Guide to the Human Genome
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Search of human proteins with 14043070

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform
b [Homo sapiens]
         (372 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b...   784   0.0  
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   562   e-160
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   562   e-160
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ...   561   e-160
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap...   550   e-157
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc...   503   e-143
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl...   473   e-133
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl...   473   e-133
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor...   471   e-133
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform...   471   e-133
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi...   301   8e-82
gi|239747524 PREDICTED: similar to serum response factor-related...   254   1e-67
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...   201   9e-52
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ...   199   3e-51
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ...   198   7e-51
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo...   196   3e-50
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ...   177   1e-44
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ...   175   5e-44
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ...   172   4e-43
gi|20373175 musashi 2 isoform a [Homo sapiens]                        166   3e-41
gi|4505255 musashi 1 [Homo sapiens]                                   160   2e-39
gi|25121993 musashi 2 isoform b [Homo sapiens]                        155   7e-38
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]          147   2e-35
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]         147   2e-35
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]         145   6e-35
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]         145   6e-35
gi|55956899 keratin 9 [Homo sapiens]                                  129   3e-30
gi|6678271 TAR DNA binding protein [Homo sapiens]                     124   1e-28
gi|109255251 loricrin [Homo sapiens]                                  115   5e-26
gi|55956788 nucleolin [Homo sapiens]                                  105   7e-23

>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
           [Homo sapiens]
          Length = 372

 Score =  784 bits (2025), Expect = 0.0
 Identities = 372/372 (100%), Positives = 372/372 (100%)

Query: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
           TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
           LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240

Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
           GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG
Sbjct: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300

Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
           GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS
Sbjct: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360

Query: 361 SSSSSYGSGRRF 372
           SSSSSYGSGRRF
Sbjct: 361 SSSSSYGSGRRF 372


>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  562 bits (1449), Expect = e-160
 Identities = 291/372 (78%), Positives = 294/372 (79%), Gaps = 52/372 (13%)

Query: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
           TYATVEEVDAAMN  PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180

Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
           L KQEMASASSSQRGR GSGNFGGGR            G  F G   FG  RGG      
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGR------------GDGFGGNDNFG--RGGN----- 221

Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
                 F   GG+GG              GG GYG  G GY G G+              
Sbjct: 222 ------FSGRGGFGGS------------CGGGGYGGSGDGYNGFGN-------------- 249

Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
             GSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKP+NQGGYG S
Sbjct: 250 -DGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVS 308

Query: 361 SSSSSYGSGRRF 372
           SSSSSYGSGRRF
Sbjct: 309 SSSSSYGSGRRF 320


>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  562 bits (1449), Expect = e-160
 Identities = 291/372 (78%), Positives = 294/372 (79%), Gaps = 52/372 (13%)

Query: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
           TYATVEEVDAAMN  PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180

Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
           L KQEMASASSSQRGR GSGNFGGGR            G  F G   FG  RGG      
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGR------------GDGFGGNDNFG--RGGN----- 221

Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
                 F   GG+GG              GG GYG  G GY G G+              
Sbjct: 222 ------FSGRGGFGGS------------CGGGGYGGSGDGYNGFGN-------------- 249

Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
             GSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKP+NQGGYG S
Sbjct: 250 -DGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVS 308

Query: 361 SSSSSYGSGRRF 372
           SSSSSYGSGRRF
Sbjct: 309 SSSSSYGSGRRF 320


>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
           [Homo sapiens]
          Length = 320

 Score =  561 bits (1447), Expect = e-160
 Identities = 293/372 (78%), Positives = 298/372 (80%), Gaps = 52/372 (13%)

Query: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
           TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
           LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240

Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
           GDGYNGFGNDG   GGG  Y+     +G+    Y NQ S +G            GG FGG
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYN----DFGN----YNNQSSNFGPM---------KGGNFGG 283

Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
            S   +GGGG Y  F    NQ        GG                         YGGS
Sbjct: 284 RSSGPYGGGGQY--FAKPRNQ--------GG-------------------------YGGS 308

Query: 361 SSSSSYGSGRRF 372
           SSSSSYGSGRRF
Sbjct: 309 SSSSSYGSGRRF 320


>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
           sapiens]
          Length = 378

 Score =  550 bits (1418), Expect = e-157
 Identities = 283/376 (75%), Positives = 302/376 (80%), Gaps = 27/376 (7%)

Query: 3   KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           +   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24  EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83

Query: 63  ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
           + VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84  SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143

Query: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182
           DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203

Query: 183 KQEMASASSSQRGR-SGSGNFGGGRGGGF-GGNDNFGRGGNFSGRGGFGGSRGG--GGYG 238
           KQEM SA  SQRGR  GSGNF  GRGG F GG  NFGRGGNF GRGG+GG  GG  G YG
Sbjct: 204 KQEMQSA-GSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261

Query: 239 GSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGF 298
           G   GYNGFG DGG  GGGPGYS    GYG GG GYGNQG GYGG G YD YN   GG F
Sbjct: 262 GGDGGYNGFGGDGGNYGGGPGYSSRG-GYGGGGPGYGNQGGGYGGGGGYDGYNE--GGNF 318

Query: 299 GGGSGSNFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSSG-PYGGGGQYFAKPRNQGG 356
           GGG   N+GGGG+YNDFGNY+  Q SN+GPMKGG+FGGRSSG PYG            GG
Sbjct: 319 GGG---NYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYG------------GG 363

Query: 357 YGGSSSSSSYGSGRRF 372
           YG    S  YGS RRF
Sbjct: 364 YGSGGGSGGYGS-RRF 378



 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 4/111 (3%)

Query: 75  RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
           RP    GR    +R    E+   P     ++K+F+GG+  +T +  LR++FE++G +   
Sbjct: 9   RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64

Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
            +M D  + + RGF FVT+   + VD  +  + H V+G   E ++A+S+++
Sbjct: 65  VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115


>gi|169203146 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  503 bits (1296), Expect = e-143
 Identities = 264/372 (70%), Positives = 279/372 (75%), Gaps = 57/372 (15%)

Query: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKSESPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60

Query: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
            Y TVEEVDAAMNARPHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH 
Sbjct: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
           LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180

Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
           LSKQ+MASA SSQR RSGSGNFGGGR            GG FSG   F       G+GG+
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGR------------GGGFSGNDNF-------GHGGN 221

Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
                 F   GG GG                  +G    GY G G+              
Sbjct: 222 ------FSGCGGLGGS-----------------HGGSADGYNGFGN-------------- 244

Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
             G NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S  YGGGGQYFAKP+NQGGYGGS
Sbjct: 245 -DGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGS 303

Query: 361 SSSSSYGSGRRF 372
           SSSSSYGSGRRF
Sbjct: 304 SSSSSYGSGRRF 315


>gi|89035135 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  473 bits (1217), Expect = e-133
 Identities = 257/372 (69%), Positives = 272/372 (73%), Gaps = 57/372 (15%)

Query: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKSESPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60

Query: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
            Y TVEEVDAAMNARPHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH 
Sbjct: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
           LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180

Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
           LSKQ+MASA SSQR RSGSGNFGGGRGGGF GNDNFG GGNFSG GGFGGS     +GGS
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235

Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
            DGYNGFGNDG   GGG  Y+     +G+      NQ S +G          GG   FGG
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYN----DFGN----CNNQSSNFGPM-------KGG--NFGG 278

Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
                +GGGG Y  F    NQ                 G YG                GS
Sbjct: 279 KRSCLYGGGGQY--FAKPQNQ-----------------GGYG----------------GS 303

Query: 361 SSSSSYGSGRRF 372
           SSSSSYGSGRRF
Sbjct: 304 SSSSSYGSGRRF 315


>gi|89034333 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  473 bits (1217), Expect = e-133
 Identities = 257/372 (69%), Positives = 272/372 (73%), Gaps = 57/372 (15%)

Query: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
           MSKSESPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60

Query: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
            Y TVEEVDAAMNARPHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH 
Sbjct: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120

Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
           LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180

Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
           LSKQ+MASA SSQR RSGSGNFGGGRGGGF GNDNFG GGNFSG GGFGGS     +GGS
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235

Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
            DGYNGFGNDG   GGG  Y+     +G+      NQ S +G          GG   FGG
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYN----DFGN----CNNQSSNFGPM-------KGG--NFGG 278

Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
                +GGGG Y  F    NQ                 G YG                GS
Sbjct: 279 KRSCLYGGGGQY--FAKPQNQ-----------------GGYG----------------GS 303

Query: 361 SSSSSYGSGRRF 372
           SSSSSYGSGRRF
Sbjct: 304 SSSSSYGSGRRF 315


>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
           B1 [Homo sapiens]
          Length = 353

