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Search of human proteins with 78000183
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|78000183 ribosomal protein L14 [Homo sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|78000183 ribosomal protein L14 [Homo sapiens] 424 e-119
gi|78000181 ribosomal protein L14 [Homo sapiens] 424 e-119
gi|4885381 histone cluster 1, H1b [Homo sapiens] 51 6e-07
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 49 4e-06
gi|4885379 histone cluster 1, H1e [Homo sapiens] 49 4e-06
gi|30795231 brain abundant, membrane attached signal protein 1 [... 44 8e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 42 3e-04
gi|4885375 histone cluster 1, H1c [Homo sapiens] 41 7e-04
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|19111150 angiomotin isoform 2 [Homo sapiens] 40 0.001
gi|166064029 angiomotin isoform 1 [Homo sapiens] 40 0.001
gi|16579885 ribosomal protein L4 [Homo sapiens] 40 0.001
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 0.002
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 40 0.002
gi|4885377 histone cluster 1, H1d [Homo sapiens] 40 0.002
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 39 0.003
gi|55956788 nucleolin [Homo sapiens] 39 0.003
gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [H... 39 0.004
gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [H... 39 0.004
gi|104526627 triadin [Homo sapiens] 39 0.004
gi|24497554 homeobox A13 [Homo sapiens] 38 0.006
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 37 0.010
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 37 0.010
gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo ... 37 0.010
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 37 0.017
gi|146219841 PNMA-like 2 [Homo sapiens] 37 0.017
gi|91208420 bassoon protein [Homo sapiens] 36 0.022
gi|4885371 H1 histone family, member 0 [Homo sapiens] 36 0.028
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 35 0.048
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 35 0.048
>gi|78000183 ribosomal protein L14 [Homo sapiens]
Length = 215
Score = 424 bits (1090), Expect = e-119
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDF 60
MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDF
Sbjct: 1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDF 60
Query: 61 ILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRN 120
ILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRN
Sbjct: 61 ILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRN 120
Query: 121 RIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPA 180
RIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPA
Sbjct: 121 RIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPA 180
Query: 181 QKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA 215
QKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA
Sbjct: 181 QKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA 215
>gi|78000181 ribosomal protein L14 [Homo sapiens]
Length = 215
Score = 424 bits (1090), Expect = e-119
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDF 60
MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDF
Sbjct: 1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDF 60
Query: 61 ILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRN 120
ILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRN
Sbjct: 61 ILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRN 120
Query: 121 RIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPA 180
RIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPA
Sbjct: 121 RIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPA 180
Query: 181 QKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA 215
QKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA
Sbjct: 181 QKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA 215
>gi|4885381 histone cluster 1, H1b [Homo sapiens]
Length = 226
Score = 51.2 bits (121), Expect = 6e-07
Identities = 36/87 (41%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 128 KKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQK 187
KK +KAA K + KK P AAA AK P KK AA+K A K PA+ +
Sbjct: 140 KKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSP-KKAKAAAKPKKATKSPAKPKAVKP 198
Query: 188 AAPAPKAQKGQKAPAQKAPAPKASGKK 214
A PKA K + A + A A KA+ KK
Sbjct: 199 KAAKPKAAKPKAAKPKAAKAKKAAAKK 225
Score = 43.1 bits (100), Expect = 2e-04
Identities = 38/101 (37%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 117 KMRNRIIKNEVK-KLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPA 175
K+ + E K K +KA KA KK G T A AA AK KK +KK A
Sbjct: 109 KLNKKAASGEAKPKAKKAGAAKA--KKPAGA--TPKKAKKAAGAKKAVKKTPKKAKKPAA 164
Query: 176 QKVPAQKATGQKAAPAPKAQKGQKAPAQ-KAPAPKASGKKA 215
V + +KA A K +K K+PA+ KA PKA+ KA
Sbjct: 165 AGVKKVAKSPKKAKAAAKPKKATKSPAKPKAVKPKAAKPKA 205
Score = 39.3 bits (90), Expect = 0.003
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 146 TKGTAAAA-------AAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQ 198
TKGT A+ AA+ AK AKK AA K PA AT +KA A A+K
Sbjct: 99 TKGTGASGSFKLNKKAASGEAKPKAKKAGAAKAKKPA------GATPKKAKKAAGAKKAV 152
Query: 199 KAPAQKAPAPKASGKK 214
K +KA P A+G K
Sbjct: 153 KKTPKKAKKPAAAGVK 168
Score = 38.9 bits (89), Expect = 0.003
Identities = 41/118 (34%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 93 KKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKA--PGTKGTA 150
KK + E K K + KAKK K K +K +PKKA P G
Sbjct: 112 KKAASGEAKPKAK---KAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVK 168
Query: 151 AAAA----AAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQK 204
A A AAAK + A KA K KA KAA PKA K +KA A+K
Sbjct: 169 KVAKSPKKAKAAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAA-KPKAAKAKKAAAKK 225
Score = 37.4 bits (85), Expect = 0.010
Identities = 40/115 (34%), Positives = 46/115 (40%), Gaps = 13/115 (11%)
Query: 85 KWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAP 144
