Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 7706029
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706029 hypothetical protein LOC51250 isoform a [Homo
sapiens]
(240 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|215599570 hypothetical protein LOC51250 isoform b [Homo sapiens] 479 e-136
gi|215599508 hypothetical protein LOC51250 isoform a [Homo sapiens] 479 e-136
gi|7706029 hypothetical protein LOC51250 isoform a [Homo sapiens] 479 e-136
gi|4504425 high-mobility group box 1 [Homo sapiens] 39 0.005
gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo sap... 37 0.012
gi|122937345 myosin VB [Homo sapiens] 36 0.034
gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens] 36 0.034
gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens] 36 0.034
gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens] 36 0.034
gi|40254947 thioredoxin-related transmembrane protein 4 [Homo sa... 36 0.034
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 34 0.099
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 34 0.099
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens] 34 0.099
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 34 0.099
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom... 34 0.13
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom... 34 0.13
gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens] 34 0.13
gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens] 34 0.13
gi|4503257 death-domain associated protein isoform a [Homo sapiens] 33 0.17
gi|215422388 death-domain associated protein isoform a [Homo sap... 33 0.17
gi|215422366 death-domain associated protein isoform b [Homo sap... 33 0.17
gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens] 33 0.17
gi|50726968 microfibrillar-associated protein 1 [Homo sapiens] 33 0.17
gi|42740903 MTERF domain containing 2 [Homo sapiens] 33 0.22
gi|4758650 kinesin family member 5C [Homo sapiens] 33 0.22
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 33 0.22
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 33 0.22
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 33 0.22
gi|219521893 coiled-coil transcriptional coactivator isoform 2 [... 33 0.22
gi|6912398 general transcription factor IIIC, polypeptide 3, 102... 33 0.22
>gi|215599570 hypothetical protein LOC51250 isoform b [Homo sapiens]
Length = 245
Score = 479 bits (1234), Expect = e-136
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 60
MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY
Sbjct: 6 MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 65
Query: 61 NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE 120
NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE
Sbjct: 66 NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE 125
Query: 121 ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 180
ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR
Sbjct: 126 ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 185
Query: 181 TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 240
TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK
Sbjct: 186 TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 245
>gi|215599508 hypothetical protein LOC51250 isoform a [Homo sapiens]
Length = 240
Score = 479 bits (1234), Expect = e-136
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 60
MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY
Sbjct: 1 MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 60
Query: 61 NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE 120
NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE
Sbjct: 61 NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE 120
