Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 78482627
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens]
(400 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens] 808 0.0
gi|78482626 ring finger protein 30 isoform 2 [Homo sapiens] 704 0.0
gi|34878844 tripartite motif-containing 55 isoform 3 [Homo sapiens] 435 e-122
gi|34878836 tripartite motif-containing 55 isoform 1 [Homo sapiens] 435 e-122
gi|34878821 tripartite motif-containing 55 isoform 2 [Homo sapiens] 435 e-122
gi|19924163 muscle specific ring finger protein 1 [Homo sapiens] 406 e-113
gi|34878852 tripartite motif-containing 55 isoform 4 [Homo sapiens] 307 1e-83
gi|62865606 tripartite motif-containing 36 isoform 1 [Homo sapiens] 130 2e-30
gi|148833499 midline 1 [Homo sapiens] 126 4e-29
gi|4557753 midline 1 [Homo sapiens] 126 4e-29
gi|15451852 midline 1 [Homo sapiens] 126 4e-29
gi|223890259 midline 2 isoform 2 [Homo sapiens] 125 7e-29
gi|223890257 midline 2 isoform 1 [Homo sapiens] 125 7e-29
gi|47174859 tripartite motif-containing 46 [Homo sapiens] 124 1e-28
gi|27436877 tripartite motif-containing 59 [Homo sapiens] 88 1e-17
gi|32454739 tripartite motif-containing 3 [Homo sapiens] 87 3e-17
gi|32454737 tripartite motif-containing 3 [Homo sapiens] 87 3e-17
gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens] 86 8e-17
gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens] 86 8e-17
gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens] 86 8e-17
gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens] 86 8e-17
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 78 2e-14
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 78 2e-14
gi|134288906 tripartite motif-containing 67 [Homo sapiens] 77 3e-14
gi|55741632 fibronectin type III and SPRY domain containing 2 [H... 76 5e-14
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s... 67 3e-11
gi|89886468 fibronectin type III and SPRY domain containing 1-li... 67 3e-11
gi|223718222 fibronectin type III and SPRY domain containing 1-l... 67 3e-11
gi|145275183 tripartite motif protein 34 isoform 3 [Homo sapiens] 66 6e-11
gi|51477687 tripartite motif protein 34 isoform 1 [Homo sapiens] 66 6e-11
>gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens]
Length = 400
Score = 808 bits (2087), Expect = 0.0
Identities = 400/400 (100%), Positives = 400/400 (100%)
Query: 1 MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP 60
MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
Sbjct: 1 MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP 60
Query: 61 LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA 120
LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA
Sbjct: 61 LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA 120
Query: 121 EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPR 180
EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPR
Sbjct: 121 EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPR 180
Query: 181 LECSGTNTTYCSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEV 240
LECSGTNTTYCSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEV
Sbjct: 181 LECSGTNTTYCSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEV 240
Query: 241 CQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLE 300
CQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLE
Sbjct: 241 CQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLE 300
Query: 301 ASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFTVRVEH 360
ASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFTVRVEH
Sbjct: 301 ASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFTVRVEH 360
Query: 361 VAEMLRTIDFQPGASGEEEEVAPDGEEGSAGPEEERPDGP 400
VAEMLRTIDFQPGASGEEEEVAPDGEEGSAGPEEERPDGP
Sbjct: 361 VAEMLRTIDFQPGASGEEEEVAPDGEEGSAGPEEERPDGP 400
>gi|78482626 ring finger protein 30 isoform 2 [Homo sapiens]
Length = 358
Score = 704 bits (1816), Expect = 0.0
Identities = 358/400 (89%), Positives = 358/400 (89%), Gaps = 42/400 (10%)
Query: 1 MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP 60
MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
Sbjct: 1 MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP 60
Query: 61 LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA 120
LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA
Sbjct: 61 LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA 120
Query: 121 EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPR 180
EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQK
Sbjct: 121 EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQK--------- 171
Query: 181 LECSGTNTTYCSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEV 240
SELSDGIAMLVAGNDRVQAVITQMEEV
Sbjct: 172 ---------------------------------SELSDGIAMLVAGNDRVQAVITQMEEV 198
Query: 241 CQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLE 300
CQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLE
Sbjct: 199 CQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLE 258
Query: 301 ASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFTVRVEH 360
ASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFTVRVEH
Sbjct: 259 ASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFTVRVEH 318
Query: 361 VAEMLRTIDFQPGASGEEEEVAPDGEEGSAGPEEERPDGP 400