K A + K A +KAK + V K K + VKK+ K SPKKA
Sbjct: 125 KAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAK------SPKKAK 178
Query: 145 GTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQK 199
AAA A K PAK A KA K KA KAA A KA +K
Sbjct: 179 ------AAAKPKKATKSPAKP-KAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK 226
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 48.5 bits (114), Expect = 4e-06
Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 131 QKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAP 190
QKA A P+KAP + A A A A I A S+KA A +KA+ A P
Sbjct: 440 QKAPAASAPPRKAPAVPAPSQKAPAVPAPSQKAPAIPAPSRKASAASASPRKASAVPAPP 499
Query: 191 APKAQKGQKAPA-----QKAPAPKASGKKA 215
QKAP+ QKA +P A KK+
Sbjct: 500 QKTPPPSQKAPSVPTIPQKAVSPTAPKKKS 529
Score = 47.0 bits (110), Expect = 1e-05
Identities = 31/79 (39%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 133 AALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPA- 191
A+ K P AP K AA+A A VPA A + AP+QK PA A +KA+ A
Sbjct: 427 ASSWKPPPGLAPPQKAPAASAPPRKAPAVPAPSQKAPAVPAPSQKAPAIPAPSRKASAAS 486
Query: 192 --PKAQKGQKAPAQKAPAP 208
P+ AP QK P P
Sbjct: 487 ASPRKASAVPAPPQKTPPP 505
Score = 41.6 bits (96), Expect = 5e-04
Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 127 VKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQ 186
V + QK + AS K P G A A AA+ P K A + AP+QK PA A Q
Sbjct: 416 VDQSQKLPAVPASSWKPP--PGLAPPQKAPAASAPPRK---APAVPAPSQKAPAVPAPSQ 470
Query: 187 KAAPAPKAQKGQKAPAQKAPAPKASGKKA 215
KA P AP++KA A AS +KA
Sbjct: 471 KAPAIP-------APSRKASAASASPRKA 492
Score = 41.2 bits (95), Expect = 7e-04
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 132 KAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPA 191
KA L +K P ++ A A +A +KAPA P+QKA A PA
Sbjct: 411 KAPFLVDQSQKLPAVPASSWKPPPGLAPPQKAPAASAPPRKAPAVPAPSQKA---PAVPA 467
Query: 192 PKAQKGQKAPAQKAPAPKASGKKA 215
P QKAPA AP+ KAS A
Sbjct: 468 P----SQKAPAIPAPSRKASAASA 487
Score = 35.0 bits (79), Expect = 0.048
Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 131 QKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAP 190
QKA + KAP + A A+ A +KAPA P +KA A P
Sbjct: 400 QKAPSGLVTSCKAPFLVDQSQKLPAVPASSWKPPPGLAPPQKAPAASAPPRKA---PAVP 456
Query: 191 APKAQ-KGQKAPAQKAPAPKASGKKA 215
AP + AP+QKAPA A +KA
Sbjct: 457 APSQKAPAVPAPSQKAPAIPAPSRKA 482
Score = 32.7 bits (73), Expect = 0.24
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 141 KKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAP-----AQKVPAQKATGQKAAPA---P 192
++ G G+ K P+ +T+ KAP +QK+PA A+ K P P
Sbjct: 382 REKAGPMGSHQGPGPPPCQKAPSGLVTSC--KAPFLVDQSQKLPAVPASSWKPPPGLAPP 439
Query: 193 KAQKGQKAPAQKAPAPKASGKKA 215
+ AP +KAPA A +KA
Sbjct: 440 QKAPAASAPPRKAPAVPAPSQKA 462
Score = 30.8 bits (68), Expect = 0.91
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 131 QKAALLKASPKK-----APGTKGTAAAAAAAAAAKVPAKKI--TAASKK-----APAQKV 178
+KA+ ASP+K AP K + A + +P K + TA KK AP+QK
Sbjct: 480 RKASAASASPRKASAVPAPPQKTPPPSQKAPSVPTIPQKAVSPTAPKKKSLLLPAPSQKA 539
Query: 179 PAQKATGQKAAPAPKAQKGQ 198
T + A +P A +G+
Sbjct: 540 LPTSPTEYQMALSPPASRGK 559
>gi|4885379 histone cluster 1, H1e [Homo sapiens]
Length = 219
Score = 48.5 bits (114), Expect = 4e-06
Identities = 43/117 (36%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 93 KKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAAA 152
KK + E K K K AK + + KK AA K S KK P AA
Sbjct: 109 KKAASGEAKPKAK-----KAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAA 163
Query: 153 AAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPK 209
AA A AK P K A KKAP K PA+ + A PK K + A +KA A K
Sbjct: 164 AAGAKKAKSPKKAKAAKPKKAP--KSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKK 218
Score = 46.6 bits (109), Expect = 2e-05
Identities = 38/96 (39%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 131 QKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVP----------- 179
+KAA +A PK G A A A AAK P K AA+ K A+K P
Sbjct: 109 KKAASGEAKPKAKKA--GAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAG 166
Query: 180 AQKATGQKAAPAPKAQKGQKAPAQ-KAPAPKASGKK 214
A+KA K A A K +K K+PA+ KA PKA+ K
Sbjct: 167 AKKAKSPKKAKAAKPKKAPKSPAKAKAVKPKAAKPK 202
Score = 45.8 bits (107), Expect = 3e-05
Identities = 39/106 (36%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 117 KMRNRIIKNEVK-KLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPA 175
K+ + E K K +KA KA KK G A AA K AKK +KK PA
Sbjct: 106 KLNKKAASGEAKPKAKKAGAAKA--KKPAGAAKKPKKATGAATPKKSAKKTPKKAKK-PA 162
Query: 176 QKVPAQKATGQKAAPAPKAQKGQKAPAQ------KAPAPKASGKKA 215
A+KA K A A K +K K+PA+ KA PK + KA
Sbjct: 163 AAAGAKKAKSPKKAKAAKPKKAPKSPAKAKAVKPKAAKPKTAKPKA 208
Score = 37.4 bits (85), Expect = 0.010
Identities = 30/77 (38%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 146 TKGTAAAA-------AAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQ 198
TKGT A+ AA+ AK AKK AA K PA K A P A+K
Sbjct: 96 TKGTGASGSFKLNKKAASGEAKPKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTP 155
Query: 199 KAPAQKAPAPKASGKKA 215
K K PA A KKA
Sbjct: 156 KKA--KKPAAAAGAKKA 170
Score = 28.5 bits (62), Expect = 4.5
Identities = 34/102 (33%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 92 AKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAA 151
AKK A + K + K + K KK +K A A KKA K A
Sbjct: 120 AKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAA-AGAKKAKSPK-KAK 177
Query: 152 AAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPK 193
AA A K PA K A KA K KA K A A K
Sbjct: 178 AAKPKKAPKSPA-KAKAVKPKAAKPKTAKPKAAKPKKAAAKK 218
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 44.3 bits (103), Expect = 8e-05
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 13/124 (10%)
Query: 92 AKKIEARERKAKMTDFDRFKVMK------AKKMRNRIIKNEVKKLQKAALLKASPKKAP- 144
A+ EA+E K K K + A + K E +K + AA KA P KAP
Sbjct: 46 AEPAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPE 105
Query: 145 ------GTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQ 198
