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Search of human proteins with 83582794
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|83582794 beta-defensin 110 [Homo sapiens]
(62 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|83582794 beta-defensin 110 [Homo sapiens] 142 4e-35
gi|82734214 beta-defensin 111 [Homo sapiens] 63 4e-11
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 42 1e-04
gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 41 2e-04
gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 41 2e-04
gi|50344744 beta-defensin 108B [Homo sapiens] 40 3e-04
gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens] 40 4e-04
gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens] 40 4e-04
gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens] 40 4e-04
gi|82734217 beta-defensin 112 [Homo sapiens] 38 0.002
gi|83582796 beta-defensin 113 [Homo sapiens] 37 0.003
gi|17402931 sperm associated antigen 11B isoform C preproprotein... 35 0.013
gi|22748611 defensin, beta 106A precursor [Homo sapiens] 32 0.11
gi|103485143 defensin, beta 106B precursor [Homo sapiens] 32 0.11
gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo ... 30 0.32
gi|82734219 beta-defensin 114 [Homo sapiens] 30 0.42
gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo ... 28 1.2
gi|74136827 beta-defensin 134 [Homo sapiens] 28 1.6
gi|82734223 beta-defensin 124 [Homo sapiens] 28 1.6
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 28 1.6
gi|126116565 MYC binding protein 2 [Homo sapiens] 28 2.1
gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] 27 2.7
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 26 7.9
gi|126091070 sperm associated antigen 11B isoform E precursor [H... 26 7.9
gi|58865339 defensin, beta 121 [Homo sapiens] 26 7.9
>gi|83582794 beta-defensin 110 [Homo sapiens]
Length = 62
Score = 142 bits (359), Expect = 4e-35
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 1 MKIQLFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQC 60
MKIQLFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQC
Sbjct: 1 MKIQLFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQC 60
Query: 61 CV 62
CV
Sbjct: 61 CV 62
>gi|82734214 beta-defensin 111 [Homo sapiens]
Length = 67
Score = 63.2 bits (152), Expect = 4e-11
Identities = 32/66 (48%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 1 MKIQLFFFILHFWVTILPARSNFEPKYRF----ERCEKVRGICKTFCDDVEYDYGYCIKW 56
MKIQLFFFILHFWVTILPA+ + P+Y C G CK C + E YCI+
Sbjct: 1 MKIQLFFFILHFWVTILPAKKKY-PEYGSLDLRRECRIGNGQCKNQCHENEIRIAYCIRP 59
Query: 57 RSQCCV 62
+ CC+
Sbjct: 60 GTHCCL 65
>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 73
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 1 MKIQLFFFILHFWVT-ILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQ 59
M+I + F + F+++ +LPAR F+ E CE+ G C+ FC + E G C+ R
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFK-----EICERPNGSCRDFCLETEIHVGRCLNSR-P 54
Query: 60 CCV 62
CC+
Sbjct: 55 CCL 57
>gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 41.2 bits (95), Expect = 2e-04
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 5 LFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62
L F I F +LPAR F+ E CE+ G C+ FC + E G C+ R CC+
Sbjct: 16 LLFAIFFFMSQVLPARGKFK-----EICERPNGSCRDFCLETEIHVGRCLNSR-PCCL 67
>gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 41.2 bits (95), Expect = 2e-04
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 5 LFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62
L F I F +LPAR F+ E CE+ G C+ FC + E G C+ R CC+
Sbjct: 16 LLFAIFFFMSQVLPARGKFK-----EICERPNGSCRDFCLETEIHVGRCLNSR-PCCL 67
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 40.4 bits (93), Expect = 3e-04
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 1 MKIQLFFFILHFWVT-ILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQ 59
M+I + F + F+++ +LPAR F+ E CE+ G C+ FC + E G C+
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFK-----EICERPNGSCRDFCLETEIHVGRCLN-SQP 54
Query: 60 CCV 62
CC+
Sbjct: 55 CCL 57
>gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]
Length = 61
Score = 40.0 bits (92), Expect = 4e-04
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 1 MKIQLFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQC 60
MKI +F F+L F++ + R K + C +RG C+ C D E G+C K + C
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYS-CFIMRGKCRHECHDFEKPIGFCTKLNANC 59
>gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]
Length = 61
Score = 40.0 bits (92), Expect = 4e-04
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 1 MKIQLFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQC 60
MKI +F F+L F++ + R K + C +RG C+ C D E G+C K + C
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYS-CFIMRGKCRHECHDFEKPIGFCTKLNANC 59
>gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]
Length = 61
Score = 40.0 bits (92), Expect = 4e-04
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 1 MKIQLFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQC 60
MKI +F F+L F++ + R K + C +RG C+ C D E G+C K + C
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYS-CFIMRGKCRHECHDFEKPIGFCTKLNANC 59
>gi|82734217 beta-defensin 112 [Homo sapiens]
Length = 113
Score = 38.1 bits (87), Expect = 0.002
