 34.7 bits (78), Expect = 0.33 Identities = 53/232 (22%), Positives = 73/232 (31%), Gaps = 39/232 (16%) Query: 483 RRLSLPSSKAKAKSLSEAFENLGKRSLEAG--------RCLPKSDSSSSLPKTNPTHSAT 534 R L S K K E+ + L K LE C+P SD S P Sbjct: 508 RALKEESGAKKKKKDEESKQGLRKPELEKAAQSRRSSENCIPSSDEPDSCGTQGPVGVEQ 567 Query: 535 RPQQTSDLHVQGNSSGIFRKSVSPSKTLSVPDKEV----PGHGRNRYDEIKEEF-DKLHQ 589 Q +G S + P+ + PDK PG G+ Y +K+ + + Sbjct: 568 VQTQPRGRAARGPGSSGTDSTRKPASAVGTPDKAQKAPGPGPGQEVYFSLKDMYLENTQA 627 Query: 590 KYCLKSPGQMTVPLCIGVSTDKASMEVRYQTEGFLG-------KLNPDP--HFQGFQKLP 640 L G T+ + + K +R ++EG G L P P F + P Sbjct: 628 VRPLGEEGPQTLSVRAPGESPKGKAPLRARSEGVPGAPGQPTHSLTPQPTRPFNRKRFAP 687 Query: 641 SSPLG-----------------CRKSLLGSTAIEAPSSTCVARAITRDGTRD 675 P G C LG +A A R GTRD Sbjct: 688 PKPKGEATTDSKPISSLSQAPECGAQSLGKAPPQASVQVPTPPARRRHGTRD 739 >gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] Length = 1860 Score = 33.1 bits (74), Expect = 0.97 Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 18/83 (21%) Query: 185 SPAVPAPGYCSRISRKSPGDPAK----PASSPREWDPLHP--SSTDMAL-------VPRN 231 +PAVP PG S+K G A P SSPR+ PL P ++ D+ L PR Sbjct: 520 APAVPTPGSAPTGSKKPIGSEASKKAGPKSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQ 579 Query: 232 DSLSLQET-----SSSSFLSSQP 249 S Q T + + FLSS P Sbjct: 580 PQPSQQTTPALVLAPAQFLSSSP 602 >gi|7669528 neuregulin 2 isoform 2 [Homo sapiens] Length = 844 Score = 33.1 bits (74), Expect = 0.97 Identities = 18/50 (36%), Positives = 26/50 (52%) Query: 509 LEAGRCLPKSDSSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSP 558 LE GRC SDSSSS + + + S++ + S N+S I R + P Sbjct: 14 LEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPP 63 >gi|7669532 neuregulin 2 isoform 4 [Homo sapiens] Length = 852 Score = 33.1 bits (74), Expect = 0.97 Identities = 18/50 (36%), Positives = 26/50 (52%) Query: 509 LEAGRCLPKSDSSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSP 558 LE GRC SDSSSS + + + S++ + S N+S I R + P Sbjct: 14 LEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPP 63 >gi|7669530 neuregulin 2 isoform 3 [Homo sapiens] Length = 858 Score = 33.1 bits (74), Expect = 0.97 Identities = 18/50 (36%), Positives = 26/50 (52%) Query: 509 LEAGRCLPKSDSSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSP 558 LE GRC SDSSSS + + + S++ + S N+S I R + P Sbjct: 14 LEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPP 63 >gi|4758832 neuregulin 2 isoform 1 [Homo sapiens] Length = 850 Score = 33.1 bits (74), Expect = 0.97 Identities = 18/50 (36%), Positives = 26/50 (52%) Query: 509 LEAGRCLPKSDSSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSP 558 LE GRC SDSSSS + + + S++ + S N+S I R + P Sbjct: 14 LEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPP 63 >gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] Length = 237 Score = 32.7 bits (73), Expect = 1.3 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%) Query: 176 RVTPLPSLASPAVPAPG-----YCSRISRKSPGDPAKPASSPREWDPLHPSS 222 R P P LASPA PG +CS +R+ P P++PA P P PS+ Sbjct: 68 REGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPP----PAPPSA 