G A AA AA PA+ A+ + P+++ K T AAPA + K
Sbjct: 106 QEQAAPGPAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETKSD 165
Query: 199 KAPA 202
APA
Sbjct: 166 GAPA 169
Score = 33.1 bits (74), Expect = 0.18
Identities = 33/81 (40%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 137 KASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAP------ 190
KA K+ G K AAA A A+ P K AA KA K P Q ++AAP
Sbjct: 65 KAEEKE--GEKDAAAAKEEAPKAE-PEKTEGAAEAKAEPPKAPEQ----EQAAPGPAAGG 117
Query: 191 -APKAQKGQKAPAQKAPAPKA 210
APKA + APA+ A AP A
Sbjct: 118 EAPKAAEAAAAPAESA-APAA 137
Score = 28.9 bits (63), Expect = 3.5
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 124 KNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQ----KVP 179
+ E KK + A A K+ G + + ++ AA P+ K T A+ +AP+ + P
Sbjct: 145 EGEPKKTEAPAAPAAQETKSDGAPASDSKPGSSEAA--PSSKETPAATEAPSSTPKAQGP 202
Query: 180 AQKATGQKAAPAPKAQKGQ 198
A A K AP A Q
Sbjct: 203 AASAEEPKPVEAPAANSDQ 221
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 42.4 bits (98), Expect = 3e-04
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 134 ALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAAS-KKAPAQKVP-----AQKATGQK 187
A++ SPKKAP T T AA + + +T S KKAPA P + G
Sbjct: 1406 AVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDP 1465
Query: 188 AAPAPKAQKGQKAPAQKAPAPKASGKKA 215
PA ++ PA K A +S KKA
Sbjct: 1466 TLPAVTPPSPKEPPAPKQVATSSSPKKA 1493
Score = 34.7 bits (78), Expect = 0.063
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 134 ALLKASPKKAPGTKG-TAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAP 192
A + + K P KG TA A A ITA ++K P K AT P P
Sbjct: 1663 ATVPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTK--KSSATSPPICPDP 1720
Query: 193 KAQKGQKAP-AQKAPAP 208
A+ G K P + APAP
Sbjct: 1721 SAKNGSKGPLSTVAPAP 1737
Score = 33.9 bits (76), Expect = 0.11
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 140 PKKAPGTKGTAAAAAAAAAAKVPAK-KITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQ 198
PK+ P T A A + + P K + T A K PA P T A P P + G
Sbjct: 896 PKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATP-PSPKGGP 954
Query: 199 KAPAQK-APAPKAS 211
P+ K AP P A+
Sbjct: 955 ATPSPKWAPTPPAA 968
Score = 33.5 bits (75), Expect = 0.14
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 134 ALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAP--AQKVPAQKATGQKAAPA 191
A+ SPK +P A+ AA P+ K + A+ P A PA K PA
Sbjct: 1013 AVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPA 1072
Query: 192 PKAQKGQKA-PAQKAPAPK 209
+ KG PA P+PK
Sbjct: 1073 TPSLKGAPTPPAATPPSPK 1091
Score = 33.5 bits (75), Expect = 0.14
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 21/94 (22%)
Query: 134 ALLKASPKKAPGTKGTA----AAAAAAAAAKVPAKKITAASKKA---PAQKVPAQKAT-- 184
A++ +SPK+ P T + A A + K PA T A K+A PA VP+ K T
Sbjct: 1507 AVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPA---TLAPKEALIPPAMTVPSPKKTPA 1563
Query: 185 --GQKAAPA-PKAQKGQKAPA------QKAPAPK 209
K APA P +++ PA + AP+PK
Sbjct: 1564 IPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPK 1597
Score = 32.3 bits (72), Expect = 0.31
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 139 SPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPA-PKAQKG 197
+PK+AP T+++ A A P K I A+ A PA K PA P +
Sbjct: 904 APKQAPALSMTSSSPKKARATPAP-KGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWA 962
Query: 198 QKAPAQKAPAPK 209
PA P+PK
Sbjct: 963 PTPPAATPPSPK 974
Score = 32.3 bits (72), Expect = 0.31
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 128 KKLQKAALLKASPKKA---PGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKAT 184
K+ ++ +SPKKA P KG A+ + A PA + K PA P T
Sbjct: 906 KQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPA-ATPPSPKGGPATPSPKWAPT 964
Query: 185 GQKAAPAPKAQKGQKAPAQK-APAPKAS 211
A P P + G P+ K AP P A+
Sbjct: 965 PPAATP-PSPKGGPATPSPKGAPTPPAA 991
Score = 31.2 bits (69), Expect = 0.70
Identities = 24/74 (32%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 139 SPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQ 198
SPK P T A AA K A A PA K PA + KG
Sbjct: 949 SPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGA 1008
Query: 199 KA-PAQKAPAPKAS 211
PA P+PK S
Sbjct: 1009 PTPPAVTPPSPKGS 1022
Score = 30.4 bits (67), Expect = 1.2
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 132 KAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKI--TAASKKAPAQKVPAQKATGQKAA 189
K +SPKKAP T A A K++ T +S++ P + A
Sbjct: 1482 KQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPAT 1541
Query: 190 PAPKAQKGQKAPAQKAPAPK 209
APK + PA P+PK
Sbjct: 1542 LAPK--EALIPPAMTVPSPK 1559
Score = 30.0 bits (66), Expect = 1.5
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 139 SPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQ 198
SP P + + + A+ K+ A + ASK PA+K P APAP++
Sbjct: 1639 SPPVTPSSLKDSPTSPASVTCKMGAT-VPQASKGLPAKKGPTALKE-VLVAPAPESTPII 1696
Query: 199 KAPAQKAPAPKAS 211
AP +K P K S
Sbjct: 1697 TAPTRKGPQTKKS 1709
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 130 LQKAALLKASPKKAPGTKGTAAAAAAAA-----------AAKVPAKKITAASKKAPAQKV 178
+ AAL ASP AP KGT +++A A ++ P +T+ A A+
Sbjct: 111 ISPAALALASPMIAPTLKGTPSSSAPLALVALAPHSVQKSSAFPPNLLTSPPSVAVAESG 170
Query: 179 PAQKATGQKAAPAPKAQKGQKAPAQKAPAPKAS 211
+ A PK K P++ P PK +
Sbjct: 171 SVITLSAPIAPSEPKTNL-NKVPSEVVPNPKGT 202
Score = 29.6 bits (65), Expect = 2.0
Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 139 SPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPA--PKAQK 196
SPK P T A AA K A A PA K +PA P +
Sbjct: 972 SPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKG 1031
Query: 197 GQKAPAQKAPAPKAS 211
PA P+PK S
Sbjct: 1032 ASTPPAATPPSPKGS 1046
Score = 29.6 bits (65), Expect = 2.0
Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 132 KAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPA 191
K L PK AP T + A P K + PA P+ K G A P+
Sbjct: 1137 KGGLATPPPKGAPTTPAATPPSPKGGLATPPPK----GAPTTPAATPPSPK--GGLATPS 1190
