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Search of human proteins with 78486558
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|78486558 dermokine isoform 1 precursor [Homo sapiens]
(90 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|78486558 dermokine isoform 1 precursor [Homo sapiens] 189 3e-49
gi|186928831 dermokine isoform 6 [Homo sapiens] 134 1e-32
gi|33504489 dermokine isoform 2 precursor [Homo sapiens] 134 1e-32
gi|186928833 dermokine isoform 7 [Homo sapiens] 125 9e-30
gi|10835218 topoisomerase (DNA) III alpha [Homo sapiens] 30 0.41
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 29 0.69
gi|239756539 PREDICTED: hypothetical protein XP_002344929 [Homo ... 28 1.5
gi|239751144 PREDICTED: hypothetical protein XP_002347730 [Homo ... 28 1.5
gi|239745508 PREDICTED: hypothetical protein XP_002343507 [Homo ... 28 1.5
gi|19923391 homeobox D3 [Homo sapiens] 28 2.0
gi|9665248 transporter 1, ATP-binding cassette, sub-family B [Ho... 27 3.4
gi|57232746 nuclear receptor interacting protein 1 [Homo sapiens] 27 3.4
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 26 5.9
gi|30425553 reticulon 4 receptor-like 1 [Homo sapiens] 26 5.9
gi|57864582 hornerin [Homo sapiens] 26 7.7
gi|118572606 hemicentin 1 [Homo sapiens] 26 7.7
gi|42794771 thioredoxin domain containing 5 isoform 1 precursor ... 26 7.7
gi|5729947 neuromedin U [Homo sapiens] 26 7.7
gi|253970506 Ewing sarcoma breakpoint region 1 isoform 5 [Homo s... 25 10.0
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 25 10.0
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 25 10.0
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 25 10.0
gi|24497501 forkhead box A1 [Homo sapiens] 25 10.0
gi|4503489 ephrin-B3 precursor [Homo sapiens] 25 10.0
gi|145199237 transcription elongation factor B polypeptide 3 bin... 25 10.0
>gi|78486558 dermokine isoform 1 precursor [Homo sapiens]
Length = 90
Score = 189 bits (481), Expect = 3e-49
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MNMKPATASALLLLLLGLAWTQGSHGWGADASSLQKRAGRADQNYNYNQHAYPTAYGGKY 60
MNMKPATASALLLLLLGLAWTQGSHGWGADASSLQKRAGRADQNYNYNQHAYPTAYGGKY
Sbjct: 1 MNMKPATASALLLLLLGLAWTQGSHGWGADASSLQKRAGRADQNYNYNQHAYPTAYGGKY 60
Query: 61 SVKTPAKGGVSPSSSASRVQPGLLQWVKFW 90
SVKTPAKGGVSPSSSASRVQPGLLQWVKFW
Sbjct: 61 SVKTPAKGGVSPSSSASRVQPGLLQWVKFW 90
>gi|186928831 dermokine isoform 6 [Homo sapiens]
Length = 189
Score = 134 bits (338), Expect = 1e-32
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 28 GADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKGGVSPSSSASRVQPGLLQWV 87
GADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKGGVSPSSSASRVQPGLLQWV
Sbjct: 127 GADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKGGVSPSSSASRVQPGLLQWV 186
Query: 88 KFW 90
KFW
Sbjct: 187 KFW 189
>gi|33504489 dermokine isoform 2 precursor [Homo sapiens]
Length = 476
Score = 134 bits (338), Expect = 1e-32
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 28 GADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKGGVSPSSSASRVQPGLLQWV 87
GADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKGGVSPSSSASRVQPGLLQWV
Sbjct: 414 GADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKGGVSPSSSASRVQPGLLQWV 473
Query: 88 KFW 90
KFW
Sbjct: 474 KFW 476
>gi|186928833 dermokine isoform 7 [Homo sapiens]
Length = 137
Score = 125 bits (313), Expect = 9e-30
Identities = 63/77 (81%), Positives = 63/77 (81%), Gaps = 14/77 (18%)
Query: 28 GADASSLQKRAGRADQ--------------NYNYNQHAYPTAYGGKYSVKTPAKGGVSPS 73
GADASSLQKRAGRADQ NYNYNQHAYPTAYGGKYSVKTPAKGGVSPS
Sbjct: 61 GADASSLQKRAGRADQPGAGWQEVAAVTSKNYNYNQHAYPTAYGGKYSVKTPAKGGVSPS 120
Query: 74 SSASRVQPGLLQWVKFW 90
SSASRVQPGLLQWVKFW
Sbjct: 121 SSASRVQPGLLQWVKFW 137