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 28 RFERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62
R++ C + G CK CDD E+ YC + + CCV
Sbjct: 50 RWKSCTAIGGRCKNQCDDSEFRISYCARPTTHCCV 84
>gi|83582796 beta-defensin 113 [Homo sapiens]
Length = 82
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 1 MKIQLFFFILHFWVTI---LPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYC 53
MKI F F V+ +P + E R C+ VRG CK C+ EY Y YC
Sbjct: 1 MKILCIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPECNSWEYVYYYC 56
>gi|17402931 sperm associated antigen 11B isoform C preproprotein
[Homo sapiens]
Length = 113
Score = 35.0 bits (79), Expect = 0.013
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 32 CEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62
C + G C+ +C+ +E GYC K + CC+
Sbjct: 82 CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
Length = 65
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 1 MKIQLFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQC 60
M+ LF F + F++T PA++ F E+C K++G CK C E C K +C
Sbjct: 1 MRTFLFLFAVLFFLT--PAKNAFFD----EKCNKLKGTCKNNCGKNEELIALCQK-SLKC 53
Query: 61 C 61
C
Sbjct: 54 C 54
>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
Length = 65
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 1 MKIQLFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQC 60
M+ LF F + F++T PA++ F E+C K++G CK C E C K +C
Sbjct: 1 MRTFLFLFAVLFFLT--PAKNAFFD----EKCNKLKGTCKNNCGKNEELIALCQK-SLKC 53
Query: 61 C 61
C
Sbjct: 54 C 54
>gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo
sapiens]
Length = 111
Score = 30.4 bits (67), Expect = 0.32
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 30 ERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62
E CE+ G C+ FC + E G C+ R CC+
Sbjct: 64 EICERPNGSCQDFCLETEIHVGRCLNSR-PCCL 95
>gi|82734219 beta-defensin 114 [Homo sapiens]
Length = 69
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 7 FFILHF--WVT-ILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQCC 61
F+ LHF +VT ILPA +RC K G CK C + E C R CC
Sbjct: 4 FYYLHFLCYVTFILPATCTL---VNADRCTKRYGRCKRDCLESEKQIDICSLPRKICC 58
>gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo
sapiens]
Length = 87
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 5 LFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKT-FCDDVEYDYGYCIKWRSQCC 61
L +L F + + P R P C + G+C+T C+ VE G C + R +CC
Sbjct: 6 LLLILLLFSILLSPVRGGLGPAEG--HCLNLFGVCRTDVCNIVEDQIGAC-RRRMKCC 60
>gi|74136827 beta-defensin 134 [Homo sapiens]
Length = 66
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 7 FFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62
F L W +L ++ + ++C K GIC+ C + E YC+ ++ +CCV
Sbjct: 8 FVFLFLWDPVLAGINSLSSEMH-KKCYK-NGICRLECYESEMLVAYCM-FQLECCV 60
>gi|82734223 beta-defensin 124 [Homo sapiens]
Length = 71
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 9 ILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62
+L F V +L + F+RC K +G C+T+C E Y + S CC+
Sbjct: 4 LLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQE-TYMHLCPDASLCCL 56
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 30 ERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62
+RC + G C+ C E Y YCI CCV
Sbjct: 23 QRCWNLYGKCRYRCSKKERVYVYCIN-NKMCCV 54
>gi|126116565 MYC binding protein 2 [Homo sapiens]
Length = 4640
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 14 VTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYD---YGYCI 54
+ ++PA + P ++ KV G CKTF D + D +G C+
Sbjct: 1049 IGLVPASISEPPPFKCLLINKVDGSCKTFNDSEQEDLQGFGVCL 1092
>gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens]
Length = 84
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 9 ILHFWVTILPARSN--FEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62
+L+ ++ IL A K RC GIC+ C E Y YC +S CC+
Sbjct: 3 LLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQS-CCL 57
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 21 SNFEPKYRFERCEKVRGICKTFCDDVEYDY 50
SN E ++ F R + VR + TF D+E ++
Sbjct: 1211 SNQEHQWLFSRLQDVRDVSATFLSDLEENF 1240
>gi|126091070 sperm associated antigen 11B isoform E precursor
[Homo sapiens]
Length = 80
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 3 IQLFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKT-FCDDVEYDYGYCIKWRSQCC 61
+++FF + + + P R C +GIC+ FC E C ++CC
Sbjct: 1 MKVFFLFAVLFCLVQTNSGDVPPGIRNTICHMQQGICRLFFCHSGEKKRDICSDPWNRCC 60
Query: 62 V 62
V
Sbjct: 61 V 61
>gi|58865339 defensin, beta 121 [Homo sapiens]
Length = 76
Score = 25.8 bits (55), Expect = 7.9
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 31 RCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62
+C G C+T C + E Y C K ++CCV
Sbjct: 22 KCWGKSGRCRTTCKESEVYYILC-KTEAKCCV 52
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.336 0.149 0.551
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,604,978
Number of Sequences: 37866
Number of extensions: 93666
Number of successful extensions: 306
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 25
length of query: 62
length of database: 18,247,518
effective HSP length: 35
effective length of query: 27
effective length of database: 16,922,208
effective search space: 456899616
effective search space used: 456899616
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.