Query: 121 ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 180
ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR
Sbjct: 121 ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 180
Query: 181 TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 240
TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK
Sbjct: 181 TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 240
>gi|7706029 hypothetical protein LOC51250 isoform a [Homo sapiens]
Length = 240
Score = 479 bits (1234), Expect = e-136
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 60
MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY
Sbjct: 1 MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 60
Query: 61 NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE 120
NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE
Sbjct: 61 NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE 120
Query: 121 ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 180
ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR
Sbjct: 121 ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 180
Query: 181 TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 240
TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK
Sbjct: 181 TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 240
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 38.5 bits (88), Expect = 0.005
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 85 KSNIRSTKSTKKSLQKVDEED-SDEESHHDEMSEQEEELEDD 125
K +++ KS KK ++ DEED DEE DE E EEE +DD
Sbjct: 173 KGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDD 214
Score = 27.7 bits (60), Expect = 9.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 93 STKKSLQKVDEEDSDEESHHDEMSEQEEELEDD 125
+ KK + K ++ +E DE E++EE E+D
Sbjct: 170 AAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEED 202
>gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo
sapiens]
Length = 2211
Score = 37.4 bits (85), Expect = 0.012
Identities = 15/63 (23%), Positives = 36/63 (57%)
Query: 83 RLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSF 142
RLK+ ++ K +K + DE + +E S +E S +EEE+E++ + +++ ++
Sbjct: 931 RLKAKLQRKKKKRKGSDEEDEGEEEESSSSEESSSEEEEMEEEEEEEEFGPGMQEVIEQH 990
Query: 143 RYD 145
+++
Sbjct: 991 KFE 993
>gi|122937345 myosin VB [Homo sapiens]
Length = 1848
Score = 35.8 bits (81), Expect = 0.034
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 12/135 (8%)
Query: 99 QKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYDV-VLKTGLDIGRN 157
Q DE + + E EEE +VK Y LE+ + R ++ ++K RN
Sbjct: 1041 QSKDEFAQNSVKENLMKKELEEERSRYQNLVKEYSQLEQRYDNLRDEMTIIKQTPGHRRN 1100
Query: 158 KVEDAFYKGELRLNEEKLWKKSRTVKVGDTLDLL-----IGEDKEAGTETVMRILLKKVF 212
+ L + + T ++GDT D L IG +K A TV L K+V
Sbjct: 1101 P------SNQSSLESDSNYPSISTSEIGDTEDALQQVEEIGLEKAAMDMTVFLKLQKRVR 1154
Query: 213 EEKTESEKYRVVLRR 227
E + E +K +V L +
Sbjct: 1155 ELEQERKKLQVQLEK 1169
>gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 35.8 bits (81), Expect = 0.034
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 89 RSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEE------------LEDDPTVVKNYKDLE 136
RS ++K + DEE+ +EE +DE E+E++ + D+ V Y+D E
Sbjct: 31 RSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDEADVDDEYED-E 89
Query: 137 KAVQSFRYDVVLKTGLDIGR--NKVEDAFYKGELRLNEEKLWKKSRTVKVGD 186
+ D++ K ++ N V D G RL + LW+ R ++G+
Sbjct: 90 DQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRL--QNLWRDQREEELGE 139
>gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 35.8 bits (81), Expect = 0.034
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 89 RSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEE------------LEDDPTVVKNYKDLE 136
RS ++K + DEE+ +EE +DE E+E++ + D+ V Y+D E