 Score =  471 bits (1211), Expect = e-133
 Identities = 237/358 (66%), Positives = 266/358 (74%), Gaps = 25/358 (6%)

Query: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15  REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74

Query: 68  VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
           VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134

Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM 
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194

Query: 188 SASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGF 247
              SS+ GR G+  FG  RGG  GGN   G G NF      GGS G G   G GDGYNG+
Sbjct: 195 EVQSSRSGRGGNFGFGDSRGG--GGNFGPGPGSNFR-----GGSDGYGSGRGFGDGYNGY 247

Query: 248 GN--DGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSN 305
           G    GG  GG PGY GG  GYG GG GYGNQG GYGG      Y+N GGG +       
Sbjct: 248 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG-----GYDNYGGGNY------- 295

Query: 306 FGGGGSYNDFGNYNNQSSNFGPMKGGNFGG--RSSGPYGGGGQYFAKPRNQGGYGGSS 361
             G G+YNDFGNYN Q SN+GPMK GNFGG     GPYGGG          GGYGG S
Sbjct: 296 --GSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 351



 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 30/94 (31%), Positives = 56/94 (59%)

Query: 3   KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           +S  P     ++KLF+GG+  +T +  LR +FE++G +    ++ D  + + RGFGFVT+
Sbjct: 101 ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160

Query: 63  ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
              + VD  +  + H ++G   E ++A+SR++ Q
Sbjct: 161 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194


>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
           [Homo sapiens]
          Length = 341

 Score =  471 bits (1211), Expect = e-133
 Identities = 237/358 (66%), Positives = 266/358 (74%), Gaps = 25/358 (6%)

Query: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62

Query: 68  VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
           VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122

Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM 
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182

Query: 188 SASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGF 247
              SS+ GR G+  FG  RGG  GGN   G G NF      GGS G G   G GDGYNG+
Sbjct: 183 EVQSSRSGRGGNFGFGDSRGG--GGNFGPGPGSNFR-----GGSDGYGSGRGFGDGYNGY 235

Query: 248 GN--DGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSN 305
           G    GG  GG PGY GG  GYG GG GYGNQG GYGG      Y+N GGG +       
Sbjct: 236 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG-----GYDNYGGGNY------- 283

Query: 306 FGGGGSYNDFGNYNNQSSNFGPMKGGNFGG--RSSGPYGGGGQYFAKPRNQGGYGGSS 361
             G G+YNDFGNYN Q SN+GPMK GNFGG     GPYGGG          GGYGG S
Sbjct: 284 --GSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 339



 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 30/94 (31%), Positives = 56/94 (59%)

Query: 3   KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           +S  P     ++KLF+GG+  +T +  LR +FE++G +    ++ D  + + RGFGFVT+
Sbjct: 89  ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148

Query: 63  ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
              + VD  +  + H ++G   E ++A+SR++ Q
Sbjct: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182


>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
           sapiens]
          Length = 305

 Score =  301 bits (770), Expect = 8e-82
 Identities = 177/357 (49%), Positives = 211/357 (59%), Gaps = 58/357 (16%)

Query: 9   EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
           E  QL KLFIGGL+ +T++  LR HFE +GTLTDCVV+ +P TKRSR FGFVTY+ VEE 
Sbjct: 2   ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61

Query: 69  DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
           DAAM A PH VDG  VE KRAVSREDS RPGAH  VKK+FVGG+K D  E  L ++F Q+
Sbjct: 62  DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121

Query: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
           G +E  EI+ D+ SGKKRGF FV F +HD+ DK  + K+H + GH  EV+KA+ K+++ S
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181

Query: 189 ASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFG 248
                 G  GS +  GGRGG        GRGG   GR   G S+GGGG      GYN +G
Sbjct: 182 GG----GGGGSRSSRGGRGGR-------GRGG---GRDQNGLSKGGGG------GYNSYG 221

Query: 249 NDGGYGGGG-PGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGG---GGFGGGSGS 304
             GG GGGG   Y GG  G   GG  YGN   G+GG GSY  + +  G    G GGG G 
Sbjct: 222 GYGGGGGGGYNAYGGGGGGSSYGGSDYGN---GFGGFGSYSQHQSSYGPMKSGGGGGGGG 278

Query: 305 NFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSS 361
           +  GG             SN GP +GG         YGGG          GGYGGSS
Sbjct: 279 SSWGG------------RSNSGPYRGG---------YGGG----------GGYGGSS 304



 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 77/273 (28%), Positives = 111/273 (40%), Gaps = 68/273 (24%)

Query: 4   SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
           S  P    +++KLF+GGL  +  +  L  HF Q+GT+    ++ D  + + RGFGFV + 
Sbjct: 88  SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147

Query: 64  TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
             +  D A   + H + G  VE K+AV +ED    G          GG +        R 
Sbjct: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGG--------GGSRSSRGGRGGR- 198

Query: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
                           RG G+          D + + K     Y++  G+          
Sbjct: 199 ---------------GRGGGR----------DQNGLSKGGGGGYNSYGGY---------- 223

Query: 184 QEMASASSSQRGRSGSGNF----GGGRGGGFGGND---NFGRGGNFS-GRGGFGGSRGGG 235
                      G  G G +    GGG G  +GG+D    FG  G++S  +  +G  + GG
Sbjct: 224 -----------GGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGG 272

Query: 236 GYGGSGDGYNGFGND----GGYGGGGPGYSGGS 264
           G GG G  + G  N     GGYGGGG GY G S
Sbjct: 273 GGGGGGSSWGGRSNSGPYRGGYGGGG-GYGGSS 304



 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 75/275 (27%), Positives = 116/275 (42%), Gaps = 29/275 (10%)

Query: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
           K+F+GG+   T E  LR +FE +G +    ++ +  + + R F FVT+ + +  D  +  
Sbjct: 8   KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67

Query: 166 KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGND---NFGRGGNF 222
             H V+G+  E+++A+S+++ A   +  + +     F GG  G     D   +F + G  
Sbjct: 68  SPHAVDGNTVELKRAVSREDSARPGAHAKVKK---LFVGGLKGDVAEGDLIEHFSQFGTV 124

Query: 223 SGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYG---SGGQGYGNQGS 279
                    + G      G G+  F N               +G+           +  S
Sbjct: 125 EKAEIIADKQSGKK---RGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181

Query: 280 GYGGSGSYDSYNNGGGGGFGGG---SGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGR 336
           G GG GS  S    GG G GGG   +G + GGGG YN +G Y           GG  GG 
Sbjct: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYG----------GGGGGGY 231

Query: 337 SSGPYGGGGQYFAKPRNQGGYGGSSS----SSSYG 367
           ++   GGGG  +       G+GG  S     SSYG
Sbjct: 232 NAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYG 266


>gi|239747524 PREDICTED: similar to serum response factor-related
           protein C4 [Homo sapiens]
          Length = 434

 Score =  254 bits (648), Expect = 1e-67
 Identities = 114/128 (89%), Positives = 118/128 (92%)

Query: 239 GSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGF 298
           G GDGYNGFGNDGGYGGGGPGYSGGSRGYGS GQGYG+QGSGYGGSGSY+SYNNGGGG F
Sbjct: 46  GRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSF 105

Query: 299 GGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYG 358
           GGGSGS+FGG GSYNDFGNYNNQSSNFGP KGGNFGGRSS P GGGGQYF KP+NQGGYG
Sbjct: 106 GGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYG 165

Query: 359 GSSSSSSY 366
           GSSSS  Y
Sbjct: 166 GSSSSRHY 173



 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 188 SASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGF 247
           S S +     G G+FGGG G  FGG+ ++   GN++ +    G   GG +GG      G 
Sbjct: 91  SGSYNSYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGG 150

Query: 248 G--------NDGGYGGGGPGYSGGSRGY 267
           G        N GGYGG     S  SR Y
Sbjct: 151 GGQYFVKPQNQGGYGG-----SSSSRHY 173



 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 293 GGGGGFGG-GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKP 351
           G G G+ G G+   +GGGG       Y+  S  +G + G  +G + SG YGG G Y +  
Sbjct: 46  GRGDGYNGFGNDGGYGGGGP-----GYSGGSRGYGSV-GQGYGSQGSG-YGGSGSYNSYN 98

Query: 352 RNQGG-YGGSSSSSSYGSG 369
              GG +GG S SS  GSG
Sbjct: 99  NGGGGSFGGGSGSSFGGSG 117



 Score = 35.8 bits (81), Expect = 0.064
 Identities = 15/19 (78%), Positives = 18/19 (94%)

