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Search of human proteins with 14043070
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform
b [Homo sapiens]
(372 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 784 0.0
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 562 e-160
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 562 e-160
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 561 e-160
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 550 e-157
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 503 e-143
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 473 e-133
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 473 e-133
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 471 e-133
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 471 e-133
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 301 8e-82
gi|239747524 PREDICTED: similar to serum response factor-related... 254 1e-67
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 201 9e-52
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 199 3e-51
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 198 7e-51
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 196 3e-50
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 177 1e-44
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 175 5e-44
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 172 4e-43
gi|20373175 musashi 2 isoform a [Homo sapiens] 166 3e-41
gi|4505255 musashi 1 [Homo sapiens] 160 2e-39
gi|25121993 musashi 2 isoform b [Homo sapiens] 155 7e-38
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 147 2e-35
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 147 2e-35
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 145 6e-35
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 145 6e-35
gi|55956899 keratin 9 [Homo sapiens] 129 3e-30
gi|6678271 TAR DNA binding protein [Homo sapiens] 124 1e-28
gi|109255251 loricrin [Homo sapiens] 115 5e-26
gi|55956788 nucleolin [Homo sapiens] 105 7e-23
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 784 bits (2025), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG
Sbjct: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS
Sbjct: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
Query: 361 SSSSSYGSGRRF 372
SSSSSYGSGRRF
Sbjct: 361 SSSSSYGSGRRF 372
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 562 bits (1449), Expect = e-160
Identities = 291/372 (78%), Positives = 294/372 (79%), Gaps = 52/372 (13%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
TYATVEEVDAAMN PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
L KQEMASASSSQRGR GSGNFGGGR G F G FG RGG
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGR------------GDGFGGNDNFG--RGGN----- 221
Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
F GG+GG GG GYG G GY G G+
Sbjct: 222 ------FSGRGGFGGS------------CGGGGYGGSGDGYNGFGN-------------- 249
Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
GSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKP+NQGGYG S
Sbjct: 250 -DGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVS 308
Query: 361 SSSSSYGSGRRF 372
SSSSSYGSGRRF
Sbjct: 309 SSSSSYGSGRRF 320
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 562 bits (1449), Expect = e-160
Identities = 291/372 (78%), Positives = 294/372 (79%), Gaps = 52/372 (13%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
TYATVEEVDAAMN PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
L KQEMASASSSQRGR GSGNFGGGR G F G FG RGG
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGR------------GDGFGGNDNFG--RGGN----- 221
Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
F GG+GG GG GYG G GY G G+
Sbjct: 222 ------FSGRGGFGGS------------CGGGGYGGSGDGYNGFGN-------------- 249
Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
GSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKP+NQGGYG S
Sbjct: 250 -DGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVS 308
Query: 361 SSSSSYGSGRRF 372
SSSSSYGSGRRF
Sbjct: 309 SSSSSYGSGRRF 320
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 561 bits (1447), Expect = e-160
Identities = 293/372 (78%), Positives = 298/372 (80%), Gaps = 52/372 (13%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
GDGYNGFGNDG GGG Y+ +G+ Y NQ S +G GG FGG
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYN----DFGN----YNNQSSNFGPM---------KGGNFGG 283
Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
S +GGGG Y F NQ GG YGGS
Sbjct: 284 RSSGPYGGGGQY--FAKPRNQ--------GG-------------------------YGGS 308
Query: 361 SSSSSYGSGRRF 372
SSSSSYGSGRRF
Sbjct: 309 SSSSSYGSGRRF 320
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 550 bits (1418), Expect = e-157
Identities = 283/376 (75%), Positives = 302/376 (80%), Gaps = 27/376 (7%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
Query: 183 KQEMASASSSQRGR-SGSGNFGGGRGGGF-GGNDNFGRGGNFSGRGGFGGSRGG--GGYG 238
KQEM SA SQRGR GSGNF GRGG F GG NFGRGGNF GRGG+GG GG G YG
Sbjct: 204 KQEMQSA-GSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
Query: 239 GSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGF 298
G GYNGFG DGG GGGPGYS GYG GG GYGNQG GYGG G YD YN GG F
Sbjct: 262 GGDGGYNGFGGDGGNYGGGPGYSSRG-GYGGGGPGYGNQGGGYGGGGGYDGYNE--GGNF 318
Query: 299 GGGSGSNFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSSG-PYGGGGQYFAKPRNQGG 356
GGG N+GGGG+YNDFGNY+ Q SN+GPMKGG+FGGRSSG PYG GG
Sbjct: 319 GGG---NYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYG------------GG 363
Query: 357 YGGSSSSSSYGSGRRF 372
YG S YGS RRF
Sbjct: 364 YGSGGGSGGYGS-RRF 378
Score = 63.5 bits (153), Expect = 3e-10
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 503 bits (1296), Expect = e-143