Sbjct: 31 RSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDEADVDDEYED-E 89
Query: 137 KAVQSFRYDVVLKTGLDIGR--NKVEDAFYKGELRLNEEKLWKKSRTVKVGD 186
+ D++ K ++ N V D G RL + LW+ R ++G+
Sbjct: 90 DQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRL--QNLWRDQREEELGE 139
>gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 35.8 bits (81), Expect = 0.034
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 89 RSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEE------------LEDDPTVVKNYKDLE 136
RS ++K + DEE+ +EE +DE E+E++ + D+ V Y+D E
Sbjct: 31 RSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDEADVDDEYED-E 89
Query: 137 KAVQSFRYDVVLKTGLDIGR--NKVEDAFYKGELRLNEEKLWKKSRTVKVGD 186
+ D++ K ++ N V D G RL + LW+ R ++G+
Sbjct: 90 DQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRL--QNLWRDQREEELGE 139
>gi|40254947 thioredoxin-related transmembrane protein 4 [Homo
sapiens]
Length = 349
Score = 35.8 bits (81), Expect = 0.034
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 23/151 (15%)
Query: 39 WNRYLYFSSTKLRAPNYKTLFYNIFSLRLPGLLLS------PECIFP-----FSVRLKSN 87
W+ + YF+ T L P + + + + + + GL + EC + S R + N
Sbjct: 171 WHLHNYFTVT-LGIPAWCSYVFFVIATLVFGLFMGLVLVVISECFYVPLPRHLSERSEQN 229
Query: 88 IRSTKSTK-KSLQKVDEE--DSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRY 144
RS ++ + + LQ +EE DS+EE + D + + EEE ED D ++A +
Sbjct: 230 RRSEEAHRAEQLQDAEEEKDDSNEEENKDSLVDDEEEKED-------LGDEDEAEEEEEE 282
Query: 145 DVVLKTGLDIGRNKVEDAFYKGELRLNEEKL 175
D L G+D R++ D GE + E++
Sbjct: 283 D-NLAAGVDEERSEANDQGPPGEDGVTREEV 312
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 34.3 bits (77), Expect = 0.099
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 88 IRSTKSTKKSLQKVDEED-SDEESHHDEMSEQEEELEDD 125
+++ KS KK ++ +EED DEE DE E EE+ ED+
Sbjct: 312 VKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDE 350
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 34.3 bits (77), Expect = 0.099
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 88 IRSTKSTKKSLQKVDEED-SDEESHHDEMSEQEEELEDD 125
+++ KS KK ++ +EED DEE DE E EE+ ED+
Sbjct: 312 VKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDE 350
>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
Length = 1083
Score = 34.3 bits (77), Expect = 0.099
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 19/111 (17%)
Query: 89 RSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEE------------LEDDPTVVKNYKDLE 136
RS ++K + DEE+ +EE +DE E+E++ + D+ V Y+D E
Sbjct: 31 RSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDEADVDDEYED-E 89
Query: 137 KAVQSFRYDVVLK-TGLDIGRNKVEDAFYKGELRLNEEKLWKKSRTVKVGD 186
+ D++ K + +D N V D G RL + LW+ R ++G+
Sbjct: 90 DQWEDGAEDILEKASNID---NVVLDEDRSGARRL--QNLWRDQREEELGE 135
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 34.3 bits (77), Expect = 0.099
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 85 KSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELE 123
K +++ KS KK ++ DEED ++E DE E++++ E
Sbjct: 173 KGVVKAEKSKKKKEEEEDEEDEEDEEEEDEEDEEDDDDE 211
Score = 28.1 bits (61), Expect = 7.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 92 KSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDD 125
++ KK + K ++ +E DE E++EE ED+
Sbjct: 169 EAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEDE 202
>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
sapiens]
Length = 1108
Score = 33.9 bits (76), Expect = 0.13
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 103 EEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDA 162
EED D E +E ++ EEL+++ K D E+ + ++ +VE+A
Sbjct: 1015 EEDEDSEKEEEEEDKEMEELQEEKECEKPQGDEEEEEEE----------EEVEEEEVEEA 1064
Query: 163 FYKGELRLNEEKLWKKSRTVKVGDTLDLLIGEDKEAGTE 201