Query: 1  MSKSESPKEPEQLRKLFIG 19
          +S SESPKEP+QLRKLF+G
Sbjct: 28 LSNSESPKEPKQLRKLFLG 46



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 12/69 (17%)

Query: 307 GGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQG-GYGGSSS--S 363
           G G  YN FGN            G  + G S G YG  GQ +    +QG GYGGS S  S
Sbjct: 46  GRGDGYNGFGNDGGYGGG-----GPGYSGGSRG-YGSVGQGYG---SQGSGYGGSGSYNS 96

Query: 364 SSYGSGRRF 372
            + G G  F
Sbjct: 97  YNNGGGGSF 105


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
           [Homo sapiens]
          Length = 336

 Score =  201 bits (511), Expect = 9e-52
 Identities = 113/282 (40%), Positives = 166/282 (58%), Gaps = 19/282 (6%)

Query: 2   SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
           +K ++ K  E   K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV 
Sbjct: 66  AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125

Query: 62  YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
           +   E VD  M+ + HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179

Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
           R+YF  +G++E IE+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239

Query: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-GNF--SGRGGFG-GSRGGGGY 237
           SK++       Q+  S  G  G  RG G G + N+ +G  N+   G G +G  S+G GGY
Sbjct: 240 SKEQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGY 296

Query: 238 GGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGS 279
           GG    Y G+ N  GYG     YS    GYG   +  G+Q S
Sbjct: 297 GGY--DYTGYNNYYGYG----DYSNQQSGYGKVSRRGGHQNS 332



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 293 GGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 352
           G  GGF G +    GGG S N    +N   SN+     GN+G  S G  G GG  +    
Sbjct: 251 GSRGGFAGRARGR-GGGPSQN----WNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYN 305

Query: 353 NQGGYGG-SSSSSSYGSGRR 371
           N  GYG  S+  S YG   R
Sbjct: 306 NYYGYGDYSNQQSGYGKVSR 325



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 247 FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNF 306
           FG DG          GGS G   G      QG+             G G G GGG+ S  
Sbjct: 6   FGGDGA-AAAATAAVGGSAGEQEGAMVAATQGAAAAA---------GSGAGTGGGTASGG 55

Query: 307 GGGGSYNDFGNYNNQSSN 324
             GGS    G   + S N
Sbjct: 56  TEGGSAESEGAKIDASKN 73


>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
           [Homo sapiens]
          Length = 332

 Score =  199 bits (506), Expect = 3e-51
 Identities = 106/279 (37%), Positives = 161/279 (57%), Gaps = 21/279 (7%)

Query: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
           K  E   K+F+GGLS++T+ + L+ +F ++G + DC +  DPNT RSRGFGF+ +     
Sbjct: 64  KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123

Query: 68  VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
           V+  ++ + H++DGRV++PK+A++ +          VKKIFVGG+  +  E  +R+YF +
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176

Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ--E 185
           +G+IE IE+  D    K+RGF F+TF + + V K++ +K+HTV+G  CE++ A  K+  +
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236

Query: 186 MASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGG--SRGGGGYGGSGDG 243
                S  RG    GN G G GGG GG          S   G+G   ++G G   G G G
Sbjct: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQ-------SWNQGYGNYWNQGYGYQQGYGPG 289

Query: 244 YNGFG-NDGGYGGGGPG--YSGGSRGYGSGGQGYGNQGS 279
           Y G+  +  GY G GPG  YS GS  YG   +  G+Q +
Sbjct: 290 YGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNN 328



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 29/95 (30%), Positives = 50/95 (52%)

Query: 3   KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           K     + + ++K+F+GGL+ E T+E +R +F ++G +    +  DP   + RGF F+T+
Sbjct: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202

Query: 63  ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
              E V   +  + H V G   E K A  +E  Q+
Sbjct: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 35/98 (35%), Positives = 43/98 (43%), Gaps = 11/98 (11%)

Query: 274 YGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNF 333
           Y  Q  G GG G+ +  N G GGG GGG  S     G    +GNY NQ   +    G  +
Sbjct: 235 YQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQG----YGNYWNQGYGYQQGYGPGY 290

Query: 334 GGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRR 371
           GG    PYG  G          GY  S  S++YG  +R
Sbjct: 291 GGYDYSPYGYYGY-------GPGYDYSQGSTNYGKSQR 321


>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
           [Homo sapiens]
          Length = 355

 Score =  198 bits (503), Expect = 7e-51
 Identities = 112/280 (40%), Positives = 164/280 (58%), Gaps = 19/280 (6%)

Query: 4   SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
           SE+     +  K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV + 
Sbjct: 87  SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146

Query: 64  TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
             E VD  M+ + HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +R+
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200

Query: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
           YF  +G++E IE+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+SK
Sbjct: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260

Query: 184 QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-GNF--SGRGGFG-GSRGGGGYGG 239
           ++       Q+  S  G  G  RG G G + N+ +G  N+   G G +G  S+G GGYGG
Sbjct: 261 EQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGG 317

Query: 240 SGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGS 279
               Y G+ N  GYG     YS    GYG   +  G+Q S
Sbjct: 318 Y--DYTGYNNYYGYG----DYSNQQSGYGKVSRRGGHQNS 351



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/95 (32%), Positives = 53/95 (55%)

Query: 3   KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           ++++ K  E ++K+F+GGLS +T +E +R +F  +G +    +  D  T + RGF F+T+
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230

Query: 63  ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
              E V   M  + H V     E K A+S+E  Q+
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 293 GGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 352
           G  GGF G +    GGG S N    +N   SN+     GN+G  S G  G GG  +    
Sbjct: 270 GSRGGFAGRARGR-GGGPSQN----WNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYN 324

Query: 353 NQGGYGG-SSSSSSYGSGRR 371
           N  GYG  S+  S YG   R
Sbjct: 325 NYYGYGDYSNQQSGYGKVSR 344



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 247 FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNF 306
           FG DG          GGS G   G      QG+             G G G GGG+ S  
Sbjct: 6   FGGDGA-AAAATAAVGGSAGEQEGAMVAATQGAAAAA---------GSGAGTGGGTASGG 55

Query: 307 GGGGSYNDFGNYNNQSSN 324
             GGS    G   + S N
Sbjct: 56  TEGGSAESEGAKIDASKN 73


>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
           sapiens]
          Length = 420

 Score =  196 bits (498), Expect = 3e-50
 Identities = 106/290 (36%), Positives = 161/290 (55%), Gaps = 18/290 (6%)

Query: 2   SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
           SK  + K  +   K+FIGGLS++T+ + L  +  ++G + DC +  DP T RSRGFGFV 
Sbjct: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195

Query: 62  YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
           +     VD  +  + HK+DG++++PKRA + +  + P      KK+FVGG+  DT E  +
Sbjct: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249

Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
           ++YF  +G+IE IE+  D  + ++RGF F+T+ D + V K++  +YH +    CE++ A 
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309

Query: 182 SKQEMASASSSQRGRSG--SGNFGGGRGGGFGGNDNFGRG-GNFSGRG------GFGGSR 232
            K+        Q+G  G  +G  GG RG G G   N+ +G  N+  +G       +GG +
Sbjct: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369

Query: 233 GGGGYGG-SGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGY 281
              GYGG    GYN +GN  GYG G   YSG    YG   +G GN  + Y
Sbjct: 370 NYSGYGGYDYTGYN-YGN-YGYGQGYADYSGQQSTYGKASRGGGNHQNNY 417


>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
           [Homo sapiens]
          Length = 285

 Score =  177 bits (450), Expect = 1e-44
 Identities = 87/223 (39%), Positives = 137/223 (61%), Gaps = 17/223 (7%)

Query: 8   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
           K  E   K+F+GGLS++T+ + L+ +F ++G + DC +  DPNT RSRGFGF+ +     
Sbjct: 64  KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123

Query: 68  VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
           V+  ++ + H++DGRV++PK+A++ +          VKKIFVGG+  +  E  +R+YF +
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176

Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK---- 183
           +G+IE IE+  D    K+RGF F+TF + + V K++ +K+HTV+G  CE++ A  K    
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236

Query: 184 -QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFG----RGGN 221
            Q+  S     R R   G+ GGG GGG  G+ N+G    RGG+
Sbjct: 237 QQQYGSGGRGNRNRGNRGS-GGGGGGGGQGSTNYGKSQRRGGH 278



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 29/95 (30%), Positives = 50/95 (52%)

Query: 3   KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           K     + + ++K+F+GGL+ E T+E +R +F ++G +    +  DP   + RGF F+T+
Sbjct: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202