VAEMLRTIDFQPGASGEEEEVAPDGEEGSAGPEEERPDGP
Sbjct: 319 VAEMLRTIDFQPGASGEEEEVAPDGEEGSAGPEEERPDGP 358
>gi|34878844 tripartite motif-containing 55 isoform 3 [Homo sapiens]
Length = 452
Score = 435 bits (1119), Expect = e-122
Identities = 225/396 (56%), Positives = 273/396 (68%), Gaps = 47/396 (11%)
Query: 1 MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP 60
M+ ++ +K + +MDNLEKQLICPICLEMF+KPVVILPCQHNLCRKCA+D+FQASNP
Sbjct: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
Query: 61 LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA 120
+RG TT++SGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES+RP K
Sbjct: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRP--EKK 118
Query: 121 EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPR 180
MCEEHEEE+INIYCL+CEVPTCSLCKVFGAHKDC+VAPL +++RQK
Sbjct: 119 SDQPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQK--------- 169
Query: 181 LECSGTNTTYCSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEV 240
SELSDGIA+LV NDRVQ VI+Q+E+
Sbjct: 170 ---------------------------------SELSDGIAILVGSNDRVQGVISQLEDT 196
Query: 241 CQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLE 300
C+TIE+ R+QKQ L ++F+ L +LEERK E+ Q + R QEEKL+ VR LI++Y DHLE
Sbjct: 197 CKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKKYSDHLE 256
Query: 301 ASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFTVRVEH 360
SKLVES IQ M+EP+MA++LQ AK L+ K+ SK + E GYE+M FTV +
Sbjct: 257 NVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKIEHGYENMNHFTVNLNR 316
Query: 361 VAEMLRTIDFQPGASGEEEEVAPDGE---EGSAGPE 393
+++R IDF EEEE +GE EG G E
Sbjct: 317 EEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGE 352
>gi|34878836 tripartite motif-containing 55 isoform 1 [Homo sapiens]
Length = 548
Score = 435 bits (1119), Expect = e-122
Identities = 225/396 (56%), Positives = 273/396 (68%), Gaps = 47/396 (11%)
Query: 1 MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP 60
M+ ++ +K + +MDNLEKQLICPICLEMF+KPVVILPCQHNLCRKCA+D+FQASNP
Sbjct: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
Query: 61 LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA 120
+RG TT++SGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES+RP K
Sbjct: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRP--EKK 118
Query: 121 EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPR 180
MCEEHEEE+INIYCL+CEVPTCSLCKVFGAHKDC+VAPL +++RQK
Sbjct: 119 SDQPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQK--------- 169
Query: 181 LECSGTNTTYCSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEV 240
SELSDGIA+LV NDRVQ VI+Q+E+
Sbjct: 170 ---------------------------------SELSDGIAILVGSNDRVQGVISQLEDT 196
Query: 241 CQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLE 300
C+TIE+ R+QKQ L ++F+ L +LEERK E+ Q + R QEEKL+ VR LI++Y DHLE
Sbjct: 197 CKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKKYSDHLE 256
Query: 301 ASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFTVRVEH 360
SKLVES IQ M+EP+MA++LQ AK L+ K+ SK + E GYE+M FTV +
Sbjct: 257 NVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKIEHGYENMNHFTVNLNR 316
Query: 361 VAEMLRTIDFQPGASGEEEEVAPDGE---EGSAGPE 393
+++R IDF EEEE +GE EG G E
Sbjct: 317 EEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGE 352
>gi|34878821 tripartite motif-containing 55 isoform 2 [Homo sapiens]
Length = 540
Score = 435 bits (1119), Expect = e-122
Identities = 225/396 (56%), Positives = 273/396 (68%), Gaps = 47/396 (11%)
Query: 1 MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP 60
M+ ++ +K + +MDNLEKQLICPICLEMF+KPVVILPCQHNLCRKCA+D+FQASNP
Sbjct: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
Query: 61 LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA 120
+RG TT++SGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES+RP K
Sbjct: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRP--EKK 118
Query: 121 EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPR 180
MCEEHEEE+INIYCL+CEVPTCSLCKVFGAHKDC+VAPL +++RQK
Sbjct: 119 SDQPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQK--------- 169
Query: 181 LECSGTNTTYCSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEV 240
SELSDGIA+LV NDRVQ VI+Q+E+
Sbjct: 170 ---------------------------------SELSDGIAILVGSNDRVQGVISQLEDT 196
Query: 241 CQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLE 300
C+TIE+ R+QKQ L ++F+ L +LEERK E+ Q + R QEEKL+ VR LI++Y DHLE
Sbjct: 197 CKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKKYSDHLE 256
Query: 301 ASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFTVRVEH 360
SKLVES IQ M+EP+MA++LQ AK L+ K+ SK + E GYE+M FTV +
Sbjct: 257 NVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKIEHGYENMNHFTVNLNR 316
Query: 361 VAEMLRTIDFQPGASGEEEEVAPDGE---EGSAGPE 393
+++R IDF EEEE +GE EG G E
Sbjct: 317 EEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGE 352
>gi|19924163 muscle specific ring finger protein 1 [Homo sapiens]
Length = 353
Score = 406 bits (1043), Expect = e-113
Identities = 210/388 (54%), Positives = 272/388 (70%), Gaps = 47/388 (12%)
Query: 10 LLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTT 69
L+ D + M+NLEKQLICPICLEMF+KPVVILPCQHNLCRKCAND+FQA+NP W SRGS+
Sbjct: 7 LIQDGNPMENLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTSRGSSV 66