Query: 192 PKAQKGQKAPAQKAPAPK 209
PK PA P+PK
Sbjct: 1191 PKG--APTTPAATPPSPK 1206
Score = 29.6 bits (65), Expect = 2.0
Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 132 KAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKI-TAASKKAPAQK----VPAQKATGQ 186
K L SPK AP T + A P K T + P+ K P K
Sbjct: 1229 KGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPN 1288
Query: 187 KAAPAPKAQKGQKA--PAQKAPAPKAS 211
A P + KG A P + AP P A+
Sbjct: 1289 PAVVTPPSPKGGPATSPPKGAPTPPAA 1315
Score = 29.3 bits (64), Expect = 2.6
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 133 AALLKASPKKAPGT---KG--TAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQK 187
A + SPK P T KG T AA + P + PA P+ K T
Sbjct: 1290 AVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTL 1349
Query: 188 AAPAPKAQKGQKAPAQK-APAPKAS 211
A P ++ G P+ K P P A+
Sbjct: 1350 PATTPSSKGGPTTPSSKEGPTPPAA 1374
Score = 27.7 bits (60), Expect = 7.7
Identities = 28/97 (28%), Positives = 30/97 (30%), Gaps = 18/97 (18%)
Query: 132 KAALLKASPKKAPGT--------KGTAAAAAAAAAAKVPAKK--------ITAASKKAPA 175
K L SPK AP T KG A + A PA T + K AP
Sbjct: 1183 KGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPT 1242
Query: 176 QKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKASG 212
PA K PA KG P P G
Sbjct: 1243 --TPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGG 1277
>gi|4885375 histone cluster 1, H1c [Homo sapiens]
Length = 213
Score = 41.2 bits (95), Expect = 7e-04
Identities = 35/99 (35%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 117 KMRNRIIKNEVK-KLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPA 175
K+ + E K K++KA K PKK G AA A K AKK +KK A
Sbjct: 106 KLNKKAASGEAKPKVKKAGGTK--PKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAA 163
Query: 176 QKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKK 214
V + A K A K +K K+ A KA PKA+ K
Sbjct: 164 ATVTKKVAKSPKKAKVAKPKKAAKS-AAKAVKPKAAKPK 201
Score = 35.4 bits (80), Expect = 0.037
Identities = 38/98 (38%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 111 KVMKAKKMRNRIIKNEVKKLQKAA---LLKASPKKAPG-TKGTAAAAAAAAAAKVPAKKI 166
KV KA + + KK +KAA K S KK P K AAA AK P K
Sbjct: 119 KVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAK 178
Query: 167 TAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQK 204
A KKA A KA KAA PK K +KA +K
Sbjct: 179 VAKPKKAAKS---AAKAVKPKAA-KPKVVKPKKAAPKK 212
>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
Length = 625
Score = 40.4 bits (93), Expect = 0.001
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 15/94 (15%)
Query: 109 RFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITA 168
R K+ + + R+RI++ E ++L T + AAAAAAAAA P+ ++
Sbjct: 159 RAKLQQCRAERDRIMREEKRRL--------------FTPLSPAAAAAAAAASAPSAGSSS 204
Query: 169 ASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPA 202
+ A PA +A +KA+P+P + + Q PA
Sbjct: 205 SCSSASLPASPAPRA-ARKASPSPSSARTQPPPA 237
>gi|19111150 angiomotin isoform 2 [Homo sapiens]
Length = 675
Score = 40.4 bits (93), Expect = 0.001
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 133 AALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQ--KVPAQKATGQKAAP 190
AA + + A AAAA AAAAA PA A+ +PA ++PA + AA
Sbjct: 491 AATITTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAV 550
Query: 191 APKAQKG---QKAPAQKAPAP 208
AP A Q APA AP P
Sbjct: 551 APSAAAAAAVQVAPAAPAPVP 571
Score = 36.2 bits (82), Expect = 0.022
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 133 AALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAP 192
A A+P A AAA AAA + A +I AA+ A A V A AP
Sbjct: 505 AVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAVAPSAAAAAAVQVAP 564
Query: 193 KAQKGQKAPA-QKAPAPKASGKKA 215
A APA PAP A+ A
Sbjct: 565 AAPAPVPAPALVPVPAPAAAQASA 588
Score = 32.0 bits (71), Expect = 0.41
Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 133 AALLKASPKKAPGTKGTAAAAA----AAAAAKVPAKKITAASKKAPAQKVPAQKATGQKA 188
AA+ A+ + P A+AAA AAAAA V A APA A Q +
Sbjct: 528 AAVSPAAAGQIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQAS 587
Query: 189 APAPKAQKGQKAPAQKAPAP 208
APA + Q APA AP P
Sbjct: 588 APA-QTQAPTSAPA-VAPTP 605
Score = 30.4 bits (67), Expect = 1.2
Identities = 23/76 (30%), Positives = 27/76 (35%)
Query: 132 KAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPA 191
K A + AP AAA A AA + + AA A PA A A A
Sbjct: 465 KTAAVAPISVPAPVAAAATAAAITATAATITTTMVAAAPVAVAAAAAPAAAAAPSPATAA 524
Query: 192 PKAQKGQKAPAQKAPA 207
A A A + PA
Sbjct: 525 ATAAAVSPAAAGQIPA 540
Score = 29.6 bits (65), Expect = 2.0
Identities = 27/90 (30%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 129 KLQKAALLKASPKKAPGTKGTAAAAAAAAA-------AKVPAKKITAASKKAPAQKVPAQ 181
++ AA + ++ AP AA A AA A VP AA APAQ
Sbjct: 537 QIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPT 596
Query: 182 KATGQKAAPAP---KAQKGQKAPAQKAPAP 208
A PAP A + PA A P
Sbjct: 597 SAPAVAPTPAPTPTPAVAQAEVPASPATGP 626
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 40.4 bits (93), Expect = 0.001
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 133 AALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQ--KVPAQKATGQKAAP 190
AA + + A AAAA AAAAA PA A+ +PA ++PA + AA
Sbjct: 900 AATITTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAV 959
Query: 191 APKAQKG---QKAPAQKAPAP 208
AP A Q APA AP P
Sbjct: 960 APSAAAAAAVQVAPAAPAPVP 980
Score = 36.2 bits (82), Expect = 0.022
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 133 AALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAP 192
A A+P A AAA AAA + A +I AA+ A A V A AP
Sbjct: 914 AVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAVAPSAAAAAAVQVAP 973
Query: 193 KAQKGQKAPA-QKAPAPKASGKKA 215
A APA PAP A+ A
Sbjct: 974 AAPAPVPAPALVPVPAPAAAQASA 997
Score = 32.0 bits (71), Expect = 0.41
Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 133 AALLKASPKKAPGTKGTAAAAA----AAAAAKVPAKKITAASKKAPAQKVPAQKATGQKA 188
AA+ A+ + P A+AAA AAAAA V A APA A Q +