Query: 63  ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
              E V   +  + H V G   E K A  +E  Q+
Sbjct: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237



 Score = 36.2 bits (82), Expect = 0.049
 Identities = 19/47 (40%), Positives = 23/47 (48%)

Query: 274 YGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNN 320
           Y  Q  G GG G+ +  N G GGG GGG   +   G S    G+ NN
Sbjct: 235 YQQQQYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNN 281



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 8/53 (15%)

Query: 267 YGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGS-GSNFGGGGSYNDFGNY 318
           YGSGG+G  N+G+   G G       GGGGG G  + G +   GG  N++  Y
Sbjct: 240 YGSGGRGNRNRGNRGSGGG-------GGGGGQGSTNYGKSQRRGGHQNNYKPY 285



 Score = 32.0 bits (71), Expect = 0.92
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 253 YGGGGPGYSG-GSRGYGSGGQGYGNQGSGYGGSGSYDSYNN 292
           YG GG G    G+RG G GG G G   + YG S     + N
Sbjct: 240 YGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQN 280


>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
           [Homo sapiens]
          Length = 287

 Score =  175 bits (444), Expect = 5e-44
 Identities = 93/230 (40%), Positives = 139/230 (60%), Gaps = 12/230 (5%)

Query: 2   SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
           +K ++ K  E   K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV 
Sbjct: 66  AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125

Query: 62  YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
           +   E VD  M+ + HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179

Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
           R+YF  +G++E IE+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239

Query: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGS 231
           SK++       Q+ + GS     GR  G GG+   G  G  S RGG   S
Sbjct: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 283



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 247 FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNF 306
           FG DG          GGS G   G      QG+             G G G GGG+ S  
Sbjct: 6   FGGDGA-AAAATAAVGGSAGEQEGAMVAATQGAAAAA---------GSGAGTGGGTASGG 55

Query: 307 GGGGSYNDFGNYNNQSSN 324
             GGS    G   + S N
Sbjct: 56  TEGGSAESEGAKIDASKN 73


>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
           [Homo sapiens]
          Length = 306

 Score =  172 bits (436), Expect = 4e-43
 Identities = 92/228 (40%), Positives = 137/228 (60%), Gaps = 12/228 (5%)

Query: 4   SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
           SE+     +  K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV + 
Sbjct: 87  SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146

Query: 64  TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
             E VD  M+ + HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +R+
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200

Query: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
           YF  +G++E IE+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+SK
Sbjct: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260

Query: 184 QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGS 231
           ++       Q+ + GS     GR  G GG+   G  G  S RGG   S
Sbjct: 261 EQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 302



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/95 (32%), Positives = 53/95 (55%)

Query: 3   KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           ++++ K  E ++K+F+GGLS +T +E +R +F  +G +    +  D  T + RGF F+T+
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230

Query: 63  ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
              E V   M  + H V     E K A+S+E  Q+
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 247 FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNF 306
           FG DG          GGS G   G      QG+             G G G GGG+ S  
Sbjct: 6   FGGDGA-AAAATAAVGGSAGEQEGAMVAATQGAAAAA---------GSGAGTGGGTASGG 55

Query: 307 GGGGSYNDFGNYNNQSSN 324
             GGS    G   + S N
Sbjct: 56  TEGGSAESEGAKIDASKN 73


>gi|20373175 musashi 2 isoform a [Homo sapiens]
          Length = 328

 Score =  166 bits (420), Expect = 3e-41
 Identities = 115/344 (33%), Positives = 167/344 (48%), Gaps = 43/344 (12%)

Query: 2   SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
           S ++S  +P    K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT
Sbjct: 12  SANDSQHDPG---KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68

Query: 62  YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
           +A    VD  +    H++D + ++PK A  R    +P      KKIFVGG+  +T    +
Sbjct: 69  FADPASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDV 126

Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
           + YFEQ+GK+E   +M D+ + + RGF FVTF++ D V+K+    +H +N    E +KA 
Sbjct: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186

Query: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSG 241
            K+ M             G  G  RG  +   D F  G    G   F  +         G
Sbjct: 187 PKEVMFP----------PGTRGRARGLPY-TMDAFMLGMGMLGYPNFVAT--------YG 227

Query: 242 DGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGG 301
            GY GF     YG   PG+   + G  +       +GSG          N    GGF G 
Sbjct: 228 RGYPGFA--PSYGYQFPGFPAAAYGPVAAAAVAAARGSG---------SNPARPGGFPGA 276

Query: 302 SGSN-----FGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGP 340
           +        +G     +  GNY + +S   P  G  FG   +GP
Sbjct: 277 NSPGPVADLYGPASQDSGVGNYISAAS---PQPGSGFGHGIAGP 317


>gi|4505255 musashi 1 [Homo sapiens]
          Length = 362

 Score =  160 bits (405), Expect = 2e-39
 Identities = 94/240 (39%), Positives = 131/240 (54%), Gaps = 13/240 (5%)

Query: 6   SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
           SP  P    K+FIGGLS++TT E LR +F Q+G + +C+VMRDP TKRSRGFGFVT+   
Sbjct: 12  SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71

Query: 66  EEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
             VD  +    H++D + ++PK A  R    +P      KKIFVGG+  +T    ++ YF
Sbjct: 72  AGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYF 129

Query: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
           EQ+GK++   +M D+ + + RGF FVTF+  D V+K+    +H +N    E +KA  K E
Sbjct: 130 EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK-E 188

Query: 186 MASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSR-GGGGYGGSGDGY 244
           + S + S RGRS    +         G D F  G    G  GF  +      Y G   GY
Sbjct: 189 VMSPTGSARGRSRVMPY---------GMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 239


>gi|25121993 musashi 2 isoform b [Homo sapiens]
          Length = 251

 Score =  155 bits (391), Expect = 7e-38
 Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 2/182 (1%)

Query: 15  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
           K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT+A    VD  +  
Sbjct: 18  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77

Query: 75  RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
             H++D + ++PK A  R    +P      KKIFVGG+  +T    ++ YFEQ+GK+E  
Sbjct: 78  PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135

Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194
            +M D+ + + RGF FVTF++ D V+K+    +H +N    E +KA  K+ M    +  R
Sbjct: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195

Query: 195 GR 196
            R
Sbjct: 196 AR 197



 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 35/93 (37%), Positives = 56/93 (60%)

Query: 7   PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
           PK   + +K+F+GGLS  T  E ++ +FEQ+G + D ++M D  T R RGFGFVT+   +
Sbjct: 99  PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158

Query: 67  EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG 99
            V+       H+++ ++VE K+A  +E    PG
Sbjct: 159 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191


>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
          Length = 589

 Score =  147 bits (371), Expect = 2e-35
 Identities = 121/346 (34%), Positives = 153/346 (44%), Gaps = 71/346 (20%)

Query: 92  REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE--------VIEIMTDRGSG 143
           R D+     +     IFV G+ E      + ++F+Q G I+        +I + TD+ +G
Sbjct: 218 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 277

Query: 144 KKRGFAFVTFDDHDS----VDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS 199
           K +G A V+FDD  S    +D    +++H   G+  +V  A  + E      S  GR G 
Sbjct: 278 KPKGEATVSFDDPPSAKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGR 334

Query: 200 GNFGG-----GRGGG-----------FGGNDNFGR------------------GGNFSGR 225
           G + G     GRGG              GN NF R                  GG+F GR
Sbjct: 335 GGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGR 394

Query: 226 --GGFGGSRGGGGYGGSGDGYNGFGNDGGYGG---GGPGYSGGSRGYGSGGQ----GY-G 275
             GG  G RG GG GG   GY G  + GGYGG    G GYSG   G G GG     GY G
Sbjct: 395 GYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGG 454

Query: 276 NQGSGYGG--SGSYDSYNNGG----GGGFGGGSGSNFGG--GGSYNDFGNYNNQSSNFGP 327
           ++G GYGG   G Y     GG     GG+GG  G  +GG  GG   D G Y      +G 
Sbjct: 455 DRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGG 514

Query: 328 MKGGNFGGRSSGPYG---GGGQYFAKPRNQGGYGGSSSSSSYGSGR 370
            +GG  G RS G YG   GGG  +   R+ GGYGG  S   YG  R
Sbjct: 515 DRGGYGGDRSRGGYGGDRGGGSGYGGDRS-GGYGGDRSGGGYGGDR 559