Query: 70 VSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQE-SSRPLHSKAEQHLMCEE 128
SGGRFRCP+CRHEV++DRHGVYGLQRNLLVENIIDIYKQE SSRPL + H MC+E
Sbjct: 67 SMSGGRFRCPTCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGS--HPMCKE 124
Query: 129 HEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPRLECSGTNT 188
HE+EKINIYCL+CEVPTCS+CKVFG HK CEVAPL ++++ QK
Sbjct: 125 HEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQSVFQGQK----------------- 167
Query: 189 TYCSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNS 248
+EL++ I+MLVAGNDRVQ +ITQ+E+ + ++NS
Sbjct: 168 -------------------------TELNNCISMLVAGNDRVQTIITQLEDSRRVTKENS 202
Query: 249 RRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLEASSKLVES 308
+ K+ L+Q+F++L A+L+E+K ELLQ + +EQE+KL + LI+QY + L+ S+KLVE+
Sbjct: 203 HQVKEELSQKFDTLYAILDEKKSELLQRITQEQEKKLSFIEALIQQYQEQLDKSTKLVET 262
Query: 309 AIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFTVRVEHVAEMLRTI 368
AIQS++EP A +L AK+LI + SK G+ E G+E+M+ FT+ +EH+A+ LR I
Sbjct: 263 AIQSLDEPGGATFLLTAKQLIKSIVEASKGCQLGKTEQGFENMDFFTLDLEHIADALRAI 322
Query: 369 DFQPGASGEE--EEVAPDGEEGSAGPEE 394
DF EE EE + EE + G EE
Sbjct: 323 DFGTDEEEEEFIEEEDQEEEESTEGKEE 350
>gi|34878852 tripartite motif-containing 55 isoform 4 [Homo sapiens]
Length = 241
Score = 307 bits (786), Expect = 1e-83
Identities = 153/245 (62%), Positives = 177/245 (72%), Gaps = 44/245 (17%)
Query: 1 MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP 60
M+ ++ +K + +MDNLEKQLICPICLEMF+KPVVILPCQHNLCRKCA+D+FQASNP
Sbjct: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
Query: 61 LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA 120
+RG TT++SGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES+RP K
Sbjct: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRP--EKK 118
Query: 121 EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPR 180
MCEEHEEE+INIYCL+CEVPTCSLCKVFGAHKDC+VAPL +++RQK
Sbjct: 119 SDQPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQK--------- 169
Query: 181 LECSGTNTTYCSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEV 240
SELSDGIA+LV NDRVQ VI+Q+E+
Sbjct: 170 ---------------------------------SELSDGIAILVGSNDRVQGVISQLEDT 196
Query: 241 CQTIE 245
C+TIE
Sbjct: 197 CKTIE 201
>gi|62865606 tripartite motif-containing 36 isoform 1 [Homo sapiens]
Length = 728
Score = 130 bits (327), Expect = 2e-30
Identities = 112/469 (23%), Positives = 188/469 (40%), Gaps = 131/469 (27%)
Query: 16 SMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGR 75
++ N+E++LICP C E+F+ P+ ILPCQH++C KC ++ + + GS +
Sbjct: 23 TIKNIERELICPACKELFTHPL-ILPCQHSICHKCVKELLLTLDDSFNDVGSDNSNQSSP 81
Query: 76 -------------------------------FRCPSCRHEVVLDRHGVYGLQRNLLVENI 104
F CP C H+V L G+ GL RN +E I
Sbjct: 82 RLRLPSPSMDKIDRINRPGWKRNSLTPRTTVFPCPGCEHDVDLGERGINGLFRNFTLETI 141
Query: 105 IDIYKQ------------------ESSR------------------PLHSKAEQH----- 123
++ Y+Q ES++ P + QH
Sbjct: 142 VERYRQAARAATAIMCDLCKPPPQESTKSCMDCSASYCNECFKIHHPWGTIKAQHEYVGP 201
Query: 124 --------LMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDL 175
LMC EHE E+IN+YC C P C LCK+ G H + V + + YK K++
Sbjct: 202 TTNFRPKILMCPEHETERINMYCELCRRPVCHLCKLGGNHANHRVTTMSSAYKTLKEK-- 259
Query: 176 TLLPRLECSGTNTTYCSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVIT 235
LS I L+ +V++ I+
Sbjct: 260 ----------------------------------------LSKDIDYLIGKESQVKSQIS 279
Query: 236 QMEEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQY 295
++ + + E N R K+ FE L VLEERK +L+A+ ++ +L + + + +Y
Sbjct: 280 ELNLLMKETECNGERAKEEAITHFEKLFEVLEERKSSVLKAIDSSKKLRLDKFQTQMEEY 339
Query: 296 GDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFT 355
LE ++ LV A + ++E + ++Q AK+L ++ ++ + RP S E +
Sbjct: 340 QGLLE-NNGLVGYAQEVLKETDQSCFVQTAKQLHLRIQKATESLKSFRP-AAQTSFEDYV 397
Query: 356 VRVEHVAEMLRTIDF------QPGASGEEEEVAPDGEEGSAGPEEERPD 398
V E+L + F P + E+ +V + PE+++ D
Sbjct: 398 VNTSKQTELLGELSFFSSGIDVPEINEEQSKVYNNALINWHHPEKDKAD 446
>gi|148833499 midline 1 [Homo sapiens]
Length = 667
Score = 126 bits (316), Expect = 4e-29
Identities = 96/387 (24%), Positives = 179/387 (46%), Gaps = 42/387 (10%)
Query: 17 MDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRF 76
M+ LE +L CPICLE+F P+ +LPC H+LC CA+ + + +S S T F
Sbjct: 1 METLESELTCPICLELFEDPL-LLPCAHSLCFNCAHRILVSHCATNESVESITA-----F 54
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES----SRPLHSKAEQHL-------- 124
+CP+CRH + L + G+ GL+RN+ ++NIID +++ S + P ++ E+
Sbjct: 55 QCPTCRHVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDANTMTSA 114
Query: 125 ------MCEEHEEEKINIYCLSCEVPTCSLC--------KVFGAHKDCEVAPLPTIYKRQ 170
C++ + C++CEV C C K F H+ E P I
Sbjct: 115 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLM 174
Query: 171 KKQDLTLLPRLECSGTNTTYCSLD--LPSSSDPPILA-SQNTKIIDSELSDGIAMLVAGN 227
+ + C + C+L + D + A S+ + L + L+ N
Sbjct: 175 CLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDKLKQNLESNLTNLIKRN 234
Query: 228 DRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQR 287
++ ++ ++ + CQ +E N+ RQ+ L + + L ++++R+ + + +E K+ R
Sbjct: 235 TELETLLAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQRRQIIGTKI---KEGKVMR 291
Query: 288 VRGLIRQYGD---HLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRP 344
+R L +Q + +E S+ L+ A S++E A +LQ AK + +V + P