115 >gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo sapiens] Length = 220 Score = 32.7 bits (73), Expect = 1.3 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%) Query: 176 RVTPLPSLASPAVPAPG-----YCSRISRKSPGDPAKPASSPREWDPLHPSS 222 R P P LASPA PG +CS +R+ P P++PA P P PS+ Sbjct: 51 REGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPP----PAPPSA 98 >gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo sapiens] Length = 228 Score = 32.7 bits (73), Expect = 1.3 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%) Query: 176 RVTPLPSLASPAVPAPG-----YCSRISRKSPGDPAKPASSPREWDPLHPSS 222 R P P LASPA PG +CS +R+ P P++PA P P PS+ Sbjct: 59 REGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPP----PAPPSA 106 >gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo sapiens] Length = 220 Score = 32.7 bits (73), Expect = 1.3 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%) Query: 176 RVTPLPSLASPAVPAPG-----YCSRISRKSPGDPAKPASSPREWDPLHPSS 222 R P P LASPA PG +CS +R+ P P++PA P P PS+ Sbjct: 51 REGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPP----PAPPSA 98 >gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo sapiens] Length = 228 Score = 32.7 bits (73), Expect = 1.3 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%) Query: 176 RVTPLPSLASPAVPAPG-----YCSRISRKSPGDPAKPASSPREWDPLHPSS 222 R P P LASPA PG +CS +R+ P P++PA P P PS+ Sbjct: 59 REGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPP----PAPPSA 106 >gi|131888281 hypothetical protein LOC55216 isoform b [Homo sapiens] Length = 292 Score = 32.7 bits (73), Expect = 1.3 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Query: 647 RKSLLGSTAIEAPSSTCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDN 706 +KS +T I A SS+ + GTR + P KR + S + + L A N Sbjct: 170 KKSKKEATDITADSSSEFSEETGASGTRKGKQPHKRKKKSRKKSLKKPALFLEAES---N 226 Query: 707 TVRPGDQGSSSQPNSEERGENTSYRMEEK 735 T D SSS SEER + R + + Sbjct: 227 TSHSDDSASSSSEESEERDTKKTKRKKRE 255 >gi|131889432 hypothetical protein LOC55216 isoform a [Homo sapiens] Length = 293 Score = 32.7 bits (73), Expect = 1.3 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Query: 647 RKSLLGSTAIEAPSSTCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDN 706 +KS +T I A SS+ + GTR + P KR + S + + L A N Sbjct: 171 KKSKKEATDITADSSSEFSEETGASGTRKGKQPHKRKKKSRKKSLKKPALFLEAES---N 227 Query: 707 TVRPGDQGSSSQPNSEERGENTSYRMEEK 735 T D SSS SEER + R + + Sbjct: 228 TSHSDDSASSSSEESEERDTKKTKRKKRE 256 >gi|131889391 hypothetical protein LOC55216 isoform a [Homo sapiens] Length = 293 Score = 32.7 bits (73), Expect = 1.3 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Query: 647 RKSLLGSTAIEAPSSTCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDN 706 +KS +T I A SS+ + GTR + P KR + S + + L A N Sbjct: 171 KKSKKEATDITADSSSEFSEETGASGTRKGKQPHKRKKKSRKKSLKKPALFLEAES---N 227 Query: 707 TVRPGDQGSSSQPNSEERGENTSYRMEEK 735 T D SSS SEER + R + + Sbjct: 228 TSHSDDSASSSSEESEERDTKKTKRKKRE 256 >gi|46198301 hypothetical protein LOC79081 [Homo sapiens] Length = 263 Score = 32.7 bits (73), Expect = 