 Score =  124 bits (311), Expect = 1e-28
 Identities = 81/178 (45%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 193 QRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG--SGDGYNGFGND 250
           +RG  G G  GG RGG  G     G GG+ S  GG+ G R GGGYGG  SG GY G    
Sbjct: 399 ERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGG-DRG 457

Query: 251 GGYGGGGPGYSGGSRGYGSGGQ--GY-GNQGSGYGGS-GSYDSYNNGGGGGFG--GGSGS 304
           GGYGG   G  GG RG G GG   GY G++G GYGG  G Y     G GG  G  GG   
Sbjct: 458 GGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRG 517

Query: 305 NFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG-RSSGPYGG--GGQYFAKPRNQGGYGG 359
            +GG  S   +G      S +G  + G +GG RS G YGG  GG Y     ++GGYGG
Sbjct: 518 GYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGG---DRGGYGG 572



 Score =  107 bits (267), Expect = 2e-23
 Identities = 66/140 (47%), Positives = 74/140 (52%), Gaps = 22/140 (15%)

Query: 196 RSGSGNFGGGRGGGFGGNDNFG----RGGNFSG-RGGFGGSRGGGGYGGSGDGYNGFGND 250
           RSG G +GG RGGG+GG+   G    RGG + G RGG+GG RGGG YGG   GY G  + 
Sbjct: 447 RSGGG-YGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGG-YGGDRGGYGG--DR 502

Query: 251 GGYGGGGPGYSGGSRGYGS------------GGQGYGNQGSG-YGGSGSYDSYNNGGGGG 297
           GGYGG   GY G   GYG             GG GYG   SG YGG  S   Y    GGG
Sbjct: 503 GGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGG 562

Query: 298 FGGGSGSNFGGGGSYNDFGN 317
           +GG  G   G  G  ND+ N
Sbjct: 563 YGGDRGGYGGKMGGRNDYRN 582



 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 215 NFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGN--DGGYGGGGPGYSGGSRGYGSGGQ 272
           ++G+ G         G+ G  GYG +   Y+G+G   D  YG    GYS   + Y     
Sbjct: 6   SYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSYG 65

Query: 273 GYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYN--DFG---NYNNQS 322
           GY NQ      S S   YNN G       SGS  G   SY+  D+G   +Y+ QS
Sbjct: 66  GYENQKQS---SYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQS 117



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 176 EVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGG- 234
           E +K  S  +    +  Q+    S    GGR   +   D +G+  ++  + G+   +G  
Sbjct: 68  ENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPD-YGQQDSYDQQSGYDQHQGSY 126

Query: 235 ---GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRG-------YGSGGQGYGNQGSGYGGS 284
                Y    D Y+   N   Y      YS  ++        YG   +GYG    G  G 
Sbjct: 127 DEQSNYDQQHDSYSQ--NQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGR 184

Query: 285 GSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFG 316
           G YD    G   G  GG    F   G + D+G
Sbjct: 185 GGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYG 216



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 36/130 (27%), Positives = 47/130 (36%), Gaps = 17/130 (13%)

Query: 249 NDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSG----SYDSYNNGGGGGFGGGSGS 304
           + G YG  G      S     G QGYG     Y G G    S    N  G   +G     
Sbjct: 3   DSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQ 62

Query: 305 NFGG-----GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSG----PYGGGGQYFAK---PR 352
           ++GG       SY+    YNNQ         G+ GGR+       YG    Y  +    +
Sbjct: 63  SYGGYENQKQSSYSQ-QPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQ 121

Query: 353 NQGGYGGSSS 362
           +QG Y   S+
Sbjct: 122 HQGSYDEQSN 131



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 275 GNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFG--------GGGSYNDFGNY-NNQSSNF 325
           G+ G   G   SY +Y N G  G+G  S S  G         G +Y+ + +Y  + S ++
Sbjct: 5   GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSY 64

Query: 326 GPMKGGNFGGRSSGPYGGGGQY--FAKPRNQGGYGGSSSSSSYG 367
           G  +       S  PY   GQ        +QGG   S     YG
Sbjct: 65  GGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYG 108



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 212 GNDNFGRGGNF---SGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYG 268
           G DN G GG+     GRGG+     G   G SG    GF N GG+   GP     S    
Sbjct: 168 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGPRTDADSESDN 227

Query: 269 SGGQGYGNQGSGYGGS 284
           S       QG G G S
Sbjct: 228 SDNNTIFVQGLGEGVS 243



 Score = 32.3 bits (72), Expect = 0.70
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 231 SRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSY 290
           +RG GG  G G G  G+  DG   G   G SGG RG      G+ + G         D+ 
Sbjct: 171 NRGYGGSQGGGRGRGGYDKDGR--GPMTGSSGGDRGGFKNFGGHRDYGPRTDADSESDNS 228

Query: 291 NN 292
           +N
Sbjct: 229 DN 230


>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
          Length = 592

 Score =  147 bits (371), Expect = 2e-35
 Identities = 121/346 (34%), Positives = 153/346 (44%), Gaps = 71/346 (20%)

Query: 92  REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE--------VIEIMTDRGSG 143
           R D+     +     IFV G+ E      + ++F+Q G I+        +I + TD+ +G
Sbjct: 221 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 280

Query: 144 KKRGFAFVTFDDHDS----VDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS 199
           K +G A V+FDD  S    +D    +++H   G+  +V  A  + E      S  GR G 
Sbjct: 281 KPKGEATVSFDDPPSAKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGR 337

Query: 200 GNFGG-----GRGGG-----------FGGNDNFGR------------------GGNFSGR 225
           G + G     GRGG              GN NF R                  GG+F GR
Sbjct: 338 GGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGR 397

Query: 226 --GGFGGSRGGGGYGGSGDGYNGFGNDGGYGG---GGPGYSGGSRGYGSGGQ----GY-G 275
             GG  G RG GG GG   GY G  + GGYGG    G GYSG   G G GG     GY G
Sbjct: 398 GYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGG 457

Query: 276 NQGSGYGG--SGSYDSYNNGG----GGGFGGGSGSNFGG--GGSYNDFGNYNNQSSNFGP 327
           ++G GYGG   G Y     GG     GG+GG  G  +GG  GG   D G Y      +G 
Sbjct: 458 DRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGG 517

Query: 328 MKGGNFGGRSSGPYG---GGGQYFAKPRNQGGYGGSSSSSSYGSGR 370
            +GG  G RS G YG   GGG  +   R+ GGYGG  S   YG  R
Sbjct: 518 DRGGYGGDRSRGGYGGDRGGGSGYGGDRS-GGYGGDRSGGGYGGDR 562



 Score =  124 bits (311), Expect = 1e-28
 Identities = 81/178 (45%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 193 QRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG--SGDGYNGFGND 250
           +RG  G G  GG RGG  G     G GG+ S  GG+ G R GGGYGG  SG GY G    
Sbjct: 402 ERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGG-DRG 460

Query: 251 GGYGGGGPGYSGGSRGYGSGGQ--GY-GNQGSGYGGS-GSYDSYNNGGGGGFG--GGSGS 304
           GGYGG   G  GG RG G GG   GY G++G GYGG  G Y     G GG  G  GG   
Sbjct: 461 GGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRG 520

Query: 305 NFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG-RSSGPYGG--GGQYFAKPRNQGGYGG 359
            +GG  S   +G      S +G  + G +GG RS G YGG  GG Y     ++GGYGG
Sbjct: 521 GYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGG---DRGGYGG 575



 Score =  107 bits (267), Expect = 2e-23
 Identities = 66/140 (47%), Positives = 74/140 (52%), Gaps = 22/140 (15%)

Query: 196 RSGSGNFGGGRGGGFGGNDNFG----RGGNFSG-RGGFGGSRGGGGYGGSGDGYNGFGND 250
           RSG G +GG RGGG+GG+   G    RGG + G RGG+GG RGGG YGG   GY G  + 
Sbjct: 450 RSGGG-YGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGG-YGGDRGGYGG--DR 505

Query: 251 GGYGGGGPGYSGGSRGYGS------------GGQGYGNQGSG-YGGSGSYDSYNNGGGGG 297
           GGYGG   GY G   GYG             GG GYG   SG YGG  S   Y    GGG
Sbjct: 506 GGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGG 565

Query: 298 FGGGSGSNFGGGGSYNDFGN 317
           +GG  G   G  G  ND+ N
Sbjct: 566 YGGDRGGYGGKMGGRNDYRN 585



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 215 NFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGN--DGGYGGGGPGYSGGSRGYGSGGQ 272
           ++G+ G         G+ G  GYG +   Y+G+G   D  YG    GYS   +      Q
Sbjct: 6   SYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQ 65