Sbjct: 292 LRKLAQQIANCKQCIERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLIP 351
Query: 345 EPGY-ESMEQFTVRVEHVAEMLRTIDF 370
E ++ + F + ++L +D+
Sbjct: 352 EINLNDTFDTFALDFSREKKLLECLDY 378
>gi|4557753 midline 1 [Homo sapiens]
Length = 667
Score = 126 bits (316), Expect = 4e-29
Identities = 96/387 (24%), Positives = 179/387 (46%), Gaps = 42/387 (10%)
Query: 17 MDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRF 76
M+ LE +L CPICLE+F P+ +LPC H+LC CA+ + + +S S T F
Sbjct: 1 METLESELTCPICLELFEDPL-LLPCAHSLCFNCAHRILVSHCATNESVESITA-----F 54
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES----SRPLHSKAEQHL-------- 124
+CP+CRH + L + G+ GL+RN+ ++NIID +++ S + P ++ E+
Sbjct: 55 QCPTCRHVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDANTMTSA 114
Query: 125 ------MCEEHEEEKINIYCLSCEVPTCSLC--------KVFGAHKDCEVAPLPTIYKRQ 170
C++ + C++CEV C C K F H+ E P I
Sbjct: 115 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLM 174
Query: 171 KKQDLTLLPRLECSGTNTTYCSLD--LPSSSDPPILA-SQNTKIIDSELSDGIAMLVAGN 227
+ + C + C+L + D + A S+ + L + L+ N
Sbjct: 175 CLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDKLKQNLESNLTNLIKRN 234
Query: 228 DRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQR 287
++ ++ ++ + CQ +E N+ RQ+ L + + L ++++R+ + + +E K+ R
Sbjct: 235 TELETLLAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQRRQIIGTKI---KEGKVMR 291
Query: 288 VRGLIRQYGD---HLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRP 344
+R L +Q + +E S+ L+ A S++E A +LQ AK + +V + P
Sbjct: 292 LRKLAQQIANCKQCIERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLIP 351
Query: 345 EPGY-ESMEQFTVRVEHVAEMLRTIDF 370
E ++ + F + ++L +D+
Sbjct: 352 EINLNDTFDTFALDFSREKKLLECLDY 378
>gi|15451852 midline 1 [Homo sapiens]
Length = 667
Score = 126 bits (316), Expect = 4e-29
Identities = 96/387 (24%), Positives = 179/387 (46%), Gaps = 42/387 (10%)
Query: 17 MDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRF 76
M+ LE +L CPICLE+F P+ +LPC H+LC CA+ + + +S S T F
Sbjct: 1 METLESELTCPICLELFEDPL-LLPCAHSLCFNCAHRILVSHCATNESVESITA-----F 54
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES----SRPLHSKAEQHL-------- 124
+CP+CRH + L + G+ GL+RN+ ++NIID +++ S + P ++ E+
Sbjct: 55 QCPTCRHVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDANTMTSA 114
Query: 125 ------MCEEHEEEKINIYCLSCEVPTCSLC--------KVFGAHKDCEVAPLPTIYKRQ 170
C++ + C++CEV C C K F H+ E P I
Sbjct: 115 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLM 174
Query: 171 KKQDLTLLPRLECSGTNTTYCSLD--LPSSSDPPILA-SQNTKIIDSELSDGIAMLVAGN 227
+ + C + C+L + D + A S+ + L + L+ N
Sbjct: 175 CLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDKLKQNLESNLTNLIKRN 234
Query: 228 DRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQR 287
++ ++ ++ + CQ +E N+ RQ+ L + + L ++++R+ + + +E K+ R
Sbjct: 235 TELETLLAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQRRQIIGTKI---KEGKVMR 291
Query: 288 VRGLIRQYGD---HLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRP 344
+R L +Q + +E S+ L+ A S++E A +LQ AK + +V + P
Sbjct: 292 LRKLAQQIANCKQCIERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLIP 351
Query: 345 EPGY-ESMEQFTVRVEHVAEMLRTIDF 370
E ++ + F + ++L +D+
Sbjct: 352 EINLNDTFDTFALDFSREKKLLECLDY 378
>gi|223890259 midline 2 isoform 2 [Homo sapiens]
Length = 705
Score = 125 bits (314), Expect = 7e-29
Identities = 97/390 (24%), Positives = 178/390 (45%), Gaps = 48/390 (12%)
Query: 17 MDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRF 76
M+ LE +L CPICLE+F P+ +LPC H+LC CA+ + +S +S T F
Sbjct: 21 METLESELTCPICLELFEDPL-LLPCAHSLCFSCAHRILVSSCSSGESIEPITA-----F 74
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES----SRPLHSKAEQHL-------- 124
+CP+CR+ + L+ G+ GL+RN+ ++NIID +++ S + P S+ E+
Sbjct: 75 QCPTCRYVISLNHRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSESRRERTYRPTTAMSS 134
Query: 125 ------MCEEHEEEKINIYCLSCEVPTCSLC--------KVFGAHKDCEVAPLPTIYKRQ 170
CE+ C++CEV C C K F +H+ V P+P + R
Sbjct: 135 ERIACQFCEQDPPRDAVKTCITCEVSYCDRCLRATHPNKKPFTSHR--LVEPVPDTHLR- 191
Query: 171 KKQDLTLLP------RLECSGTNTTYCSL-DLPSSSDPPILASQNTKI--IDSELSDGIA 221
+T L + C + C+L L +AS N + + L +
Sbjct: 192 ---GITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLT 248
Query: 222 MLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQ 281
LV N ++ + ++ ++CQ +E N+ + L + + L ++++RK + + +
Sbjct: 249 NLVKRNSELENQMAKLIQICQQVEVNTAMHEAKLMEECDELVEIIQQRKQMIAVKIKETK 308
Query: 282 EEKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELA 341
KL+++ + LE S+ L+ A ++E A +LQ AK + +V +
Sbjct: 309 VMKLRKLAQQVANCRQCLERSTVLINQAEHILKENDQARFLQSAKNIAERVAMATASSQV 368
Query: 342 GRPEPGY-ESMEQFTVRVEHVAEMLRTIDF 370
P+ + ++ E F + ++L +D+
Sbjct: 369 LIPDINFNDAFENFALDFSREKKLLEGLDY 398
>gi|223890257 midline 2 isoform 1 [Homo sapiens]
Length = 735
Score = 125 bits (314), Expect = 7e-29
Identities = 97/390 (24%), Positives = 178/390 (45%), Gaps = 48/390 (12%)
Query: 17 MDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRF 76
M+ LE +L CPICLE+F P+ +LPC H+LC CA+ + +S +S T F
Sbjct: 21 METLESELTCPICLELFEDPL-LLPCAHSLCFSCAHRILVSSCSSGESIEPITA-----F 74
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES----SRPLHSKAEQHL-------- 124
+CP+CR+ + L+ G+ GL+RN+ ++NIID +++ S + P S+ E+
Sbjct: 75 QCPTCRYVISLNHRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSESRRERTYRPTTAMSS 134
Query: 125 ------MCEEHEEEKINIYCLSCEVPTCSLC--------KVFGAHKDCEVAPLPTIYKRQ 170
CE+ C++CEV C C K F +H+ V P+P + R
Sbjct: 135 ERIACQFCEQDPPRDAVKTCITCEVSYCDRCLRATHPNKKPFTSHR--LVEPVPDTHLR- 191
Query: 171 KKQDLTLLP------RLECSGTNTTYCSL-DLPSSSDPPILASQNTKI--IDSELSDGIA 221
+T L + C + C+L L +AS N + + L +
Sbjct: 192 ---GITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLT 248
Query: 222 MLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQ 281
LV N ++ + ++ ++CQ +E N+ + L + + L ++++RK + + +
Sbjct: 249 NLVKRNSELENQMAKLIQICQQVEVNTAMHEAKLMEECDELVEIIQQRKQMIAVKIKETK 308
Query: 282 EEKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELA 341
KL+++ + LE S+ L+ A ++E A +LQ AK + +V +
Sbjct: 309 VMKLRKLAQQVANCRQCLERSTVLINQAEHILKENDQARFLQSAKNIAERVAMATASSQV 368
Query: 342 GRPEPGY-ESMEQFTVRVEHVAEMLRTIDF 370
P+ + ++ E F + ++L +D+
Sbjct: 369 LIPDINFNDAFENFALDFSREKKLLEGLDY 398
>gi|47174859 tripartite motif-containing 46 [Homo sapiens]
Length = 759
Score = 124 bits (312), Expect = 1e-28
Identities = 109/403 (27%), Positives = 183/403 (45%), Gaps = 72/403 (17%)
Query: 3 FTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVF------- 55
FT L+ + SM N+EK+L+CP+C EM+ +P+V LPC HN+C+ CA +V
Sbjct: 10 FTSIMDALVRISTSMKNMEKELLCPVCQEMYKQPLV-LPCTHNVCQACAREVLGQQGYIG 68
Query: 56 -----------QASNPLWQS------------RGSTTVSSG-----GR-----------F 76
AS P +S R + SG GR F
Sbjct: 69 HGGDPSSEPTSPASTPSTRSPRLSRRTLPKPDRLDRLLKSGFGTYPGRKRGALHPQVIMF 128
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLMCEEHEEEKINI 136
CP+C+ +V L G+ GL RNL +E +++ Y+Q S ++C+ + +
Sbjct: 129 PCPACQGDVELGERGLAGLFRNLTLERVVERYRQSVS------VGGAILCQLCKPPPLEA 182
Query: 137 Y--CLSCEVPTCSLC-KVF---GAHKDCEVAPLPTIYKRQK-------KQDLTLLPRLEC 183
C C C+ C K+F G K LPT+ R K K+++T + C
Sbjct: 183 TKGCTECRATFCNECFKLFHPWGTQKAQHEPTLPTLSFRPKGLMCPDHKEEVTHYCKT-C 241
Query: 184 SGTNTTYCSLDLPSSSDP--PILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEVC 241
C + S P+L++ + +L+ + ++ D VQ I ++EE
Sbjct: 242 QRLVCQLCRVRRTHSGHKITPVLSAYQA--LKDKLTKSLTYILGNQDTVQTQICELEEAV 299
Query: 242 QTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLEA 301
+ E + ++ K+ ++Q L AVLEE++ LLQA+ Q+E+L R+ I+++ L+
Sbjct: 300 RHTEVSGQQAKEEVSQLVRGLGAVLEEKRASLLQAIEECQQERLARLSAQIQEHRSLLDG 359
Query: 302 SSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRP 344
S LV A + ++E ++Q AK+L N++ ++ RP
Sbjct: 360 SG-LVGYAQEVLKETDQPCFVQAAKQLHNRIARATEALQTFRP 401
>gi|27436877 tripartite motif-containing 59 [Homo sapiens]
Length = 403
Score = 88.2 bits (217), Expect = 1e-17
Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
Query: 17 MDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRF 76
M N E++L CPIC +F P V LPC H CR C ++ QAS + R
Sbjct: 1 MHNFEEELTCPICYSIFEDPRV-LPCSHTFCRNCLENILQASGNFYIWRPLRIP-----L 54
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLMCEEHEEEKINI 136
+CP+CR + G+ L N + II+ Y+QE + + C EH + +N+
Sbjct: 55 KCPNCRSITEIAPTGIESLPVNFALRAIIEKYQQEDHPDI-------VTCPEHYRQPLNV 107
Query: 137 YCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPRL 181
YCL + C C G H + L + Y ++K LL +L
Sbjct: 108 YCLLDKKLVCGHCLTIGQHHGHPIDDLQSAYLKEKDTPQKLLEQL 152
>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 86.7 bits (213), Expect = 3e-17
Identities = 81/329 (24%), Positives = 134/329 (40%), Gaps = 70/329 (21%)
Query: 20 LEKQ-LICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRFRC 78
++KQ L+C ICL+ + P V LPC H C +C + A S T+S C
Sbjct: 15 MDKQFLVCSICLDRYQCPKV-LPCLHTFCERCLQNYIPAQ--------SLTLS------C 59
Query: 79 PSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQ--------ESSRPLHSKAEQHLMCEEHE 130
P CR +L GV LQ N + ++++ +Q E PL A + L C HE
Sbjct: 60 PVCRQTSILPEQGVSALQNNFFISSLMEAMQQAPDGAHDPEDPHPLSVVAGRPLSCPNHE 119
Query: 131 EEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPRLECSGTNTTY 190
+ + YC +CE C C+ G H++ L + ++ K L +LE
Sbjct: 120 GKTMEFYCEACETAMCGECRA-GEHREHGTVLLRDVVEQHK---AALQRQLEAVRGR--- 172
Query: 191 CSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRR 250
LP +LS IA LV G + Q +++
Sbjct: 173 ----LP------------------QLSAAIA-LVGG-------------ISQQLQERKAE 196
Query: 251 QKQLLNQRFESLCAVLEERKGEL---LQALAREQEEKLQRVRGLIRQYGDHLEASSKLVE 307
++ FE L L++RK L L+ + +++ LQ +RQ +H+ +S E
Sbjct: 197 ALAQISAAFEDLEQALQQRKQALVSDLETICGAKQKVLQSQLDTLRQGQEHIGSSCSFAE 256
Query: 308 SAIQSMEEPQMALYLQQAKELINKVGAMS 336
A++ P++ L + +E + + A +
Sbjct: 257 QALRLGSAPEVLLVRKHMRERLAALAAQA 285
>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 86.7 bits (213), Expect = 3e-17
Identities = 81/329 (24%), Positives = 134/329 (40%), Gaps = 70/329 (21%)
Query: 20 LEKQ-LICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRFRC 78
++KQ L+C ICL+ + P V LPC H C +C + A S T+S C
Sbjct: 15 MDKQFLVCSICLDRYQCPKV-LPCLHTFCERCLQNYIPAQ--------SLTLS------C 59
Query: 79 PSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQ--------ESSRPLHSKAEQHLMCEEHE 130
P CR +L GV LQ N + ++++ +Q E PL A + L C HE
Sbjct: 60 PVCRQTSILPEQGVSALQNNFFISSLMEAMQQAPDGAHDPEDPHPLSVVAGRPLSCPNHE 119
Query: 131 EEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPRLECSGTNTTY 190
+ + YC +CE C C+ G H++ L + ++ K L +LE
Sbjct: 120 GKTMEFYCEACETAMCGECRA-GEHREHGTVLLRDVVEQHK---AALQRQLEAVRGR--- 172
Query: 191 CSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRR 250
LP +LS IA LV G + Q +++