+GE E L K R +L +GE E +E
Sbjct: 1065 ENEGE-EAKTEGLMKDDRAESQASSLGQKVGESSEQVSE 1102
>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
sapiens]
Length = 1124
Score = 33.9 bits (76), Expect = 0.13
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 103 EEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDA 162
EED D E +E ++ EEL+++ K D E+ + ++ +VE+A
Sbjct: 1031 EEDEDSEKEEEEEDKEMEELQEEKECEKPQGDEEEEEEE----------EEVEEEEVEEA 1080
Query: 163 FYKGELRLNEEKLWKKSRTVKVGDTLDLLIGEDKEAGTE 201
+GE E L K R +L +GE E +E
Sbjct: 1081 ENEGE-EAKTEGLMKDDRAESQASSLGQKVGESSEQVSE 1118
>gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]
Length = 1226
Score = 33.9 bits (76), Expect = 0.13
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 85 KSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNY 132
K+ ++ S+ ++ ++ +EED DE+ D SE+EEE+E P +N+
Sbjct: 266 KTELKEDSSSSEAEEEEEEED-DEKEKEDNSSEEEEEIEPFPEERENF 312
>gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]
Length = 1312
Score = 33.9 bits (76), Expect = 0.13
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 85 KSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNY 132
K+ ++ S+ ++ ++ +EED DE+ D SE+EEE+E P +N+
Sbjct: 266 KTELKEDSSSSEAEEEEEEED-DEKEKEDNSSEEEEEIEPFPEERENF 312
Score = 32.7 bits (73), Expect = 0.29
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 81 SVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDD 125
S+ +K K+ +E++ DEE+ +E E+EEE EDD
Sbjct: 513 SLNIKVEAEEEKAKSGDETNKEEDEDDEEAEEEEEEEEEEEDEDD 557
Score = 31.6 bits (70), Expect = 0.64
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 81 SVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDD 125
++++++ KS ++ ++ DE+D + E +E E+E+E +DD
Sbjct: 515 NIKVEAEEEKAKSGDETNKEEDEDDEEAEEEEEEEEEEEDEDDDD 559
>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
Length = 740
Score = 33.5 bits (75), Expect = 0.17
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 97 SLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGR 156
S + + +D D+E +E E+EEE E++ T + +DLE+ + D +
Sbjct: 429 SASRAETDDEDDEESDEEEEEEEEEEEEEATDSEEEEDLEQMQEGQEDDEEEDEEEEAAA 488
Query: 157 NKVEDAFYKGELRLNEEK 174
K D L+++ EK
Sbjct: 489 GKDGDKSPMSSLQISNEK 506
>gi|215422388 death-domain associated protein isoform a [Homo
sapiens]
Length = 740
Score = 33.5 bits (75), Expect = 0.17
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 97 SLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGR 156
S + + +D D+E +E E+EEE E++ T + +DLE+ + D +
Sbjct: 429 SASRAETDDEDDEESDEEEEEEEEEEEEEATDSEEEEDLEQMQEGQEDDEEEDEEEEAAA 488
Query: 157 NKVEDAFYKGELRLNEEK 174
K D L+++ EK
Sbjct: 489 GKDGDKSPMSSLQISNEK 506
>gi|215422366 death-domain associated protein isoform b [Homo
sapiens]
Length = 752
Score = 33.5 bits (75), Expect = 0.17
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 97 SLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGR 156
S + + +D D+E +E E+EEE E++ T + +DLE+ + D +
Sbjct: 441 SASRAETDDEDDEESDEEEEEEEEEEEEEATDSEEEEDLEQMQEGQEDDEEEDEEEEAAA 500
Query: 157 NKVEDAFYKGELRLNEEK 174
K D L+++ EK
Sbjct: 501 GKDGDKSPMSSLQISNEK 518
>gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens]
Length = 977
Score = 33.5 bits (75), Expect = 0.17
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 16/144 (11%)
Query: 53 PNYKTLFYNIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDE--EDSDEES 110
P+ K + +L PG L P + P+S + S ST+ SL K D E+++ +
Sbjct: 327 PSKKLAASVLDALDPPGPTLDPLDLLPYSETRLDALDSFGSTRGSLDKPDSFMEETNSQD 386
Query: 111 HHDEMSEQEEELEDDPTVVKN---YKDLEKAVQSFRYDVVL---KTGLDIG--------R 156
H Q+ +P + K+ A F+ L KTG G
Sbjct: 387 HRPPSGAQKPAPSPEPCMPNTALLIKNPLAATHEFKQACQLCYPKTGPRAGDYTYREGLE 446
Query: 157 NKVEDAFYKGELRLNEEKLWKKSR 180