Sbjct: 937 AAVSPAAAGQIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQAS 996
Query: 189 APAPKAQKGQKAPAQKAPAP 208
APA + Q APA AP P
Sbjct: 997 APA-QTQAPTSAPA-VAPTP 1014
Score = 30.4 bits (67), Expect = 1.2
Identities = 23/76 (30%), Positives = 27/76 (35%)
Query: 132 KAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPA 191
K A + AP AAA A AA + + AA A PA A A A
Sbjct: 874 KTAAVAPISVPAPVAAAATAAAITATAATITTTMVAAAPVAVAAAAAPAAAAAPSPATAA 933
Query: 192 PKAQKGQKAPAQKAPA 207
A A A + PA
Sbjct: 934 ATAAAVSPAAAGQIPA 949
Score = 29.6 bits (65), Expect = 2.0
Identities = 27/90 (30%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 129 KLQKAALLKASPKKAPGTKGTAAAAAAAAA-------AKVPAKKITAASKKAPAQKVPAQ 181
++ AA + ++ AP AA A AA A VP AA APAQ
Sbjct: 946 QIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPT 1005
Query: 182 KATGQKAAPAP---KAQKGQKAPAQKAPAP 208
A PAP A + PA A P
Sbjct: 1006 SAPAVAPTPAPTPTPAVAQAEVPASPATGP 1035
>gi|16579885 ribosomal protein L4 [Homo sapiens]
Length = 427
Score = 40.4 bits (93), Expect = 0.001
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 31/133 (23%)
Query: 103 KMTDFDRFKVMKA-----------KKMRNRIIK-NEVKKLQKAALLKASPKKAPGTKGTA 150
KM + D +++K+ KK+ R++K N +K L+ +LK +P + T
Sbjct: 283 KMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLR--IMLKLNPYAKTMRRNTI 340
Query: 151 AAAA----------AAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQK---- 196
A AAAAA + AK + K A A K P G+KAA K QK
Sbjct: 341 LRQARNHKLRVDKAAAAAAALQAK---SDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLV 397
Query: 197 GQKAPAQKAPAPK 209
G+KA A K PAP+
Sbjct: 398 GKKAAATKKPAPE 410
Score = 31.6 bits (70), Expect = 0.53
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 126 EVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQ-KAT 184
+ K +KAA+ A K G KG AA K K AA+KK +K PA+ K T
Sbjct: 362 QAKSDEKAAV--AGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPT 419
Query: 185 GQKAAPA 191
++ PA
Sbjct: 420 TEEKKPA 426
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 39.7 bits (91), Expect = 0.002
Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 130 LQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAA 189
+Q + A+ AP AA A AA A P A + A PA T A
Sbjct: 238 IQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAV 297
Query: 190 PAPKA-QKGQKAPAQKAPAPKASG 212
P P A Q G A A APAP A G
Sbjct: 298 PPPAAAQNGGSAGAAPAPAPAAGG 321
Score = 32.7 bits (73), Expect = 0.24
Identities = 26/72 (36%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 138 ASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKG 197
A P P TAA A AA AA APA PA G P P A
Sbjct: 281 ARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPA----GVSGQPGPGAAAA 336
Query: 198 QKAPAQKAPAPK 209
AP KA +PK
Sbjct: 337 APAPGVKAESPK 348
Score = 32.3 bits (72), Expect = 0.31
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 133 AALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAP 192
AA L+ P+ + G+ AAAA AA PA +K A + A+ G P P
Sbjct: 123 AAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAP--AGPAKPAGPAALAARAGPGPGPGPGP 180
Query: 193 KAQKGQKAPAQKAPAPKASGKKA 215
G PA A +G A
Sbjct: 181 GPGPGPGKPAGPGAAQTLNGSAA 203
Score = 32.3 bits (72), Expect = 0.31
Identities = 20/58 (34%), Positives = 23/58 (39%)
Query: 150 AAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPA 207
AAA A + PA + AP + G A PAP A APA APA
Sbjct: 210 AAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPA 267
Score = 30.8 bits (68), Expect = 0.91
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 138 ASPKKAP---GTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKA 194
A+P AP G G + AAA PA + A S K Q P T + PA A
Sbjct: 311 AAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTA 370
Query: 195 QKGQKAPAQKAPAP 208
P + P
Sbjct: 371 ASMVIGPTMQGALP 384
Score = 29.6 bits (65), Expect = 2.0
Identities = 31/88 (35%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 133 AALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAP 192
AA A+P AP A A A PA TAA P + G APAP
Sbjct: 259 AAPAPAAPAAAPPPPPPAPATLARPPGH-PAGPPTAAPAVPPPAAAQNGGSAGAAPAPAP 317
Query: 193 KA-----QKGQKAPAQKAPAPKASGKKA 215
A GQ P A AP A G KA
Sbjct: 318 AAGGPAGVSGQPGPGAAAAAP-APGVKA 344
Score = 28.1 bits (61), Expect = 5.9
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 143 APGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAP--KAQKGQKA 200
AP T AAAA A V + A+ PA PA+ A G P P +A+ G
Sbjct: 44 APRTPEVRAAAAGALGNHVVSGSPAGAAGAGPA--APAEGAPGAAPEPPPAGRARPGGGG 101
Query: 201 PAQKAP 206
P + P
Sbjct: 102 PQRPGP 107
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 39.7 bits (91), Expect = 0.002
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 95 IEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGT---KGTAA 151
+++ E K + R K + +K EVK +KA KAP K
Sbjct: 761 VKSPEAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEV 820
Query: 152 AAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKAS 211
+ K K+ KKA +K PA T +K K K ++AP ++AP PK
Sbjct: 821 KSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEK-----KDSKKEEAPKKEAPKPKVE 875
Query: 212 GKK 214
KK
Sbjct: 876 EKK 878
Score = 34.3 bits (77), Expect = 0.082
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 12/141 (8%)
Query: 78 QKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLK 137
+KA K + +KK EA +++A + K +K + K E KK +
Sbjct: 845 EKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKES--KVEAKKEE------ 896
Query: 138 ASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAP---AQKVPAQKATGQKAAPAPKA 194
A KK T A A K+ T +KK P K P++ A ++AAP K
Sbjct: 897 AEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKD 956
Query: 195 QKGQKA-PAQKAPAPKASGKK 214
K +KA ++ P +A K+
Sbjct: 957 TKEEKAKKPEEKPKTEAKAKE 977
Score = 31.2 bits (69), Expect = 0.70
Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 2/152 (1%)
Query: 63 KFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRI 122
K P A +A A++ + A AK+ +AK + + K K +