Query: 273 GYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYN--DFG---NYNNQS 322
            YG   +    S S   YNN G       SGS  G   SY+  D+G   +Y+ QS
Sbjct: 66  SYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQS 120



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 176 EVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGG- 234
           E +K  S  +    +  Q+    S    GGR   +   D +G+  ++  + G+   +G  
Sbjct: 71  ENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPD-YGQQDSYDQQSGYDQHQGSY 129

Query: 235 ---GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRG-------YGSGGQGYGNQGSGYGGS 284
                Y    D Y+   N   Y      YS  ++        YG   +GYG    G  G 
Sbjct: 130 DEQSNYDQQHDSYSQ--NQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGR 187

Query: 285 GSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFG 316
           G YD    G   G  GG    F   G + D+G
Sbjct: 188 GGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYG 219



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 41/137 (29%), Positives = 55/137 (40%), Gaps = 16/137 (11%)

Query: 235 GGYGGSG---DGYNGFGNDG--GYGGGGPGYSGGSRGYG-SGGQGYGNQGSGYGGSGSYD 288
           G YG SG     Y+ +GN G  GYG     YSG    YG +    YG   SGY   G   
Sbjct: 5   GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSG----YGQTTDSSYGQNYSGYSSYGQSQ 60

Query: 289 SYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYF 348
           S  +   GG+     S++     YN+ G   N  S+    +GG         YG    Y 
Sbjct: 61  SGYSQSYGGYENQKQSSY-SQQPYNNQGQQQNMESS--GSQGGRAPSYDQPDYGQQDSYD 117

Query: 349 AK---PRNQGGYGGSSS 362
            +    ++QG Y   S+
Sbjct: 118 QQSGYDQHQGSYDEQSN 134



 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 50/207 (24%), Positives = 68/207 (32%), Gaps = 32/207 (15%)

Query: 190 SSSQRGRSGSGNFGGGRGG--GFGGNDNFGRGGNFSGRGGFGGSRGG--GGYGG------ 239
           S S  G  GS  +G       G+G   +   G N+SG   +G S+ G    YGG      
Sbjct: 16  SYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQKQ 75

Query: 240 ---SGDGYNGFG------NDGGYGGGGPGYSG---GSRGYGSGGQGYGNQGSGYGGSGSY 287
              S   YN  G      + G  GG  P Y     G +       GY      Y    +Y
Sbjct: 76  SSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNY 135

Query: 288 ----DSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY-- 341
               DSY+             +        D   Y   +  +G  +G   GGR  G Y  
Sbjct: 136 DQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQG---GGRGRGGYDK 192

Query: 342 -GGGGQYFAKPRNQGGYGGSSSSSSYG 367
            G G    +   ++GG+        YG
Sbjct: 193 DGRGPMTGSSGGDRGGFKNFGGHRDYG 219



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 32/121 (26%), Positives = 40/121 (33%), Gaps = 14/121 (11%)

Query: 249 NDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGG 308
           + G YG  G      S     G QGYG     Y G G   + ++  G  + G S      
Sbjct: 3   DSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQ--TTDSSYGQNYSGYSSYGQSQ 60

Query: 309 GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQY--FAKPRNQGGYGGSSSSSSY 366
            G    +G Y NQ  +            S  PY   GQ        +QGG   S     Y
Sbjct: 61  SGYSQSYGGYENQKQS----------SYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDY 110

Query: 367 G 367
           G
Sbjct: 111 G 111



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 212 GNDNFGRGGNF---SGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYG 268
           G DN G GG+     GRGG+     G   G SG    GF N GG+   GP     S    
Sbjct: 171 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGPRTDADSESDN 230

Query: 269 SGGQGYGNQGSGYGGS 284
           S       QG G G S
Sbjct: 231 SDNNTIFVQGLGEGVS 246



 Score = 32.3 bits (72), Expect = 0.70
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 231 SRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSY 290
           +RG GG  G G G  G+  DG   G   G SGG RG      G+ + G         D+ 
Sbjct: 174 NRGYGGSQGGGRGRGGYDKDGR--GPMTGSSGGDRGGFKNFGGHRDYGPRTDADSESDNS 231

Query: 291 NN 292
           +N
Sbjct: 232 DN 233


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score =  145 bits (366), Expect = 6e-35
 Identities = 96/292 (32%), Positives = 143/292 (48%), Gaps = 30/292 (10%)

Query: 11  EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
           +++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D  T +SRGFGFV +     V  
Sbjct: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66

Query: 71  AMNARPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
            + +RPH +DGR ++PK    R    +  RP           +    KIFVGGI  +  E
Sbjct: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126

Query: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
             LR+YF+++G +  + ++ D    + RGF F+TF+D  SVD+ V   +H + G   EV+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186

Query: 179 KALSKQEMASA----SSSQRGRSGSGNFGGGRGG--------GFGGNDNFGRGGNFSGRG 226
           +A  +   + A     +SQ G     N   G  G        G+G    +   G     G
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG--QAIG 244

Query: 227 GFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQ---GYG 275
           G+G    G G       +  +       GG P   G  +GYG+  Q   GYG
Sbjct: 245 GYGPPPAGRGAPPPPPPFTSY-IVSTPPGGFPPPQGFPQGYGAPPQFSFGYG 295


>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score =  145 bits (366), Expect = 6e-35
 Identities = 96/292 (32%), Positives = 143/292 (48%), Gaps = 30/292 (10%)

Query: 11  EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
           +++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D  T +SRGFGFV +     V  
Sbjct: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66

Query: 71  AMNARPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
            + +RPH +DGR ++PK    R    +  RP           +    KIFVGGI  +  E
Sbjct: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126

Query: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
             LR+YF+++G +  + ++ D    + RGF F+TF+D  SVD+ V   +H + G   EV+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186

Query: 179 KALSKQEMASA----SSSQRGRSGSGNFGGGRGG--------GFGGNDNFGRGGNFSGRG 226
           +A  +   + A     +SQ G     N   G  G        G+G    +   G     G
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG--QAIG 244

Query: 227 GFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQ---GYG 275
           G+G    G G       +  +       GG P   G  +GYG+  Q   GYG
Sbjct: 245 GYGPPPAGRGAPPPPPPFTSY-IVSTPPGGFPPPQGFPQGYGAPPQFSFGYG 295



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 18/57 (31%), Positives = 23/57 (40%)

Query: 235 GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYN 291
           G Y G G   +GFG         P   GG    GSGG   G  G G G + +   ++
Sbjct: 347 GQYAGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGFH 403



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 259 GYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYN-NGGGGGFGGGSGSNFGGGGSY 312
           GY     G+G G      Q   YGG     S     GG GFG G   N  G   Y
Sbjct: 351 GYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGFHPY 405


>gi|55956899 keratin 9 [Homo sapiens]
          Length = 623

 Score =  129 bits (325), Expect = 3e-30
 Identities = 80/187 (42%), Positives = 97/187 (51%), Gaps = 29/187 (15%)

Query: 183 KQEMASASSSQRGRSGSGNFGG--GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
           +++  S+ + + G  G G  GG  GRG   G   ++G GG+  G GG  GSRGG G    
Sbjct: 462 QEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYG 521

Query: 241 GDGYNGFGNDGGYGGG-GPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFG 299
           G   +G G+ GGYGGG G G+SGGS G  SGG G GN G G G  G       G GGG+G
Sbjct: 522 GGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSG-GNYGGGSGSGG-------GSGGGYG 573

Query: 300 GGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 359
           GGSGS  G GGS+                 G  FGG S G YGGG +      + GGYGG
Sbjct: 574 GGSGSRGGSGGSHGG---------------GSGFGGESGGSYGGGEE---ASGSGGGYGG 615

Query: 360 SSSSSSY 366
            S  SS+
Sbjct: 616 GSGKSSH 622



 Score =  102 bits (255), Expect = 4e-22
 Identities = 74/172 (43%), Positives = 82/172 (47%), Gaps = 41/172 (23%)

Query: 211 GGNDNFGRGG----NFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRG 266
           GG ++F   G       GRGG GGS G G  GGSG  Y G G+ GGYGGG      GSRG
Sbjct: 460 GGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGS-----GSRG 514

Query: 267 YGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFG 326
            GSGG  YG      GGSGS        GGG GGG G   GGG S    G ++  S    
Sbjct: 515 -GSGGS-YG------GGSGS--------GGGSGGGYGGGSGGGHSGGSGGGHSGGS---- 554

Query: 327 PMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS---------SSSSSYGSG 369
              GGN+GG S    G GG Y     ++GG GGS          S  SYG G
Sbjct: 555 ---GGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGG 603