+K + G LR +E++ WK+ R
Sbjct: 447 HKCKRDILLGRLRSSEDQTWKRIR 470
>gi|50726968 microfibrillar-associated protein 1 [Homo sapiens]
Length = 439
Score = 33.5 bits (75), Expect = 0.17
Identities = 34/165 (20%), Positives = 77/165 (46%), Gaps = 11/165 (6%)
Query: 84 LKSNIRSTKSTKKSLQKVDEE-----DSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKA 138
++ + K+ + + +V++E +S+ ES ++E ++ E+E+E V K
Sbjct: 152 MRQRAQERKNEEMEVMEVEDEGRSGEESESESEYEEYTDSEDEMEPRLKPVFIRKKDRVT 211
Query: 139 VQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEE----KLWKKSRTVKVGDTLDLLIGE 194
VQ + + + L+ ++ + K L++ EE +L + R++ D L+
Sbjct: 212 VQEREAEALKQKELEQEAKRMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDEN 271
Query: 195 DKEAGTETVMRIL--LKKVFEEKTESEKYRVVLRRWKSLKLPKKR 237
D+E +R L +K+ E++ EK + + R ++L ++R
Sbjct: 272 DEEEYEAWKVRELKRIKRDREDREALEKEKAEIERMRNLTEEERR 316
>gi|42740903 MTERF domain containing 2 [Homo sapiens]
Length = 381
Score = 33.1 bits (74), Expect = 0.22
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 90 STKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKD 134
ST K++ DE+D DEE + ++ ++++++ EDD N +D
Sbjct: 330 STSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDED 374
>gi|4758650 kinesin family member 5C [Homo sapiens]
Length = 957
Score = 33.1 bits (74), Expect = 0.22
Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 22/132 (16%)
Query: 86 SNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYD 145
+ ++ + KK+L++ + +S E+H ++S +E+E+ ++ +DL + +Q +
Sbjct: 691 TRLQDAEEMKKALEQ--QMESHREAHQKQLSRLRDEIEEKQKIIDEIRDLNQKLQLEQE- 747
Query: 146 VVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSRTVKVGDTLDLLIGEDKEAGTETVMR 205
K D + K+ED +E+ K + + + D + ED + ETV R
Sbjct: 748 ---KLSSDYNKLKIED----------QEREMKLEKLLLLNDKRE-QAREDLKGLEETVSR 793
Query: 206 IL-----LKKVF 212
L L+K+F
Sbjct: 794 ELQTLHNLRKLF 805
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 33.1 bits (74), Expect = 0.22
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 34/164 (20%)
Query: 83 RLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQ-----------EEELE------DD 125
RLK ++ + +K+ +K+D E +D + E+ Q EEEL+ DD
Sbjct: 1042 RLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKEEELQGALARGDD 1101
Query: 126 PTVVKN-----YKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 180
T+ KN ++L+ + + D + RNK E K + L+EE ++
Sbjct: 1102 ETLHKNNALKVVRELQAQIAELQEDFESEKA---SRNKAE----KQKRDLSEE---LEAL 1151
Query: 181 TVKVGDTLDLLIGEDKEAGTETVMRIL-LKKVFEEKTESEKYRV 223
++ DTLD + +E T+ + LKK EE+T++ + ++
Sbjct: 1152 KTELEDTLDTTAAQ-QELRTKREQEVAELKKALEEETKNHEAQI 1194
Score = 30.0 bits (66), Expect = 1.9
Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 34/179 (18%)
Query: 82 VRLKSNIRSTKSTKKSLQKVDEEDSDEESH--------HDEMSEQEEELEDDPTVV---- 129
+ L S IR + K SLQ+ EE+ + + ++++ +++++DD +
Sbjct: 1332 LNLSSRIRQLEEEKNSLQEQQEEEEEARKNLEKQVLALQSQLADTKKKVDDDLGTIESLE 1391
Query: 130 ----KNYKDLEKAVQSFRYDVVLKTGLDIGRNKVE--------DAFYKGELRLNEEKLWK 177
K KD E Q + L+ +N+++ D ++ ++ N EK K
Sbjct: 1392 EAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQK 1451
Query: 178 ---------KSRTVKVGDTLDLLIGEDKEAGTETV-MRILLKKVFEEKTESEKYRVVLR 226
KS + + + D E +E T+ + + L++ E K E E+ LR
Sbjct: 1452 KFDQLLAEEKSISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLR 1510
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 33.1 bits (74), Expect = 0.22
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 84 LKSNIRSTKSTKKSLQ-KVDEEDSDE-----ESHHDEMSEQEEELEDDPTVVKNYKDLEK 137
L+ N RS K KK + KV E+ S E E +E E+EEE E++ ++ D K
Sbjct: 1374 LEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSK 1433
Query: 138 AVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSRTVKVGDTLDLLIGEDKE 197