1.3 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 5/81 (6%) Query: 68 GRLIKERNEGEIQDSSMK---PADRTDGS-VQAAAWGPELPSHRTVLGADSKSGEVDAT- 122 G++ K IQD S K P+ + S V + LP +L D + + +A Sbjct: 38 GKIGKVEGHQHIQDFSQKSHLPSIVVESSEVNEESGDLHLPHEELLLLTDGEEEDAEAFF 97 Query: 123 SDQEESVAWALAPAVPQSPLK 143 DQ E WA +P P+SPL+ Sbjct: 98 QDQSEEPGWAWSPQDPRSPLR 118 >gi|24308394 hypothetical protein LOC140893 [Homo sapiens] Length = 664 Score = 32.7 bits (73), Expect = 1.3 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 166 CAGNRAGRDVRVTPLPSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDM 225 C +R + PLP+ +SP P+P Y +S S ++P++ E L P + Sbjct: 232 CPADRGPANGTPPPLPARSSP--PSPAYERGLSLDSFLRASRPSAMTHEAPKLSPKVDRL 289 Query: 226 ALVPRNDSLSLQETSSS 242 L+ R SL LQ SS Sbjct: 290 CLLNRPLSLHLQSPHSS 306 >gi|145966685 TLX1 divergent [Homo sapiens] Length = 122 Score = 32.3 bits (72), Expect = 1.6 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 6/51 (11%) Query: 185 SPAVP-APGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSL 234 +P +P AP CS +PG P P + + P HPS T LVPR+ L Sbjct: 54 APTLPFAPDECSL----TPGSPPHPLNKQKHHPP-HPSQTQKDLVPRSPQL 99 >gi|239743293 PREDICTED: mucin 12 [Homo sapiens] Length = 5478 Score = 32.3 bits (72), Expect = 1.6 Identities = 52/233 (22%), Positives = 80/233 (34%), Gaps = 48/233 (20%) Query: 516 PKSDSSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRN 575 P S ++ LP + T +++ TS +SSG ++SP T ++ Sbjct: 3669 PGSTDTTLLPASTTTSGSSQESTTSH-----SSSGSTDTALSPGSTTAL----------- 3712 Query: 576 RYDEIKEEFDKLHQKYCLKSPGQMTVPLCIGVSTDKASMEVRYQTEGFLGK----LNP-- 629 +E H SPG L +T +E + G L+P Sbjct: 3713 ---SFGQESTTFHS-----SPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPAS 3764 Query: 630 --DPHFQG----FQKLPSSPLGCRKSLLGSTAIEAPSSTCVARAITRDGTRDHQFPAKRP 683 P QG FQ P+S PS A A + T H+ P P Sbjct: 3765 STSPGLQGESTAFQTHPAS------------THTTPSPPSTATAPVEESTTYHRSPGSTP 3812 Query: 684 RLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPNSEERGENTSYRMEEKS 736 P S G+S ++ + G SS+ + RGE+T+ R+ S Sbjct: 3813 TTHFPASSTTSGHSEKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGS 3865 Score = 31.6 bits (70), Expect = 2.8 Identities = 61/289 (21%), Positives = 94/289 (32%), Gaps = 40/289 (13%) Query: 470 GPASPGGLQGLETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNP 529 G + GL T S P S A S + + R P S +++ P + Sbjct: 955 GSTTTPGLSERSTTFHSSPRSPATTLSPASTTSSGVSEESTTSRSRPGSTHTTAFPDSTT 1014 Query: 530 T----------HSATRPQQTSDLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDE 579 T HS+ T+ L +SG ++S + + D + G Sbjct: 1015 TPGLSRHSTTSHSSPGSTDTTLLPASTTTSGPSQESTTSHSSSGSTDTAL-SPGSTTALS 1073 Query: 580 IKEEFDKLHQKYCLKSPGQMTVPLCIGVSTDKASMEVRYQTEGFLGK----LNP----DP 631 +E H +PG L +T +E + G L+P P Sbjct: 1074 FGQESTTFHS-----NPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSP 1128 Query: 632 HFQG----FQKLPSSPLGCRKSLLGSTAIEAPSSTCVARAITRDGTRDHQFPAKRPRLSE 687 QG FQ P+S PS A A + T H+ P P Sbjct: 1129 GLQGESTAFQTHPAS------------THTTPSPPSTATAPVEESTTYHRSPGSTPTTHF 1176 Query: 688 PQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPNSEERGENTSYRMEEKS 736 P S G+S ++ + G SS+ + RGE+T+ R+ S Sbjct: 1177 PASSTTSGHSEKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGS 1225 Score = 30.4 bits (67), Expect = 6.3 Identities = 21/78 (26%), Positives = 32/78 (41%) Query: 659 PSSTCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQ 718 PS A A + T H+ P P P S G+S ++ + G SS+ Sbjct: 2231 PSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIFHSSPDASGTTPSSAH 2290 Query: 719 PNSEERGENTSYRMEEKS 736 + RGE+T+ R+ S Sbjct: 2291 STTSGRGESTTSRISPGS 2308 Score = 30.4 bits (67), Expect = 6.3 Identities = 21/78 (26%), Positives = 32/78 (41%) Query: 659 PSSTCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQ 718 PS A A + T H+ P P P S G+S ++ + G SS+ Sbjct: 2705 PSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIFHSSPDASGTTPSSAH 2764 Query: 719 PNSEERGENTSYRMEEKS 736 + RGE+T+ R+ S Sbjct: 2765 STTSGRGESTTSRISPGS 2782 >gi|153945755 zinc finger protein 608 [Homo sapiens] Length = 1512 Score = 32.3 bits (72), Expect = 1.6 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 9/115 (7%) Query: 515 LPKSDSSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGR 574 L ++ + SS KT+ + D S G+ K+ SPS +S D V GH Sbjct: 922 LTQNGAESSAAKTSSPAYSDISDAADDGGSDSRSEGMRSKASSPSDIISSKDSVVKGHSS 981 Query: 575 N--RYDEIKEEFDKLHQKY------CLKSPGQMTVPLCIGVSTDKASMEVRYQTE 621 + ++KE + Y PGQ+ P G S M+++ ++E Sbjct: 982 TTAQSSQLKESHSPYYHSYDPYYSPSYMHPGQVGAP-AAGNSGSTQGMKIKKESE 1035 >gi|239752069 PREDICTED: hypothetical protein [Homo sapiens] Length = 216 Score = 32.0 bits (71), Expect = 2.2 Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 167 AGNRAGRDVRVTPLPSLASPAVPAPGYCSRISRKSPGDPA 206 A ++A + +R TPL + P PG C+R R+ P PA Sbjct: 130 AQSQASQLIRPTPLGTRERPLAAPPGNCARSRREGPSRPA 169 >gi|239746566 PREDICTED: hypothetical protein XP_002343789 [Homo sapiens] Length = 216 Score = 32.0 bits (71), Expect = 2.2 Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 167 AGNRAGRDVRVTPLPSLASPAVPAPGYCSRISRKSPGDPA 206 A ++A + +R TPL + P PG C+R R+ P PA Sbjct: 130 AQSQASQLIRPTPLGTRERPLAAPPGNCARSRREGPSRPA 169 >gi|7662302 TBK1 binding protein 1 [Homo sapiens] Length = 615 Score = 32.0 bits (71), Expect = 2.2 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Query: 178 TPLPSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPS 221 +P+P SP P P S R+SP P+ P+ P+ P+ PS Sbjct: 365 SPVPQRRSPVPPCP---SPQQRRSPASPSCPSPVPQRRSPVPPS 405 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.313 0.129 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,201,525 Number of Sequences: 37866 Number of extensions: 1683324 Number of successful extensions: 5566 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 57 Number of HSP's that attempted gapping in prelim test: 5477 Number of HSP's gapped (non-prelim): 147 length of query: 748 length of database: 18,247,518 effective HSP length: 110 effective length of query: 638 effective length of database: 14,082,258 effective search space: 8984480604 effective search space used: 8984480604 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.