Sbjct: 173 ----LP------------------QLSAAIA-LVGG-------------ISQQLQERKAE 196
Query: 251 QKQLLNQRFESLCAVLEERKGEL---LQALAREQEEKLQRVRGLIRQYGDHLEASSKLVE 307
++ FE L L++RK L L+ + +++ LQ +RQ +H+ +S E
Sbjct: 197 ALAQISAAFEDLEQALQQRKQALVSDLETICGAKQKVLQSQLDTLRQGQEHIGSSCSFAE 256
Query: 308 SAIQSMEEPQMALYLQQAKELINKVGAMS 336
A++ P++ L + +E + + A +
Sbjct: 257 QALRLGSAPEVLLVRKHMRERLAALAAQA 285
>gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens]
Length = 410
Score = 85.5 bits (210), Expect = 8e-17
Identities = 76/347 (21%), Positives = 140/347 (40%), Gaps = 75/347 (21%)
Query: 17 MDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQAS--NPLWQSRGSTTVSSGG 74
M+ LE+ L CPIC +F P V LPC HN C+KC + + S N LW+
Sbjct: 4 MELLEEDLTCPICCSLFDDPRV-LPCSHNFCKKCLEGILEGSVRNSLWRP---------A 53
Query: 75 RFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLMCEEHEEEKI 134
F+CP+CR E G+ LQ N ++ I++ Y + P + +C+ H + +
Sbjct: 54 PFKCPTCRKET--SATGINSLQVNYSLKGIVEKYNKIKISP------KMPVCKGHLGQPL 105
Query: 135 NIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPRLECSGTNTTYCSLD 194
NI+CL+ C +C G H T +CS++
Sbjct: 106 NIFCLTDMQLICGICATRGEH------------------------------TKHVFCSIE 135
Query: 195 LPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQL 254
+ + S D ++ R+ + T + Q + +S + K+
Sbjct: 136 DAYAQERDAFESLFQSFETWRRGDALS-------RLDTLETSKRKSLQLLTKDSDKVKEF 188
Query: 255 LNQRFESLCAVLEERKGELLQ-------ALAREQEEKLQRVRGLIRQYGDHLEASSKLVE 307
FE L L+++K E+L A+ + + ++ ++ ++++ + + +
Sbjct: 189 ----FEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQE-----QRMAFNIA 239
Query: 308 SAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQF 354
A + + EP ++LQQ +E K+ + + L P M+ F
Sbjct: 240 EAFKDVSEP--IVFLQQMQEFREKIKVIKETPLPPSNLPASPLMKNF 284
>gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 85.5 bits (210), Expect = 8e-17
Identities = 76/347 (21%), Positives = 140/347 (40%), Gaps = 75/347 (21%)
Query: 17 MDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQAS--NPLWQSRGSTTVSSGG 74
M+ LE+ L CPIC +F P V LPC HN C+KC + + S N LW+
Sbjct: 1 MELLEEDLTCPICCSLFDDPRV-LPCSHNFCKKCLEGILEGSVRNSLWRP---------A 50
Query: 75 RFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLMCEEHEEEKI 134
F+CP+CR E G+ LQ N ++ I++ Y + P + +C+ H + +
Sbjct: 51 PFKCPTCRKET--SATGINSLQVNYSLKGIVEKYNKIKISP------KMPVCKGHLGQPL 102
Query: 135 NIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPRLECSGTNTTYCSLD 194
NI+CL+ C +C G H T +CS++
Sbjct: 103 NIFCLTDMQLICGICATRGEH------------------------------TKHVFCSIE 132
Query: 195 LPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQL 254
+ + S D ++ R+ + T + Q + +S + K+
Sbjct: 133 DAYAQERDAFESLFQSFETWRRGDALS-------RLDTLETSKRKSLQLLTKDSDKVKEF 185
Query: 255 LNQRFESLCAVLEERKGELLQ-------ALAREQEEKLQRVRGLIRQYGDHLEASSKLVE 307
FE L L+++K E+L A+ + + ++ ++ ++++ + + +
Sbjct: 186 ----FEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQE-----QRMAFNIA 236
Query: 308 SAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQF 354
A + + EP ++LQQ +E K+ + + L P M+ F
Sbjct: 237 EAFKDVSEP--IVFLQQMQEFREKIKVIKETPLPPSNLPASPLMKNF 281
>gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 85.5 bits (210), Expect = 8e-17
Identities = 76/347 (21%), Positives = 140/347 (40%), Gaps = 75/347 (21%)
Query: 17 MDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQAS--NPLWQSRGSTTVSSGG 74
M+ LE+ L CPIC +F P V LPC HN C+KC + + S N LW+
Sbjct: 1 MELLEEDLTCPICCSLFDDPRV-LPCSHNFCKKCLEGILEGSVRNSLWRP---------A 50
Query: 75 RFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLMCEEHEEEKI 134
F+CP+CR E G+ LQ N ++ I++ Y + P + +C+ H + +
Sbjct: 51 PFKCPTCRKET--SATGINSLQVNYSLKGIVEKYNKIKISP------KMPVCKGHLGQPL 102
Query: 135 NIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPRLECSGTNTTYCSLD 194
NI+CL+ C +C G H T +CS++
Sbjct: 103 NIFCLTDMQLICGICATRGEH------------------------------TKHVFCSIE 132
Query: 195 LPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQL 254
+ + S D ++ R+ + T + Q + +S + K+
Sbjct: 133 DAYAQERDAFESLFQSFETWRRGDALS-------RLDTLETSKRKSLQLLTKDSDKVKEF 185
Query: 255 LNQRFESLCAVLEERKGELLQ-------ALAREQEEKLQRVRGLIRQYGDHLEASSKLVE 307
FE L L+++K E+L A+ + + ++ ++ ++++ + + +
Sbjct: 186 ----FEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQE-----QRMAFNIA 236
Query: 308 SAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQF 354
A + + EP ++LQQ +E K+ + + L P M+ F
Sbjct: 237 EAFKDVSEP--IVFLQQMQEFREKIKVIKETPLPPSNLPASPLMKNF 281
>gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 85.5 bits (210), Expect = 8e-17
Identities = 76/347 (21%), Positives = 140/347 (40%), Gaps = 75/347 (21%)
Query: 17 MDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQAS--NPLWQSRGSTTVSSGG 74
M+ LE+ L CPIC +F P V LPC HN C+KC + + S N LW+
Sbjct: 1 MELLEEDLTCPICCSLFDDPRV-LPCSHNFCKKCLEGILEGSVRNSLWRP---------A 50
Query: 75 RFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLMCEEHEEEKI 134
F+CP+CR E G+ LQ N ++ I++ Y + P + +C+ H + +
Sbjct: 51 PFKCPTCRKET--SATGINSLQVNYSLKGIVEKYNKIKISP------KMPVCKGHLGQPL 102
Query: 135 NIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPRLECSGTNTTYCSLD 194
NI+CL+ C +C G H T +CS++
Sbjct: 103 NIFCLTDMQLICGICATRGEH------------------------------TKHVFCSIE 132
Query: 195 LPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQL 254