+ R + D R + ++A + E R ++ R K+ + +++ E
Sbjct: 1434 SPGKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAERERERE-KLREVIEI------E 1486
Query: 198 AGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKL 233
+ T I K V +E E+++ V + R +KL
Sbjct: 1487 DASPTKCPITTKLVLDEDEETKEPLVQVHRNMVIKL 1522
Score = 29.3 bits (64), Expect = 3.2
Identities = 24/115 (20%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 63 FSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEEL 122
+S++ G S + + +R + N+ S ++TK+ D++E S ++ +Q
Sbjct: 1077 YSMKEDGCNSSDKRLKRIELRERRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKKQRTSS 1136
Query: 123 EDDPTVVKNYK--DLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKL 175
+ +VK K L + + + D+ + DI + +D GE +E+K+
Sbjct: 1137 KKKAVIVKEKKRNSLRTSTKRKQADITSSSSSDI---EDDDQNSIGEGSSDEQKI 1188
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 33.1 bits (74), Expect = 0.22
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 84 LKSNIRSTKSTKKSLQ-KVDEEDSDE-----ESHHDEMSEQEEELEDDPTVVKNYKDLEK 137
L+ N RS K KK + KV E+ S E E +E E+EEE E++ ++ D K
Sbjct: 1412 LEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSK 1471
Query: 138 AVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSRTVKVGDTLDLLIGEDKE 197
+ R + D R + ++A + E R ++ R K+ + +++ E
Sbjct: 1472 SPGKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAERERERE-KLREVIEI------E 1524
Query: 198 AGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKL 233
+ T I K V +E E+++ V + R +KL
Sbjct: 1525 DASPTKCPITTKLVLDEDEETKEPLVQVHRNMVIKL 1560
Score = 29.3 bits (64), Expect = 3.2
Identities = 24/115 (20%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 63 FSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEEL 122
+S++ G S + + +R + N+ S ++TK+ D++E S ++ +Q
Sbjct: 1115 YSMKEDGCNSSDKRLKRIELRERRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKKQRTSS 1174
Query: 123 EDDPTVVKNYK--DLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKL 175
+ +VK K L + + + D+ + DI + +D GE +E+K+
Sbjct: 1175 KKKAVIVKEKKRNSLRTSTKRKQADITSSSSSDI---EDDDQNSIGEGSSDEQKI 1226
>gi|219521893 coiled-coil transcriptional coactivator isoform 2
[Homo sapiens]
Length = 606
Score = 33.1 bits (74), Expect = 0.22
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 19/171 (11%)
Query: 83 RLKSNIRS-TKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDL------ 135
RL+ +++ T+ +K L ++ E +D+E E+ +E+L + + +
Sbjct: 220 RLRDTVKALTREQEKLLGQLKEVQADKEQSEAELEPLKEQLRGAQELAASSQQKATLLGE 279
Query: 136 EKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGE-----LRLNEEKL-WKKSRTVKVGDTLD 189
E A + D +T ++ R+++E A G L L EEK W K R G
Sbjct: 280 ELASAAAARD---RTIAELHRSRLEVAEVNGRLAELGLHLKEEKCQWSKER---AGLLQS 333
Query: 190 LLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 240
+ +DK + L K V EE+T+++ ++ L R K L + SK
Sbjct: 334 VEAEKDKILKLSAEILRLEKAVQEERTQNQVFKTELAREKDSSLVQLSESK 384
>gi|6912398 general transcription factor IIIC, polypeptide 3, 102kDa
[Homo sapiens]
Length = 886
Score = 33.1 bits (74), Expect = 0.22
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 19/83 (22%)
Query: 64 SLRLPGLLLSPECIFPFSVRLKSNIRSTKS-------------TKKSLQKV------DEE 104
SL+ G L + E V S I STKS +KS+ KV + E
Sbjct: 35 SLQEKGKLSAEENPDDSEVPSSSGINSTKSQDKDVNEGETSDGVRKSVHKVFASMLGENE 94
Query: 105 DSDEESHHDEMSEQEEELEDDPT 127
D +EE +E E+EEE + PT
Sbjct: 95 DDEEEEEEEEEEEEEEETPEQPT 117
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,917,653
Number of Sequences: 37866
Number of extensions: 396129
Number of successful extensions: 6325
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 4342
Number of HSP's gapped (non-prelim): 1405
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.