Guide to the Human Genome
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Name: C11orf57 Sequence: fasta or formatted (293aa) NCBI GI: 131889432
Description:

hypothetical protein LOC55216 isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {292aa} hypothetical protein LOC55216 isoform b
alt mRNA {293aa} hypothetical protein LOC55216 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         14           1
 C cysteine            0.0          0           0
 D aspartate           6.8         20           2
 E glutamate          10.6         31           2
 F phenylalanine       2.0          6           1
 G glycine             3.4         10           1
 H histidine           3.4         10           1
 I isoleucine          2.7          8           1
 K lysine             17.1         50           3
 L leucine             3.8         11           2
 M methionine          2.0          6           1
 N asparagine          3.8         11           2
 P proline             2.7          8           1
 Q glutamine           3.4         10           2
 R arginine            7.5         22           1
 S serine             14.0         41           4
 T threonine           6.1         18           1
 V valine              1.7          5           1
 W tryptophan          1.7          5           1
 Y tyrosine            2.4          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55216 isoform a 
C11orf57              1.000   hypothetical protein LOC55216 isoform a 
C11orf57              0.989   hypothetical protein LOC55216 isoform b 
NKAP                  0.087   NFKB activating protein 
CYLC1                 0.080   cylicin, basic protein of sperm head cytoskeleton 1...
FAM133A               0.072   hypothetical protein LOC286499 
NKAPL                 0.071   NFKB activating protein-like 
FAM133B               0.064   hypothetical protein LOC257415 isoform 2 
FAM133B               0.064   hypothetical protein LOC257415 isoform 1 
CYLC2                 0.057   cylicin 2 
LOC100133599          0.053   PREDICTED: hypothetical protein 
LOC100133599          0.053   PREDICTED: hypothetical protein 
PRPF40A               0.051   formin binding protein 3 
CIR1                  0.051   CBF1 interacting corepressor 
LOC100294088          0.051   PREDICTED: hypothetical protein, partial 
NOLC1                 0.051   nucleolar and coiled-body phosphoprotein 1 
RSRC2                 0.051   arginine/serine-rich coiled-coil 2 isoform a 
PPIG                  0.049   peptidylprolyl isomerase G 
ARL6IP4               0.049   SRp25 nuclear protein isoform 1 
SFRS12                0.049   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.049   splicing factor, arginine/serine-rich 12 isoform b [...
LOC645202             0.048   PREDICTED: hypothetical protein LOC645202 
SON                   0.048   SON DNA-binding protein isoform F 
SON                   0.048   SON DNA-binding protein isoform B 
ATRX                  0.046   transcriptional regulator ATRX isoform 2 
ATRX                  0.046   transcriptional regulator ATRX isoform 1 
TTC14                 0.046   tetratricopeptide repeat domain 14 isoform a 
ARL6IP4               0.046   SRp25 nuclear protein isoform 3 
TRDN                  0.046   triadin 
PRPF38B               0.046   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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