Sbjct: 525 KSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPEKA 584
Query: 123 IKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQK 182
K+ K+ K+ SP+KA A + A A + V + + A K+P + K
Sbjct: 585 -KSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTK 643
Query: 183 ATGQKAAPAPKAQKGQKAPAQKAPAP-KASGK 213
+ A +K + +KA +P KA K
Sbjct: 644 EEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAK 675
Score = 30.0 bits (66), Expect = 1.5
Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 9/153 (5%)
Query: 63 KFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRI 122
K P A +A A++ + A K+ KAK + + K + K
Sbjct: 613 KSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKSP--- 669
Query: 123 IKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQK 182
+K E K +KA SP KA A + AK P K + K A+ K
Sbjct: 670 VKAEAKSPEKA----KSPVKAEAKSPEKAKSPVKEEAKSPEK--AKSPVKEEAKSPEKAK 723
Query: 183 ATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA 215
+ ++ A P+ K K+P S +KA
Sbjct: 724 SPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKA 756
Score = 29.3 bits (64), Expect = 2.6
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 3/149 (2%)
Query: 63 KFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRI 122
K P A +A A++ + A AK+ +AK + + V + K
Sbjct: 559 KSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEA 618
Query: 123 IKNEVKKLQKAALLKASPKKA--PGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPA 180
K+ VK+ K+ SP+KA P + + A + K AK A A+
Sbjct: 619 -KSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSP 677
Query: 181 QKATGQKAAPAPKAQKGQKAPAQKAPAPK 209
+KA A A +K + ++A +P+
Sbjct: 678 EKAKSPVKAEAKSPEKAKSPVKEEAKSPE 706
Score = 27.7 bits (60), Expect = 7.7
Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
Query: 124 KNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAK-----KITAASKKAPAQKV 178
K+ VK+ K+ SP K A + AK P K K K+P K
Sbjct: 709 KSPVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKT 768
Query: 179 PAQKATGQKAAPAPKAQKGQKAPA-------QKAPAPKASGKKA 215
PA++ + +PA K + K+P +KA +P KA
Sbjct: 769 PAKE---EARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKA 809
Score = 27.7 bits (60), Expect = 7.7
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 123 IKNEVKKLQKAALL----KASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKV 178
+K E K +KA SP+KA + + AK PAK+ ++PA K
Sbjct: 726 VKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKE----EARSPADKF 781
Query: 179 PAQ-KATGQKAAPAPKAQKGQKAPAQKAPAPKASGKK 214
P + K+ ++ +P+ K KAP + K+
Sbjct: 782 PEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKE 818
>gi|4885377 histone cluster 1, H1d [Homo sapiens]
Length = 221
Score = 39.7 bits (91), Expect = 0.002
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 117 KMRNRIIKNEVK-KLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPA 175
K+ + E K K +KA K P+K G A AA K KK KK
Sbjct: 107 KLNKKAASGEGKPKAKKAGAAK--PRKPAGAAKKPKKVAGAATPKKSIKKTPKKVKKPAT 164
Query: 176 QKVPAQKATGQKAAPAPKAQKGQKAPAQ-KAPAPKASGKKA 215
+ A K P+ +K K+PA+ KAP PKA+ K+
Sbjct: 165 AAGTKKVAKSAKKVKTPQPKKAAKSPAKAKAPKPKAAKPKS 205
Score = 38.5 bits (88), Expect = 0.004
Identities = 39/122 (31%), Positives = 49/122 (40%), Gaps = 11/122 (9%)
Query: 93 KKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAAA 152
KK + E K K K AK + + KK+ AA K S KK P A
Sbjct: 110 KKAASGEGKPKAK-----KAGAAKPRKPAGAAKKPKKVAGAATPKKSIKKTPKKVKKPAT 164
Query: 153 AAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKASG 212
AA AKK+ K P K A K+ + AP PKA K + + A KA+
Sbjct: 165 AAGTKKVAKSAKKV-----KTPQPK-KAAKSPAKAKAPKPKAAKPKSGKPKVTKAKKAAP 218
Query: 213 KK 214
KK
Sbjct: 219 KK 220
Score = 30.8 bits (68), Expect = 0.91
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 146 TKGTAAAA-------AAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQ 198
TKGT A+ AA+ K AKK AA + PA K A P +K
Sbjct: 97 TKGTGASGSFKLNKKAASGEGKPKAKKAGAAKPRKPAGAAKKPKKVAGAATPKKSIKKTP 156
Query: 199 KAPAQKAPAPKASGKK 214
K K PA A KK
Sbjct: 157 KKV--KKPATAAGTKK 170
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/73 (43%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 139 SPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQ 198
SP K P + AAA AAAAAA A AA+ APA A A AAPA
Sbjct: 487 SPLKRPFS--AAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPA------L 538
Query: 199 KAPAQKAPAPKAS 211
A A APAP A+
Sbjct: 539 AAAAAPAPAPAAA 551
Score = 37.7 bits (86), Expect = 0.007
Identities = 27/76 (35%), Positives = 31/76 (40%)
Query: 133 AALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAP 192
AA A+ AP AAAA A AAA PA AA APA A A+ AP
Sbjct: 507 AAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAP 566
Query: 193 KAQKGQKAPAQKAPAP 208
+ P +A P
Sbjct: 567 SHSQKPSVPLIQASRP 582
Score = 37.4 bits (85), Expect = 0.010
Identities = 32/88 (36%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 125 NEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITA-ASKKAPAQKVPAQKA 183
N Q + LK A AAAAAAAAAA A A A+ APA A A
Sbjct: 478 NSFPPQQAGSPLKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPA 537
Query: 184 TGQKAAPAPKAQKGQKAPAQKAPAPKAS 211
AAPAP A A A A+
Sbjct: 538 LAAAAAPAPAPAAAPAVAAAPAAAASAA 565
Score = 35.0 bits (79), Expect = 0.048
Identities = 29/85 (34%), Positives = 35/85 (41%)
Query: 127 VKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQ 186
+K+ AA A+ A AAAAAA A A A A+ APA A A
Sbjct: 489 LKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAP 548
Query: 187 KAAPAPKAQKGQKAPAQKAPAPKAS 211
AAPA A A A + + K S
Sbjct: 549 AAAPAVAAAPAAAASAAPSHSQKPS 573
Score = 35.0 bits (79), Expect = 0.048
Identities = 28/81 (34%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 133 AALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPA- 191
AA A+ AP AA A AAAAA A A A A V A A AAP+
Sbjct: 509 AAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSH 568
Query: 192 ------PKAQKGQKAPAQKAP 206
P Q + PA + P
Sbjct: 569 SQKPSVPLIQASRPCPAAQPP 589
Score = 31.2 bits (69), Expect = 0.70
