Guide to the Human Genome
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Name: CSF3 Sequence: fasta or formatted (207aa) NCBI GI: 4503079
Description:

colony stimulating factor 3 isoform a precursor

Referenced in:

Interleukins and Their Receptors
Neutrophils, Eosinophils, and Basophils
Hematopoiesis and Erythrocytes

Other entries for this name:
alt prot [204aa] colony stimulating factor 3 isoform b precursor
alt prot [200aa] colony stimulating factor 3 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         24           2
 C cysteine            2.4          5           1
 D aspartate           1.9          4           1
 E glutamate           5.3         11           2
 F phenylalanine       2.9          6           1
 G glycine             7.2         15           2
 H histidine           2.9          6           1
 I isoleucine          1.9          4           1
 K lysine              2.4          5           1
 L leucine            18.8         39           3
 M methionine          2.9          6           1
 N asparagine          0.0          0           0
 P proline             7.2         15           1
 Q glutamine           9.7         20           2
 R arginine            2.4          5           2
 S serine              8.2         17           2
 T threonine           4.3          9           2
 V valine              4.3          9           1
 W tryptophan          1.9          4           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   colony stimulating factor 3 isoform a precursor [Homo... 
CSF3                  0.974   colony stimulating factor 3 isoform b precursor [Hom...
CSF3                  0.910   colony stimulating factor 3 isoform c 
LOC100292068          0.015   PREDICTED: hypothetical protein XP_002344730 
LOC100290792          0.015   PREDICTED: hypothetical protein XP_002347415 
LOC100287305          0.015   PREDICTED: hypothetical protein XP_002343200 
ENO3                  0.013   enolase 3 
ENO3                  0.013   enolase 3 
IL23A                 0.013   interleukin 23, alpha subunit p19 precursor 
KIFC1                 0.010   kinesin family member C1 
DST                   0.010   dystonin isoform 4 
DST                   0.010   dystonin isoform 3 
DST                   0.010   dystonin isoform 2 
DST                   0.010   dystonin isoform 1 
DST                   0.010   dystonin isoform 1eA precursor 
GGPS1                 0.010   geranylgeranyl diphosphate synthase 1 isoform B [Hom...
GGPS1                 0.010   geranylgeranyl diphosphate synthase 1 isoform A [Hom...
GGPS1                 0.010   geranylgeranyl diphosphate synthase 1 isoform A [Homo...
PUS7                  0.008   pseudouridylate synthase 7 homolog 
MDFI                  0.008   MyoD family inhibitor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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