 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 63/155 (40%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 190 SSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGN 249
           SSS   RSG G  GGG G G     ++ R  +  G GG G      GYGG      G G 
Sbjct: 7   SSSYLSRSGGGG-GGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGG 65

Query: 250 DGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGG-SGSYDSYNNGGGGGFGGGSGSNFGG 308
            G +G    G SGG     S G G+G    G+GG SG   S + G GGGFGGGSG  FGG
Sbjct: 66  GGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGG 125

Query: 309 GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG 343
           G             S FG    G FGG + G  GG
Sbjct: 126 G-----------YGSGFGGF--GGFGGGAGGGDGG 147



 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 53/125 (42%), Positives = 62/125 (49%), Gaps = 20/125 (16%)

Query: 188 SASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGF 247
           S  SS  G  G G F    G G G +   GRGG     G FG S G    GGSG G++  
Sbjct: 33  SRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGG----GSFGYSYG----GGSGGGFSAS 84

Query: 248 GNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFG 307
              GG+GGG  G+ G S      G GY + G G+GG      +  G GGGFGGG GS FG
Sbjct: 85  SLGGGFGGGSRGFGGAS------GGGYSSSG-GFGG-----GFGGGSGGGFGGGYGSGFG 132

Query: 308 GGGSY 312
           G G +
Sbjct: 133 GFGGF 137



 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 58/158 (36%), Positives = 70/158 (44%), Gaps = 29/158 (18%)

Query: 221 NFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGG-----PGYSGGSR---GYGSGGQ 272
           ++  R G GG  G G  G     Y+ F + GG GGGG      GY GGS    G G GG 
Sbjct: 9   SYLSRSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGS 68

Query: 273 GYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGN 332
              + G G GG  S  S   G GGG  G  G++   GG Y+  G +           GG 
Sbjct: 69  FGYSYGGGSGGGFSASSLGGGFGGGSRGFGGAS---GGGYSSSGGF-----------GGG 114

Query: 333 FGGRSSGPYGGG-GQYFAKPRNQGGYGGSSSSSSYGSG 369
           FGG S G +GGG G  F      GG+GG    +  G G
Sbjct: 115 FGGGSGGGFGGGYGSGF------GGFGGFGGGAGGGDG 146



 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 53/118 (44%), Positives = 62/118 (52%), Gaps = 22/118 (18%)

Query: 189 ASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGR---GGFGGSRGGGGYGGSGDGYN 245
           +SSS  G   S   G G GG FG +   G GG FS     GGFGG  G  G+GG+  G  
Sbjct: 48  SSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGG--GSRGFGGASGG-- 103

Query: 246 GFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSG 303
           G+ + GG+GGG  G SGG  G+G      G  GSG+GG G       G GGG GGG G
Sbjct: 104 GYSSSGGFGGGFGGGSGG--GFG------GGYGSGFGGFG-------GFGGGAGGGDG 146



 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 52/140 (37%), Positives = 56/140 (40%), Gaps = 42/140 (30%)

Query: 233 GGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNN 292
           G   +  SG G  G G  GG GG    Y  GSRG GSGG         YGG GS      
Sbjct: 461 GQEDFESSGAGKIGLGGRGGSGGS---YGRGSRG-GSGGS--------YGGGGS------ 502

Query: 293 GGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 352
             GGG+GGGSGS  G GGSY                      G  SG  GG G  +    
Sbjct: 503 --GGGYGGGSGSRGGSGGSY----------------------GGGSGSGGGSGGGYGGGS 538

Query: 353 NQGGYGGSSSSSSYGSGRRF 372
             G  GGS    S GSG  +
Sbjct: 539 GGGHSGGSGGGHSGGSGGNY 558



 Score = 38.9 bits (89), Expect = 0.008
 Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 286 SYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGG 345
           +Y +   GG   F        G GG     G+Y   S   G   G   GG S G YGGG 
Sbjct: 453 TYHNLLEGGQEDFESSGAGKIGLGGRGGSGGSYGRGSR--GGSGGSYGGGGSGGGYGGGS 510

Query: 346 QYFAKPRNQGGYGGSSSSSSYGSG 369
              ++  + G YGG S S   GSG
Sbjct: 511 G--SRGGSGGSYGGGSGSGG-GSG 531


>gi|6678271 TAR DNA binding protein [Homo sapiens]
          Length = 414

 Score =  124 bits (312), Expect = 1e-28
 Identities = 110/359 (30%), Positives = 154/359 (42%), Gaps = 56/359 (15%)

Query: 16  LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
           L + GL ++TT++ L+ +F  +G +    V +D  T  S+GFGFV +   E     M+ R
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165

Query: 76  PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
            H +DGR  + K   S++    P   L  +K+FVG   ED  E  LR++F QYG  +V++
Sbjct: 166 -HMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219

Query: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
           +   +     R FAFVTF D D + + +  +   + G +  +  A  K       +S R 
Sbjct: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269

Query: 196 RSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYG- 254
              SG FGG  GG             F  +GGFG SRGGG          G GN+ G   
Sbjct: 270 LERSGRFGGNPGG-------------FGNQGGFGNSRGGGA---------GLGNNQGSNM 307

Query: 255 GGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYND 314
           GGG  +   S              S +G  G   S  N       G SG+N   G    +
Sbjct: 308 GGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQ-----SGPSGNNQNQGNMQRE 362

Query: 315 ----FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSG 369
               FG+ NN  S  G   G   G  S+   G G  +       GG+G S  S S G G
Sbjct: 363 PNQAFGSGNNSYS--GSNSGAAIGWGSASNAGSGSGF------NGGFGSSMDSKSSGWG 413



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 58/264 (21%), Positives = 100/264 (37%), Gaps = 33/264 (12%)

Query: 2   SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
           +  +S  EP + RK+F+G  + + T++ LR  F Q+G + D  +      K  R F FVT
Sbjct: 179 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVT 233

Query: 62  YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
           +A  +++  ++      + G  V    A  + +S R            GG        + 
Sbjct: 234 FAD-DQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNS 292

Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
           R      G         ++GS    G  F  F  + ++          +      ++ + 
Sbjct: 293 RGGGAGLG--------NNQGSNMGGGMNFGAFSINPAM----------MAAAQAALQSSW 334

Query: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGG--GYGG 239
               M ++  +Q G SG+    G        N  FG G N      + GS  G   G+G 
Sbjct: 335 GMMGMLASQQNQSGPSGNNQNQGNMQR--EPNQAFGSGNN-----SYSGSNSGAAIGWGS 387

Query: 240 SGDGYNGFGNDGGYGGGGPGYSGG 263
           + +  +G G +GG+G      S G
Sbjct: 388 ASNAGSGSGFNGGFGSSMDSKSSG 411



 Score = 32.3 bits (72), Expect = 0.70
 Identities = 35/137 (25%), Positives = 48/137 (35%), Gaps = 46/137 (33%)

Query: 267 YGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGS------GSNFGGGGSYNDF----- 315
           +G    G+GNQG              G G   GGG+      GSN GGG ++  F     
Sbjct: 276 FGGNPGGFGNQG--------------GFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPA 321

Query: 316 ----------------GNYNNQSSNFGP----MKGGNFGGRSSGPYGGGGQYFAKPRNQG 355
                           G   +Q +  GP       GN     +  +G G   ++   N G
Sbjct: 322 MMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYS-GSNSG 380

Query: 356 GYGGSSSSSSYGSGRRF 372
              G  S+S+ GSG  F
Sbjct: 381 AAIGWGSASNAGSGSGF 397


>gi|109255251 loricrin [Homo sapiens]
          Length = 312

 Score =  115 bits (289), Expect = 5e-26
 Identities = 77/182 (42%), Positives = 87/182 (47%), Gaps = 11/182 (6%)

Query: 195 GRSGSGNFGGGRGGG--FGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGG 252
           G  G G FGGG  GG   G    +  GG +SG G  GGS GGGG GG G    G G    
Sbjct: 30  GGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGCGGGSGGSVK 89

Query: 253 YGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGS--GSYDSYNNGGGGGFGGGSGSNFGGGG 310
           Y GGG    GGS  + SGG G G   SG GGS  G    +++GGGG  GGGSG    GGG
Sbjct: 90  YSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGG 149

Query: 311 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY---GGGGQYFAKPRNQGGYGGSSSSSSYG 367
               F     Q  ++G +  G   G  SG +   GGGG          G GG SS  S G
Sbjct: 150 G---FSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGS-G 205