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 140 PKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQK 199
P + G+ +AAAA A A AA+ A A PA A AAPA A
Sbjct: 481 PPQQAGSPLKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAA---AAPALAAAAAPA 537
Query: 200 APAQKAPAPKASGKKA 215
A APAP + A
Sbjct: 538 LAAAAAPAPAPAAAPA 553
Score = 31.2 bits (69), Expect = 0.70
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 28/99 (28%)
Query: 138 ASPKKAPGTKGTAAAAAAAAAAKVPAKK------ITAASKKAPAQKVPAQ---------- 181
A+P AP AAA AAAA+ P+ + AS+ PA + P +
Sbjct: 542 AAPAPAPAAAPAVAAAPAAAASAAPSHSQKPSVPLIQASRPCPAAQPPTKFIKIAPAIQL 601
Query: 182 --KATGQKA----APAPKAQ------KGQKAPAQKAPAP 208
+TG KA P AQ K +AP APAP
Sbjct: 602 RTGSTGLKAINVEGPVQGAQALGSSFKPVQAPGSGAPAP 640
Score = 30.4 bits (67), Expect = 1.2
Identities = 23/70 (32%), Positives = 27/70 (38%)
Query: 130 LQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAA 189
L AA + AP AA A A AAA A AA+ AP+ Q +
Sbjct: 522 LAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQKPSVPLIQASR 581
Query: 190 PAPKAQKGQK 199
P P AQ K
Sbjct: 582 PCPAAQPPTK 591
Score = 28.9 bits (63), Expect = 3.5
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 138 ASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKG 197
A+P A A AAA A A PA +AA + VP +A+ A P +
Sbjct: 534 AAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQKPSVPLIQASRPCPAAQPPTKFI 593
Query: 198 QKAPA 202
+ APA
Sbjct: 594 KIAPA 598
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 38.9 bits (89), Expect = 0.003
Identities = 33/101 (32%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 114 KAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKA 173
K KK K V K + KKA T G AAA A PAK +T KK
Sbjct: 52 KGKKAAATSAKKVVVSPTKKVAVATPAKKAAVTPGKKAAATPAKKTVTPAKAVTTPGKKG 111
Query: 174 PAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKK 214
AT KA A +KG PA+ A K + K+
Sbjct: 112 ---------ATPGKALVATPGKKGAAIPAKGAKNGKNAKKE 143
>gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [Homo
sapiens]
Length = 756
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 138 ASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPA-QKVPAQKAT---GQKAAPAPK 193
+SP KAP K T A + PA + +SKK PA KVP+ + T G KA+
Sbjct: 342 SSPVKAPSVKRTPMPDKTATPERPPAPENAPSSKKIPAPDKVPSPEKTLTLGDKASIPGN 401
Query: 194 AQKGQKAPAQKAPAPK 209
+ G+ K P P+
Sbjct: 402 STSGKIPAPDKVPTPE 417
>gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [Homo
sapiens]
Length = 645
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 138 ASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPA-QKVPAQKAT---GQKAAPAPK 193
+SP KAP K T A + PA + +SKK PA KVP+ + T G KA+
Sbjct: 231 SSPVKAPSVKRTPMPDKTATPERPPAPENAPSSKKIPAPDKVPSPEKTLTLGDKASIPGN 290
Query: 194 AQKGQKAPAQKAPAPK 209
+ G+ K P P+
Sbjct: 291 STSGKIPAPDKVPTPE 306
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 38.5 bits (88), Expect = 0.004
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 4/120 (3%)
Query: 99 ERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAA 158
E++ + ++ + KK IK + +K + K P KA TK AA AA
Sbjct: 311 EKEGEKKKAEKKVTSETKKKEKEDIKKKSEKETAIDVEKKEPGKASETKQGTVKIAAQAA 370
Query: 159 AKVPAKKITAASKKAPAQ----KVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKK 214
AK KK + K PA+ K Q+ + PA +K P+ K K K
Sbjct: 371 AKKDEKKEDSKKTKKPAEVEQPKGKKQEKKEKHVEPAKSPKKEHSVPSDKQVKAKTERAK 430
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 38.1 bits (87), Expect = 0.006
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 143 APGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPA 202
APG +AAAAAAAAA A A+S P PA ++ +P A + PA
Sbjct: 108 APGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPA 167
Score = 31.6 bits (70), Expect = 0.53
Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 137 KASPKKAPGTKGTAAAAAAAAAAKV-----PAKKITA-ASKKAPAQKVPAQKATGQKAAP 190
+A P A AAAAAAAAAA PA A A+K+ AQ ++G A P
Sbjct: 111 EAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALP 170
Query: 191 APKAQKGQKAPAQKAPAPKA 210
G A+ P P A
Sbjct: 171 YGYFGSGYYPCARMGPHPNA 190
Score = 28.9 bits (63), Expect = 3.5
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 150 AAAAAAAAAAKVPAKKITA-----------ASKKAPAQKVPAQKATGQKAAPAPKAQKGQ 198
AAAAAAAAAA + + A A AP + P+ A AA A A
Sbjct: 74 AAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAA 133
Query: 199 KAPAQKAPAPKASGKKA 215
+ PA A + A
Sbjct: 134 SSSGGPGPAGPAGAEAA 150
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 37.4 bits (85), Expect = 0.010
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 109 RFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAA-AAAAKVPAKKIT 167
R K+ + + R RI++ E ++L SP AAAAAA AAAA P+ +
Sbjct: 159 RAKLQQCRAERERIMREEKRRL----FTPLSP---------AAAAAAAAAAASAPSAGSS 205
Query: 168 AASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPA 202
++ A PA +A +KA+P+P + + Q PA
Sbjct: 206 SSCSSASLPASPAPRA-ARKASPSPSSARTQPPPA 239
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 37.4 bits (85), Expect = 0.010
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 109 RFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAA-AAAAKVPAKKIT 167
R K+ + + R RI++ E ++L SP AAAAAA AAAA P+ +
Sbjct: 159 RAKLQQCRAERERIMREEKRRL----FTPLSP---------AAAAAAAAAAASAPSAGSS 205
Query: 168 AASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPA 202
++ A PA +A +KA+P+P + + Q PA
Sbjct: 206 SSCSSASLPASPAPRA-ARKASPSPSSARTQPPPA 239
>gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo
sapiens]
Length = 337
Score = 37.4 bits (85), Expect = 0.010
Identities = 33/89 (37%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 128 KKLQ--KAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATG 185
KKLQ KA ++ A +K P G AA A A K K P Q+ PA ATG
Sbjct: 143 KKLQRQKATVMGAKSRKKPQHWGQKAATAGA--------KSPGGGGKKPGQEKPA--ATG 192
Query: 186 QKAAPAPKAQKGQKAPAQKAPAPKASGKK 214
+K A G K P ++ PA A+G K
Sbjct: 193 EKTRAAKSRGGGGKKPRREKPA--AAGAK 219
