Guide to the Human Genome
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Name: SLCO2A1 Sequence: fasta or formatted (643aa) NCBI GI: 188528663
Description:

solute carrier organic anion transporter family, member 2A1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         54           3
 C cysteine            3.7         24           1
 D aspartate           2.3         15           2
 E glutamate           2.3         15           2
 F phenylalanine       6.2         40           4
 G glycine             7.5         48           2
 H histidine           1.6         10           1
 I isoleucine          7.0         45           2
 K lysine              3.4         22           2
 L leucine            13.1         84           3
 M methionine          2.5         16           2
 N asparagine          3.6         23           2
 P proline             5.6         36           2
 Q glutamine           3.4         22           1
 R arginine            4.4         28           2
 S serine             10.7         69           5
 T threonine           4.2         27           2
 V valine              5.6         36           2
 W tryptophan          1.2          8           2
 Y tyrosine            3.3         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier organic anion transporter family, me... 
SLCO2B1               0.403   solute carrier organic anion transporter family, me...
SLCO2B1               0.403   solute carrier organic anion transporter family, memb...
SLCO3A1               0.306   solute carrier organic anion transporter family, me...
SLCO3A1               0.306   solute carrier organic anion transporter family, me...
SLCO2B1               0.300   solute carrier organic anion transporter family, me...
SLCO1C1               0.284   solute carrier organic anion transporter family, memb...
SLCO1C1               0.274   solute carrier organic anion transporter family, me...
SLCO1A2               0.272   organic anion transporting polypeptide A 
SLCO1A2               0.272   organic anion transporting polypeptide A 
SLCO1B3               0.263   solute carrier organic anion transporter family, memb...
SLCO1B1               0.259   solute carrier organic anion transporter family, me...
SLCO5A1               0.249   solute carrier organic anion transporter family, me...
LST-3TM12             0.248   liver-specific organic anion transporter 3TM12 [Hom...
SLCO1C1               0.240   solute carrier organic anion transporter family, me...
SLCO4C1               0.231   solute carrier organic anion transporter family, mem...
SLCO4A1               0.225   solute carrier organic anion transporter family memb...
SLCO1C1               0.222   solute carrier organic anion transporter family, me...
SLCO5A1               0.211   solute carrier organic anion transporter family, me...
SLCO5A1               0.194   solute carrier organic anion transporter family, me...
SLCO6A1               0.149   solute carrier organic anion transporter family, mem...
SPINK7                0.008   esophagus cancer-related gene-2 
FST                   0.008   follistatin isoform FST317 precursor 
FST                   0.008   follistatin isoform FST344 precursor 
MEGF10                0.007   multiple EGF-like-domains 10 
SPNS2                 0.006   spinster homolog 2 
AGRN                  0.006   agrin 
RECK                  0.006   RECK protein precursor 
MEGF8                 0.006   multiple EGF-like-domains 8 
MEGF11                0.006   multiple EGF-like-domains 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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