Query: 368 SG 369
           SG
Sbjct: 206 SG 207



 Score =  100 bits (248), Expect = 3e-21
 Identities = 76/199 (38%), Positives = 85/199 (42%), Gaps = 27/199 (13%)

Query: 195 GRSGSGNFGG--GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYG--GSGDGYNGFGND 250
           G SG G  GG  G GGG GG+  +  GG  SG G    S GGGG G   SG G +  G  
Sbjct: 67  GSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGS 126

Query: 251 GGYGGGGPGYSGGSRG-YGSGGQGYGNQ-------------GSGYGGSGSYDSYNNGG-- 294
           G +  GG G SGG  G + SGG G+  Q             GS  GGSG + S   GG  
Sbjct: 127 GCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSV 186

Query: 295 ----GGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAK 350
               GGG G G GS+ G G  Y         S    P  G   GG S G   GG   F+ 
Sbjct: 187 CGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYG---GGSSGGGGSGGSGCFSS 243

Query: 351 PRNQGGYGGSSSSSSYGSG 369
               G  G    SS  GSG
Sbjct: 244 GGGGGSSGCGGGSSGIGSG 262



 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 74/193 (38%), Positives = 83/193 (43%), Gaps = 37/193 (19%)

Query: 198 GSGNFGGGRG---GGFGGNDNFGRGGNFSGRGGFGG------SRGGGGYGGSGDGYNGFG 248
           G G+ GGG G    G GG+   G G   SG GGF G      S GG   GGS  G +G  
Sbjct: 118 GGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCF 177

Query: 249 NDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSG-----------SYDSYNNGGGGG 297
           + GG GG   GYSGG  G G GG   G  GSGY  S            SY   ++GGGG 
Sbjct: 178 SSGGGGGSVCGYSGG--GSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGS 235

Query: 298 FGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGY 357
            G G  S+ GGGGS                  GG   G  SG    GG       + GG 
Sbjct: 236 GGSGCFSSGGGGGSSG---------------CGGGSSGIGSGCIISGGGSVCGGGSSGGG 280

Query: 358 GGSSSSSSYGSGR 370
           GG SS    GSG+
Sbjct: 281 GGGSSVGGSGSGK 293



 Score = 83.2 bits (204), Expect = 3e-16
 Identities = 66/164 (40%), Positives = 72/164 (43%), Gaps = 35/164 (21%)

Query: 231 SRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSY 290
           S GGGG GGSG G  GF   GG GGG    SG   GY SGG GY   G G G SG     
Sbjct: 20  SGGGGGGGGSGGGGCGFFGGGGSGGGS---SGSGCGY-SGGGGYSGGGCGGGSSGG---- 71

Query: 291 NNGGGGGFG-------------GGSGSNFGGGGSYNDFGNYNN-QSSNFGPMKGGNFGGR 336
             GGGGG G             GG GS+ GG G ++  G  +   SS  G   GG  G  
Sbjct: 72  --GGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCF 129

Query: 337 SSGPYG-----------GGGQYFAKPRNQGGYGGSSSSSSYGSG 369
           SSG  G           GGG +  +      YGG SS  S G G
Sbjct: 130 SSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGG 173



 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 56/156 (35%), Positives = 62/156 (39%), Gaps = 41/156 (26%)

Query: 179 KALSKQEMASASSSQRGRSGSGNFGGGRGGGF-----GGNDNFGRGGNFSGRGGF----- 228
           +A+  Q     SS      GSG F  G GGG      GG    G G +     G+     
Sbjct: 154 QAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQ 213

Query: 229 -------------GGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYG 275
                        GGS GGGG GGSG     F + G  GGG  G  GGS G GS      
Sbjct: 214 VTQTSCAPQPSYGGGSSGGGGSGGSG----CFSSGG--GGGSSGCGGGSSGIGS------ 261

Query: 276 NQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGS 311
             G    G GS      GGG   GGG GS+ GG GS
Sbjct: 262 --GCIISGGGSV----CGGGSSGGGGGGSSVGGSGS 291



 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 45/117 (38%), Positives = 48/117 (41%), Gaps = 24/117 (20%)

Query: 190 SSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-------------------GNFSGRGGFGG 230
           SS   G S  G  GGG G G G +   G G                   G  SG GG GG
Sbjct: 178 SSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGG 237

Query: 231 SR-----GGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYG 282
           S      GGGG  G G G +G G+     GGG    GGS G G GG   G  GSG G
Sbjct: 238 SGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVGGSGSGKG 294



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 31/71 (43%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 184 QEMASASSSQRGRS-GSGNFGGGRGGGF----GGNDNFGRGGNFSGRGGF-GGSRGGGGY 237
           Q      SS  G S GSG F  G GGG     GG+   G G   SG G   GG   GGG 
Sbjct: 222 QPSYGGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGG 281

Query: 238 GGSGDGYNGFG 248
           GGS  G +G G
Sbjct: 282 GGSSVGGSGSG 292



 Score = 36.6 bits (83), Expect = 0.037
 Identities = 31/85 (36%), Positives = 32/85 (37%), Gaps = 26/85 (30%)

Query: 288 DSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGP---YGGG 344
           D     GGGG         GGGGS              G   GG  GG SSG    Y GG
Sbjct: 15  DCVKTSGGGG---------GGGGS---------GGGGCGFFGGGGSGGGSSGSGCGYSGG 56

Query: 345 GQYFAKPRNQGGYGGSSSSSSYGSG 369
           G Y     + GG GG SS    G G
Sbjct: 57  GGY-----SGGGCGGGSSGGGGGGG 76


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score =  105 bits (262), Expect = 7e-23
 Identities = 85/247 (34%), Positives = 125/247 (50%), Gaps = 37/247 (14%)

Query: 14  RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
           + L +  LS+  T+E+L+  FE+    T   V ++ N K S+G+ F+ +A+ E+   A+N
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGK-SKGYAFIEFASFEDAKEALN 541

Query: 74  A-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK-IFVGGIKEDTEEHHLRDYFEQYGKI 131
           +    +++GR +  +    R     P A     K +FV G+ EDT E  L++ F+  G +
Sbjct: 542 SCNKREIEGRAIRLELQGPRGS---PNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV 596

Query: 132 EVIEIMTDRGSGKKRGFAFVTFD-DHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS 190
               I+TDR +G  +GF FV F+ + D+       +   ++G+   +  A  K       
Sbjct: 597 RA-RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK------- 648

Query: 191 SSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGND 250
               G  G G  GGGR GGFG     GRGG   GRGGFGG RG GG+GG G      G  
Sbjct: 649 ----GEGGFGGRGGGR-GGFG-----GRGGGRGGRGGFGG-RGRGGFGGRG------GFR 691

Query: 251 GGYGGGG 257
           GG GGGG
Sbjct: 692 GGRGGGG 698



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 76/340 (22%), Positives = 128/340 (37%), Gaps = 43/340 (12%)

Query: 3   KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
           K +  K+    R L    L ++ T + L+  FE    +   +V +D    +S+G  ++ +
Sbjct: 382 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR--LVSKDG---KSKGIAYIEF 436

Query: 63  ATVEEVDAAMNARPH-KVDGRVVEPKRAVSREDSQ--RPGAHLT----VKKIFVGGIKED 115
            T  + +     +   ++DGR +       +  +Q  R G + T     K + +  +   
Sbjct: 437 KTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYS 496

Query: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC 175
             E  L++ FE+   I+V +      +GK +G+AF+ F   +   + +    ++ N    
Sbjct: 497 ATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEAL----NSCNKREI 548

Query: 176 EVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGG 235
           E R    + +    S + R +     F  G        +      + S R      R  G
Sbjct: 549 EGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTT-EETLKESFDGSVRARIVTDRETG 607

Query: 236 GYGGSGDGYNGFGN------------DGGYGGGG-------PGYSGGSRGYGSGGQGYGN 276
                G G+  F +            DG   G         P   GG  G G G  G+G 
Sbjct: 608 S--SKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGG 665

Query: 277 QGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFG 316
           +G G GG G +     GG GG GG  G   GGGG +   G
Sbjct: 666 RGGGRGGRGGFGGRGRGGFGGRGGFRGGR-GGGGDHKPQG 704


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,597,477
Number of Sequences: 37866
Number of extensions: 1147925
Number of successful extensions: 38248
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 324
Number of HSP's that attempted gapping in prelim test: 6517
Number of HSP's gapped (non-prelim): 10421
length of query: 372
length of database: 18,247,518
effective HSP length: 104
effective length of query: 268
effective length of database: 14,309,454
effective search space: 3834933672
effective search space used: 3834933672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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