+ + S D ++ R+ + T + Q + +S + K+
Sbjct: 133 DAYAQERDAFESLFQSFETWRRGDALS-------RLDTLETSKRKSLQLLTKDSDKVKEF 185
Query: 255 LNQRFESLCAVLEERKGELLQ-------ALAREQEEKLQRVRGLIRQYGDHLEASSKLVE 307
FE L L+++K E+L A+ + + ++ ++ ++++ + + +
Sbjct: 186 ----FEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQE-----QRMAFNIA 236
Query: 308 SAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQF 354
A + + EP ++LQQ +E K+ + + L P M+ F
Sbjct: 237 EAFKDVSEP--IVFLQQMQEFREKIKVIKETPLPPSNLPASPLMKNF 281
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
Length = 744
Score = 77.8 bits (190), Expect = 2e-14
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 27/163 (16%)
Query: 20 LEKQ-LICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRFRC 78
++KQ LIC ICLE + P V LPC H C +C + A S T+S C
Sbjct: 16 IDKQFLICSICLERYKNPKV-LPCLHTFCERCLQNYIPAH--------SLTLS------C 60
Query: 79 PSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQ------ESSRPLHS----KAEQHLMCEE 128
P CR +L GV LQ N + N++D+ ++ E S L + A + L C
Sbjct: 61 PVCRQTSILPEKGVAALQNNFFITNLMDVLQRTPGSNAEESSILETVTAVAAGKPLSCPN 120
Query: 129 HEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQK 171
H+ + YC SCE C C G H + PL + ++ K
Sbjct: 121 HDGNVMEFYCQSCETAMCREC-TEGEHAEHPTVPLKDVVEQHK 162
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
Length = 771
Score = 77.8 bits (190), Expect = 2e-14
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 27/163 (16%)
Query: 20 LEKQ-LICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRFRC 78
++KQ LIC ICLE + P V LPC H C +C + A S T+S C
Sbjct: 43 IDKQFLICSICLERYKNPKV-LPCLHTFCERCLQNYIPAH--------SLTLS------C 87
Query: 79 PSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQ------ESSRPLHS----KAEQHLMCEE 128
P CR +L GV LQ N + N++D+ ++ E S L + A + L C
Sbjct: 88 PVCRQTSILPEKGVAALQNNFFITNLMDVLQRTPGSNAEESSILETVTAVAAGKPLSCPN 147
Query: 129 HEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQK 171
H+ + YC SCE C C G H + PL + ++ K
Sbjct: 148 HDGNVMEFYCQSCETAMCREC-TEGEHAEHPTVPLKDVVEQHK 189
>gi|134288906 tripartite motif-containing 67 [Homo sapiens]
Length = 783
Score = 77.0 bits (188), Expect = 3e-14
Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 42/253 (16%)
Query: 118 SKAEQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTL 177
S A + C EHE E ++YC+SC P C LC G H EV PL ++K+ K Q
Sbjct: 295 STARKFPTCPEHEMENYSMYCVSCRTPVCYLCLEEGRHAKHEVKPLGAMWKQHKAQ---- 350
Query: 178 LPRLECSGTNTTYCSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQM 237
SQ + + + LV Q+
Sbjct: 351 ---------------------------LSQALNGVSDKAKEAKEFLV-----------QL 372
Query: 238 EEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGD 297
+ + Q I++N + L + ++L L +K +LL + +E+E KL+ V I
Sbjct: 373 KNILQQIQENGLDYEACLVAQCDALVDALTRQKAKLLTKVTKEREHKLKMVWDQINHCTL 432
Query: 298 HLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFTVR 357
L S+ L+E ++ ++E + +LQ + LI +V + + G EP + T+
Sbjct: 433 KLRQSTGLMEYCLEVIKENDPSGFLQISDALIKRVQVSQEQWVKGALEPKVSAEFDLTLD 492
Query: 358 VEHVAEMLRTIDF 370
E + + + +DF
Sbjct: 493 SEPLLQAIHQLDF 505
Score = 48.9 bits (115), Expect = 8e-06
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
Query: 67 STTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHL-- 124
S+ SS CP C LD G+ G QRN L+E I+ Y+Q + A +
Sbjct: 148 SSLSSSSSSITCPQCHRSASLDHRGLRGFQRNRLLEAIVQRYQQGRGAVPGTSAAAAVAI 207
Query: 125 --MCEEHEEEKINIYCLSCEVPTCSLCKV--------FGAHKDCEVAPLP 164
+C+ E C C+V CS C++ F H+ + P P
Sbjct: 208 CQLCDRTPPEPAATLCEQCDVLYCSACQLKCHPSRGPFAKHRLVQPPPPP 257
Score = 44.7 bits (104), Expect = 2e-04
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 20 LEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVF--------QASNPLWQSRGS 67
+E++L CP+C +F +P+ ILPC HN+C CA + PL SRGS
Sbjct: 1 MEEELKCPVCGSLFREPI-ILPCSHNVCLPCARTIAVQTPDGEQHLPQPLLLSRGS 55
>gi|55741632 fibronectin type III and SPRY domain containing 2 [Homo
sapiens]
Length = 749
Score = 76.3 bits (186), Expect = 5e-14
Identities = 64/275 (23%), Positives = 122/275 (44%), Gaps = 57/275 (20%)
Query: 110 QESSRPLHSKAEQHLMC-----EEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLP 164
+E+ R H +A + C EE EEE +++C++C+ P + KVF HK+ EV PL
Sbjct: 147 REAYRYTHGRASEEYECYVIPEEEDEEEAADVFCVTCKTPIRAFQKVFDEHKEHEVIPLN 206
Query: 165 TIYKRQKKQDLTLLPRLECSGTNTTYCSLDLPSSSDPPILASQNTKIIDSELSDGIAMLV 224
+ K + + +LE +II+ E
Sbjct: 207 EALESAKDEIHKNMYKLE--------------------------KQIIEME--------- 231
Query: 225 AGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEK 284
+EEV T+E+N +Q+Q + + L ++ E +QAL +++EK
Sbjct: 232 -------NFANHLEEVFITVEENFGKQEQNFESHYNEILETLAQKYEEKIQALGEKKKEK 284
Query: 285 LQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSK----VEL 340
L+ + G + G++L+ +L+E+ I+ M + +++ A + +++G K VE+
Sbjct: 285 LEALYGQLVSCGENLDTCKELMET-IEEMCHEEKVDFIKDAVAMADRLGKFLKTKTDVEI 343
Query: 341 AGRPEPGYESMEQFTVRVEHVAEMLRTIDFQPGAS 375
+ +PE E T+ V +++ +I+ P S
Sbjct: 344 SAQPE-----FEDQTLDFSDVEQLMGSINTIPAPS 373
>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
sapiens]
Length = 500
Score = 67.0 bits (162), Expect = 3e-11
Identities = 67/314 (21%), Positives = 125/314 (39%), Gaps = 43/314 (13%)
Query: 18 DNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRFR 77
++++++L CPICL+ F PV I C HN CR C + GG F
Sbjct: 4 EDIQEELTCPICLDYFQDPVSI-ECGHNFCRGCLH--------------RNWAPGGGPFP 48