>gi|10835218 topoisomerase (DNA) III alpha [Homo sapiens]
Length = 1001
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 27 WGADASSLQKRAGRADQNYNYNQHAYPTAYGGKYS 61
WGA A S+ +R G +N N + A+P + KY+
Sbjct: 389 WGAFAQSILERGGPTPRNGNKSDQAHPPIHPTKYT 423
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 29.3 bits (64), Expect = 0.69
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 23 GSHGWGADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKGGVSPSSSASRVQP 81
G++G D S Q A Y Q AY T+YG +V+ + G +P++ + QP
Sbjct: 42 GTYGQPTDVSYTQ-----AQTTATYGQTAYATSYGQPPTVEGTSTGYTTPTAPQAYSQP 95
>gi|239756539 PREDICTED: hypothetical protein XP_002344929 [Homo
sapiens]
Length = 223
Score = 28.1 bits (61), Expect = 1.5
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 11 LLLLLLGLAWTQGSHGWGADASSLQKRAGRADQNYNYN-QHAYPTAYGGKYSVKTPAKGG 69
LLLLL G W HG G +RAG Q N P+A + + A G
Sbjct: 68 LLLLLRGQCWILVGHGAGCGGRG--RRAGEWIQGENAGLVTRTPSAARSERNAADLASEG 125
Query: 70 VSPSSSASRVQPGLLQ 85
+ + + PGLL+
Sbjct: 126 AAQEAGRRKAAPGLLK 141
>gi|239751144 PREDICTED: hypothetical protein XP_002347730 [Homo
sapiens]
Length = 223
Score = 28.1 bits (61), Expect = 1.5
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 11 LLLLLLGLAWTQGSHGWGADASSLQKRAGRADQNYNYN-QHAYPTAYGGKYSVKTPAKGG 69
LLLLL G W HG G +RAG Q N P+A + + A G
Sbjct: 68 LLLLLRGQCWILVGHGAGCGGRG--RRAGEWIQGENAGLVTRTPSAARSERNAADLASEG 125
Query: 70 VSPSSSASRVQPGLLQ 85
+ + + PGLL+
Sbjct: 126 AAQEAGRRKAAPGLLK 141
>gi|239745508 PREDICTED: hypothetical protein XP_002343507 [Homo
sapiens]
Length = 223
Score = 28.1 bits (61), Expect = 1.5
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 11 LLLLLLGLAWTQGSHGWGADASSLQKRAGRADQNYNYN-QHAYPTAYGGKYSVKTPAKGG 69
LLLLL G W HG G +RAG Q N P+A + + A G
Sbjct: 68 LLLLLRGQCWILVGHGAGCGGRG--RRAGEWIQGENAGLVTRTPSAARSERNAADLASEG 125
Query: 70 VSPSSSASRVQPGLLQ 85
+ + + PGLL+
Sbjct: 126 AAQEAGRRKAAPGLLK 141
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 53 PTAYGGKYSVKTPAKGGVSPSSSASRVQPGLLQWVK 88
PT GG K P KGG + SSS++ + + W+K
Sbjct: 131 PTNPGGGVPAKKP-KGGPNASSSSATISKQIFPWMK 165
>gi|9665248 transporter 1, ATP-binding cassette, sub-family B [Homo
sapiens]
Length = 808
Score = 26.9 bits (58), Expect = 3.4
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 3 MKPATASALLLLLLGLAWTQGSHGWGADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSV 62
+KP A+AL L L GLA + WGA G AD + ++PTA+ Y+
Sbjct: 156 LKPL-AAALGLALPGLALFRELISWGA--------PGSADSTRLLHWGSHPTAFVVSYAA 206
Query: 63 KTPA 66
PA
Sbjct: 207 ALPA 210
>gi|57232746 nuclear receptor interacting protein 1 [Homo sapiens]
Length = 1158
Score = 26.9 bits (58), Expect = 3.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 9 SALLLLLLGLAWTQGSHGWGADASSLQKRAGRADQNYNYNQHAYPT 54
S +L L GL Q + G G DQN+N + A+PT
Sbjct: 15 SIVLTYLEGLLMHQAAGGSGTAVDKKSAGHNEEDQNFNISGSAFPT 60
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 23 GSHGWGADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKGGVSPSSSASRVQP 81
GS G + S Q G+ Y Q P++ G Y + + P S + QP
Sbjct: 76 GSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQP 134
>gi|30425553 reticulon 4 receptor-like 1 [Homo sapiens]
Length = 441
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 26 GWGADASSLQKRAGRADQNYNYNQHAYPTAYG---GKYSVKTP--AKGGVSPSSSASRVQ 80
G G A L A D + ++ PTA GK + +TP A GV +SSAS +
Sbjct: 369 GAGKQAPELPDYA--PDYQHKFSFDIMPTARPKRKGKCARRTPIRAPSGVQQASSASSLG 426
Query: 81 PGLLQW 86
LL W
Sbjct: 427 ASLLAW 432
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 25.8 bits (55), Expect = 7.7
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 17 GLAWTQGSHGWGADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKG-------- 68
G + + G HG G+ SS + Q+ Y QH + + Y G
Sbjct: 914 GRSSSSGRHGSGSGQSSGFGHKSSSGQSSGYTQHGSGSGHSSSYEQHGSRSGQSSRSEQH 973
