Guide to the Human Genome
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Name: LOC100290511 Sequence: fasta or formatted (96aa) NCBI GI: 239747474
Description:

PREDICTED: hypothetical protein XP_002347534

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.6         15           2
 C cysteine            3.1          3           1
 D aspartate           2.1          2           1
 E glutamate           2.1          2           1
 F phenylalanine       1.0          1           1
 G glycine            12.5         12           3
 H histidine           0.0          0           0
 I isoleucine          3.1          3           1
 K lysine              0.0          0           0
 L leucine            10.4         10           3
 M methionine          2.1          2           1
 N asparagine          2.1          2           1
 P proline            10.4         10           1
 Q glutamine           1.0          1           1
 R arginine            6.2          6           2
 S serine             13.5         13           2
 T threonine           8.3          8           1
 V valine              4.2          4           1
 W tryptophan          2.1          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347534 
LOC100293057          1.000   PREDICTED: hypothetical protein 
LOC100287150          1.000   PREDICTED: hypothetical protein XP_002342203 
LOC727804             0.065   PREDICTED: hypothetical protein 
LOC100292339          0.059   PREDICTED: hypothetical protein 
LOC100288937          0.059   PREDICTED: hypothetical protein XP_002343343 
TRIM33                0.047   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.047   tripartite motif-containing 33 protein isoform alpha...
C6orf174              0.041   hypothetical protein LOC387104 
MEX3A                 0.041   MEX3A protein 
ELK1                  0.041   ELK1 protein 
ELK1                  0.041   ELK1 protein 
LOC100293604          0.041   PREDICTED: hypothetical protein 
LOC100289721          0.041   PREDICTED: hypothetical protein XP_002347280 
LOC100287837          0.041   PREDICTED: hypothetical protein XP_002343157 
PTPLA                 0.041   protein tyrosine phosphatase-like, member A 
LOC100292913          0.035   PREDICTED: hypothetical protein 
LOC100290124          0.035   PREDICTED: hypothetical protein XP_002347307 
LOC100288752          0.035   PREDICTED: hypothetical protein XP_002343173 
LBXCOR1               0.035   LBXCOR1 homolog 
IRF7                  0.035   interferon regulatory factor 7 isoform b 
ZSWIM6                0.035   zinc finger, SWIM-type containing 6 
LOC401399             0.035   hypothetical protein LOC401399 
FIZ1                  0.035   FLT3-interacting zinc finger 1 
MSH6                  0.035   mutS homolog 6 
SOX10                 0.035   SRY (sex determining region Y)-box 10 
DLGAP3                0.035   discs, large (Drosophila) homolog-associated protei...
ADRA1D                0.035   alpha-1D-adrenergic receptor 
BTBD2                 0.035   BTB (POZ) domain containing 2 
TMEM119               0.035   transmembrane protein 119 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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