Query: 78 CPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLMCEEHEEEKINIY 137
CP CRH L+ N + + + ++ P+ +C H E + ++
Sbjct: 49 CPECRHP-----SAPAALRPNWALARLTEKTQRRRLGPVPPG-----LCGRH-WEPLRLF 97
Query: 138 CLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPRLECSGTNTTYCSLDLPS 197
C + P C +C+ H+ +AP+ ++ + + + L L
Sbjct: 98 CEDDQRPVCLVCRESQEHQTHAMAPIDEAFESYRTGNFD----IHVDEWKRRLIRLLLYH 153
Query: 198 SSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQ 257
S Q K++ S+ + LVA +V + + +D + Q+ ++
Sbjct: 154 S-------KQEEKLLKSQRN-----LVAKMKKVMHLQDVEVKNATQWKDKIKSQRMRIST 201
Query: 258 RFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQ 317
F L L E + LQ L +E+EE +++ + + + KL+ + + P
Sbjct: 202 EFSKLHNFLVEEEDLFLQRLNKEEEETKKKLNENTLKLNQTIASLKKLILEVGEKSQAPT 261
Query: 318 MALYLQQAKELINK 331
+ L LQ KE++ +
Sbjct: 262 LEL-LQNPKEVLTR 274
>gi|89886468 fibronectin type III and SPRY domain containing 1-like
isoform 1 [Homo sapiens]
Length = 498
Score = 67.0 bits (162), Expect = 3e-11
Identities = 40/153 (26%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 220 IAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAR 279
I+ L ND +Q I + + +++NS L++ F+SL ++L+E K ++ + +
Sbjct: 12 ISTLANKNDEIQNFIDTLHHTLKGVQENSSNILSELDEEFDSLYSILDEVKESMINCIKQ 71
Query: 280 EQEEKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVE 339
EQ K Q ++ I Q + LE S +L+E A +S++ + + + A+++ ++V S
Sbjct: 72 EQARKSQELQSQISQCNNALENSEELLEFATRSLDIKEPEEFSKAARQIKDRVTMASAFR 131
Query: 340 LAGRPEPGYESMEQFTVRVEHVAEMLRTIDFQP 372
L+ +P+ ++M V +ML+T+ F P
Sbjct: 132 LSLKPKVS-DNMTHLMVDFSQERQMLQTLKFLP 163
>gi|223718222 fibronectin type III and SPRY domain containing 1-like
isoform 3 [Homo sapiens]
Length = 530
Score = 67.0 bits (162), Expect = 3e-11
Identities = 40/153 (26%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 220 IAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAR 279
I+ L ND +Q I + + +++NS L++ F+SL ++L+E K ++ + +
Sbjct: 44 ISTLANKNDEIQNFIDTLHHTLKGVQENSSNILSELDEEFDSLYSILDEVKESMINCIKQ 103
Query: 280 EQEEKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVE 339
EQ K Q ++ I Q + LE S +L+E A +S++ + + + A+++ ++V S
Sbjct: 104 EQARKSQELQSQISQCNNALENSEELLEFATRSLDIKEPEEFSKAARQIKDRVTMASAFR 163
Query: 340 LAGRPEPGYESMEQFTVRVEHVAEMLRTIDFQP 372
L+ +P+ ++M V +ML+T+ F P
Sbjct: 164 LSLKPKVS-DNMTHLMVDFSQERQMLQTLKFLP 195
>gi|145275183 tripartite motif protein 34 isoform 3 [Homo sapiens]
Length = 270
Score = 65.9 bits (159), Expect = 6e-11
Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 51/286 (17%)
Query: 19 NLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRFRC 78
N+++++ CPICLE+ ++P + L C H+LCR C + S S GG+ C
Sbjct: 8 NVQEEVTCPICLELLTEP-LSLDCGHSLCRAC----------ITVSNKEAVTSMGGKSSC 56
Query: 79 PSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLMCEEHEEEKINIYC 138
P C + LQ N + NI++ K+ P + K +C +H EK+ ++C
Sbjct: 57 PVCGISYSFEH-----LQANQHLANIVERLKEVKLSPDNGKKRD--LC-DHHGEKLLLFC 108
Query: 139 LSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPRLECSGTNTTYCSLDLPSS 198
C LC+ H+ ++K +++ +L RL+ D
Sbjct: 109 KEDRKVICWLCERSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEAD---- 164
Query: 199 SDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQR 258
I E + + R+Q Q+ + N+ Q++L QR
Sbjct: 165 -------------IREEKTSWKYQVQTERQRIQTEFDQLRSIL-----NNEEQREL--QR 204
Query: 259 FESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLEASSK 304
LEE + + L A E E++L + + L+R+ +E S+
Sbjct: 205 -------LEEEEKKTLDKFA-EAEDELVQQKQLVRELISDVECRSQ 242
>gi|51477687 tripartite motif protein 34 isoform 1 [Homo sapiens]
Length = 488
Score = 65.9 bits (159), Expect = 6e-11
Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 51/286 (17%)
Query: 19 NLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRFRC 78
N+++++ CPICLE+ ++P + L C H+LCR C + S S GG+ C
Sbjct: 8 NVQEEVTCPICLELLTEP-LSLDCGHSLCRAC----------ITVSNKEAVTSMGGKSSC 56
Query: 79 PSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLMCEEHEEEKINIYC 138
P C + LQ N + NI++ K+ P + K +C +H EK+ ++C
Sbjct: 57 PVCGISYSFEH-----LQANQHLANIVERLKEVKLSPDNGKKRD--LC-DHHGEKLLLFC 108
Query: 139 LSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPRLECSGTNTTYCSLDLPSS 198
C LC+ H+ ++K +++ +L RL+ D
Sbjct: 109 KEDRKVICWLCERSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEAD---- 164
Query: 199 SDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQR 258
I E + + R+Q Q+ + N+ Q++L QR
Sbjct: 165 -------------IREEKTSWKYQVQTERQRIQTEFDQLRSIL-----NNEEQREL--QR 204
Query: 259 FESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLEASSK 304
LEE + + L A E E++L + + L+R+ +E S+
Sbjct: 205 -------LEEEEKKTLDKFA-EAEDELVQQKQLVRELISDVECRSQ 242
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,595,219
Number of Sequences: 37866
Number of extensions: 784016
Number of successful extensions: 6359
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 384
Number of HSP's that attempted gapping in prelim test: 5255
Number of HSP's gapped (non-prelim): 1234
length of query: 400
length of database: 18,247,518
effective HSP length: 104
effective length of query: 296
effective length of database: 14,309,454
effective search space: 4235598384
effective search space used: 4235598384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.