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 36.6 bits (83), Expect = 0.017
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 124 KNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKA 183
KN KL + L+ P++ PG +G A AA VPA +A ++ P+ +PA +
Sbjct: 14 KNRRAKLARERRLQQQPQRVPGQRGRGARAAPL----VPAAS-ASAPQRGPSGILPAAEP 68
Query: 184 T-----GQKAAPAPKAQKGQKAPAQKAPAP 208
T P +AQKG A P P
Sbjct: 69 TICSLHQAWGGPGCRAQKGIPAALSPGPGP 98
>gi|146219841 PNMA-like 2 [Homo sapiens]
Length = 635
Score = 36.6 bits (83), Expect = 0.017
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 139 SPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQ 198
+P+K G++G+A AA + K K A A A + Q TG KAA KA++G+
Sbjct: 572 TPEKKAGSRGSAQDDAAGSRKK---KGSAGAGAHARAGEAKGQAPTGSKAARGKKARRGR 628
Query: 199 KAP 201
+ P
Sbjct: 629 RLP 631
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 36.2 bits (82), Expect = 0.022
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 144 PGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQ 203
P T+G+A AA+ A P + A+ PA A++ G K A Q+G+ AQ
Sbjct: 3805 PTTRGSAPAASQPAGKPQPGP--STATGPQPAGPPRAEQTNGSKGT-AKAPQQGRAPQAQ 3861
Query: 204 KAPAPKASGKKA 215
AP P +G KA
Sbjct: 3862 PAPGPGPAGVKA 3873
Score = 31.2 bits (69), Expect = 0.70
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 147 KGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPA--QKATGQKAAPAPKAQKGQKAPAQK 204
K AA A A P + AA ++ PA ++A G APAP GQK PA
Sbjct: 2284 KPAAAKAPGAGGPSRPEMPVGAAREEPLPTTTPAAIKEAAG---APAPAPLAGQKPPADA 2340
Query: 205 AP 206
AP
Sbjct: 2341 AP 2342
>gi|4885371 H1 histone family, member 0 [Homo sapiens]
Length = 194
Score = 35.8 bits (81), Expect = 0.028
Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 20/153 (13%)
Query: 70 QKYVRQAW---QKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNE 126
QKY++ + + AD K + R ++ K F++ K+ + + + +
Sbjct: 51 QKYIKSHYKVGENADSQIKLSIKRLVTTGVLKQTKGVGAS-GSFRLAKSDEPKKSVAFKK 109
Query: 127 VKKLQKAALLKASPKKAPGTKGTAAAAAA----AAAAKVPAKKITAASKKAPAQKVPAQK 182
KK K A+PKKA K A+ A A K KK+ A KK A+K
Sbjct: 110 TKKEIKKV---ATPKKASKPKKAASKAPTKKPKATPVKKAKKKLAATPKK-------AKK 159
Query: 183 ATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA 215
KA P KA K +KA K P K+S K+A
Sbjct: 160 PKTVKAKPV-KASKPKKAKPVK-PKAKSSAKRA 190
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 35.0 bits (79), Expect = 0.048
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 92 AKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAA 151
AK +A +KAK +D D + + +N+ K ++ + A KA PK A A
Sbjct: 154 AKAAKAPPKKAKSSDSDSDSSSEDEPPKNQ--KPKITPVTVKAQTKAPPKPARAAPKIAN 211
Query: 152 AAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAP 208
AA++++ ++S + + +KA PK Q KAP + A P
Sbjct: 212 GKAASSSS--------SSSSSSSSDDSEEEKAAATPKKTVPKKQVVAKAPVKAATTP 260
Score = 33.1 bits (74), Expect = 0.18
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 111 KVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAAS 170
KV + K N + + KK ++ + S ++ +G A AA VPAK++
Sbjct: 62 KVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAA-----VPAKRVGLPP 116
Query: 171 KKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA 215
KA A+ ++ ++ ++++ + +K P QK P+A KA
Sbjct: 117 GKAAAKA--SESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKA 159
Score = 31.2 bits (69), Expect = 0.70
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 123 IKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQK 182
++ VK KAA KA PKKA + + +++ K KIT + KA K
Sbjct: 146 VQKGVKPQAKAA--KAPPKKAKSSDSDSDSSSEDEPPKNQKPKITPVTVKAQT------K 197
Query: 183 ATGQKAAPAPKAQKGQKAPAQKAPAPKAS 211
A + A APK G+ A + + + +S
Sbjct: 198 APPKPARAAPKIANGKAASSSSSSSSSSS 226
Score = 28.5 bits (62), Expect = 4.5
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 116 KKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPA 175
+K + + + K KAAL + + G++ +++ + ++++ + K +A KK P
Sbjct: 436 EKTKKMVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKP- 494
Query: 176 QKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKK 214
QK G A P + K KA + + + S ++
Sbjct: 495 -----QKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEE 528
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 35.0 bits (79), Expect = 0.048
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 8/118 (6%)
Query: 92 AKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAA 151
A+K E E + +D + A+ +K VKK Q A A+ +AP KGT +
Sbjct: 679 AEKQEDSESSEEESDSEEAAASPAQ------VKTSVKKTQAKANPAAA--RAPSAKGTIS 730
Query: 152 AAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPK 209
A A AK+ + + K P + + A P K AQ P+
Sbjct: 731 APGKVVTAAAQAKQRSPSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPE 788
Score = 28.9 bits (63), Expect = 3.5
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 133 AALLKASPKKA-----PGTKGTAAAAAAAAAAKVPAKKITAAS---KKAPAQ-----KVP 179
+A K SP+K PG G A A A A + ++ + S ++APAQ K P
Sbjct: 298 SAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAP 357
Query: 180 AQKATGQKAAPAPKAQKGQKAPAQKAPA 207
+A A +P+ P + PA
Sbjct: 358 QVRAASAPAKESPRKGAAPAPPRKTGPA 385
Score = 27.7 bits (60), Expect = 7.7
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 30/104 (28%)
Query: 137 KASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAP---- 192
++S +++ ++ AA A AK K + APA++ P + A APAP
Sbjct: 263 ESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESPRKGA-----APAPPGKT 317
Query: 193 -----KAQKG----------------QKAPAQKAPAPKASGKKA 215
KAQ G ++APAQ P+ KA +A
Sbjct: 318 GPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRA 361
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.126 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,653,774
Number of Sequences: 37866
Number of extensions: 324186
Number of successful extensions: 6414
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 275
Number of HSP's that attempted gapping in prelim test: 4431
Number of HSP's gapped (non-prelim): 1652
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.