Query: 69 GVSPSSSASRVQPG 82
G S SS+S Q G
Sbjct: 974 GSSSGSSSSYGQHG 987
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 38 AGRADQNYNYNQHAYPTAYGGKYSVKTPA-KGGVSPSSSASRVQPGLLQWVK 88
AGR D+N++ N + P+ G + V V+ + A+ + P + W+K
Sbjct: 3136 AGRDDKNFHLNVYVPPSIEGPEREVIVETISNPVTLTCDATGIPPPTIAWLK 3187
>gi|42794771 thioredoxin domain containing 5 isoform 1 precursor
[Homo sapiens]
Length = 432
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 4 KPATASALLLLLLGLAWTQGSHGWGADA 31
+PA +ALLLLLLG G WGA A
Sbjct: 14 RPAALTALLLLLLGHG---GGGRWGARA 38
>gi|5729947 neuromedin U [Homo sapiens]
Length = 174
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 6 ATASALLLLLLGLAWTQGS 24
A AS LLLLLL LAW G+
Sbjct: 17 AAASPLLLLLLLLAWCAGA 35
>gi|253970506 Ewing sarcoma breakpoint region 1 isoform 5 [Homo
sapiens]
Length = 354
Score = 25.4 bits (54), Expect = 10.0
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 23 GSHGWGADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKGGVSPSSSASRVQP 81
G++G D S Q A Y Q AY T+YG P G +P++ + QP
Sbjct: 42 GTYGQPTDVSYTQ-----AQTTATYGQTAYATSYG------QPPTGYTTPTAPQAYSQP 89
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 25.4 bits (54), Expect = 10.0
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 23 GSHGWGADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKGGVSPSSSASRVQP 81
G++G D S Q A Y Q AY T+YG P G +P++ + QP
Sbjct: 42 GTYGQPTDVSYTQ-----AQTTATYGQTAYATSYG------QPPTGYTTPTAPQAYSQP 89
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 25.4 bits (54), Expect = 10.0
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 23 GSHGWGADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKGGVSPSSSASRVQP 81
G++G D S Q A Y Q AY T+YG P G +P++ + QP
Sbjct: 42 GTYGQPTDVSYTQ-----AQTTATYGQTAYATSYG------QPPTGYTTPTAPQAYSQP 89
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 25.4 bits (54), Expect = 10.0
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 23 GSHGWGADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKGGVSPSSSASRVQP 81
G++G D S Q A Y Q AY T+YG P G +P++ + QP
Sbjct: 42 GTYGQPTDVSYTQ-----AQTTATYGQTAYATSYG------QPPTGYTTPTAPQAYSQP 89
>gi|24497501 forkhead box A1 [Homo sapiens]
Length = 472
Score = 25.4 bits (54), Expect = 10.0
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 50 HAYPTAYGGKYSVKTPAKGGVSPSSSASRVQPGLL 84
H+ TA GG +KTPA P SS PG L
Sbjct: 337 HSGATATGGASELKTPASSTAPPISSG----PGAL 367
>gi|4503489 ephrin-B3 precursor [Homo sapiens]
Length = 340
Score = 25.4 bits (54), Expect = 10.0
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 5 PATASA---LLLLLLGLAWTQGSHGWGADASSLQKRAGRADQNYNYNQHAYPTAYGGKYS 61
PA A A L LLLLG+A G+ W ++R + + ++H P ++G S
Sbjct: 226 PAVAGAAGGLALLLLGVAGAGGAMCW-------RRRRAKPSE----SRHPGPGSFGRGGS 274
Query: 62 VKTPAKGGVSPSSSASRVQPGLL 84
+ GG+ P + +PG L
Sbjct: 275 LGLGGGGGMGPREA----EPGEL 293
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 25.4 bits (54), Expect = 10.0
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 28 GADASSLQKRAGRADQNYNYNQHAYPTAYGGKYSVKTPAKGGVSPSSSASRVQPG 82
G ASS +++A R + A P A GK PA+ SP+S SR G
Sbjct: 417 GPQASSPRRKAERPEGTKKKPSSATPVATSGKGRPDRPAR-RPSPTSGDSRPAAG 470
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.127 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,654,952
Number of Sequences: 37866
Number of extensions: 137940
Number of successful extensions: 408
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 27
length of query: 90
length of database: 18,247,518
effective HSP length: 62
effective length of query: 28
effective length of database: 15,899,826
effective search space: 445195128
effective search space used: 445195128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.