Identities = 264/372 (70%), Positives = 279/372 (75%), Gaps = 57/372 (15%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKSESPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Y TVEEVDAAMNARPHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH
Sbjct: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
LSKQ+MASA SSQR RSGSGNFGGGR GG FSG F G+GG+
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGR------------GGGFSGNDNF-------GHGGN 221
Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
F GG GG +G GY G G+
Sbjct: 222 ------FSGCGGLGGS-----------------HGGSADGYNGFGN-------------- 244
Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
G NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S YGGGGQYFAKP+NQGGYGGS
Sbjct: 245 -DGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGS 303
Query: 361 SSSSSYGSGRRF 372
SSSSSYGSGRRF
Sbjct: 304 SSSSSYGSGRRF 315
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 473 bits (1217), Expect = e-133
Identities = 257/372 (69%), Positives = 272/372 (73%), Gaps = 57/372 (15%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKSESPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Y TVEEVDAAMNARPHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH
Sbjct: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
LSKQ+MASA SSQR RSGSGNFGGGRGGGF GNDNFG GGNFSG GGFGGS +GGS
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235
Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
DGYNGFGNDG GGG Y+ +G+ NQ S +G GG FGG
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYN----DFGN----CNNQSSNFGPM-------KGG--NFGG 278
Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
+GGGG Y F NQ G YG GS
Sbjct: 279 KRSCLYGGGGQY--FAKPQNQ-----------------GGYG----------------GS 303
Query: 361 SSSSSYGSGRRF 372
SSSSSYGSGRRF
Sbjct: 304 SSSSSYGSGRRF 315
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 473 bits (1217), Expect = e-133
Identities = 257/372 (69%), Positives = 272/372 (73%), Gaps = 57/372 (15%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKSESPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Y TVEEVDAAMNARPHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH
Sbjct: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
LSKQ+MASA SSQR RSGSGNFGGGRGGGF GNDNFG GGNFSG GGFGGS +GGS
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235
Query: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
DGYNGFGNDG GGG Y+ +G+ NQ S +G GG FGG
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYN----DFGN----CNNQSSNFGPM-------KGG--NFGG 278
Query: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
+GGGG Y F NQ G YG GS
Sbjct: 279 KRSCLYGGGGQY--FAKPQNQ-----------------GGYG----------------GS 303
Query: 361 SSSSSYGSGRRF 372
SSSSSYGSGRRF
Sbjct: 304 SSSSSYGSGRRF 315
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 471 bits (1211), Expect = e-133
Identities = 237/358 (66%), Positives = 266/358 (74%), Gaps = 25/358 (6%)
Query: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
Query: 188 SASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGF 247
SS+ GR G+ FG RGG GGN G G NF GGS G G G GDGYNG+
Sbjct: 195 EVQSSRSGRGGNFGFGDSRGG--GGNFGPGPGSNFR-----GGSDGYGSGRGFGDGYNGY 247
Query: 248 GN--DGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSN 305
G GG GG PGY GG GYG GG GYGNQG GYGG Y+N GGG +
Sbjct: 248 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG-----GYDNYGGGNY------- 295
Query: 306 FGGGGSYNDFGNYNNQSSNFGPMKGGNFGG--RSSGPYGGGGQYFAKPRNQGGYGGSS 361
G G+YNDFGNYN Q SN+GPMK GNFGG GPYGGG GGYGG S
Sbjct: 296 --GSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 351
Score = 66.2 bits (160), Expect = 4e-11
Identities = 30/94 (31%), Positives = 56/94 (59%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
+S P ++KLF+GG+ +T + LR +FE++G + ++ D + + RGFGFVT+
Sbjct: 101 ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
+ VD + + H ++G E ++A+SR++ Q
Sbjct: 161 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 471 bits (1211), Expect = e-133
Identities = 237/358 (66%), Positives = 266/358 (74%), Gaps = 25/358 (6%)
Query: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
Query: 188 SASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGF 247
SS+ GR G+ FG RGG GGN G G NF GGS G G G GDGYNG+
Sbjct: 183 EVQSSRSGRGGNFGFGDSRGG--GGNFGPGPGSNFR-----GGSDGYGSGRGFGDGYNGY 235
Query: 248 GN--DGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSN 305
G GG GG PGY GG GYG GG GYGNQG GYGG Y+N GGG +
Sbjct: 236 GGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG-----GYDNYGGGNY------- 283
Query: 306 FGGGGSYNDFGNYNNQSSNFGPMKGGNFGG--RSSGPYGGGGQYFAKPRNQGGYGGSS 361
G G+YNDFGNYN Q SN+GPMK GNFGG GPYGGG GGYGG S
Sbjct: 284 --GSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 339
Score = 66.2 bits (160), Expect = 4e-11
Identities = 30/94 (31%), Positives = 56/94 (59%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
+S P ++KLF+GG+ +T + LR +FE++G + ++ D + + RGFGFVT+
Sbjct: 89 ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
+ VD + + H ++G E ++A+SR++ Q
Sbjct: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 301 bits (770), Expect = 8e-82
Identities = 177/357 (49%), Positives = 211/357 (59%), Gaps = 58/357 (16%)
Query: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
E QL KLFIGGL+ +T++ LR HFE +GTLTDCVV+ +P TKRSR FGFVTY+ VEE
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
DAAM A PH VDG VE KRAVSREDS RPGAH VKK+FVGG+K D E L ++F Q+
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
G +E EI+ D+ SGKKRGF FV F +HD+ DK + K+H + GH EV+KA+ K+++ S
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
Query: 189 ASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFG 248
G GS + GGRGG GRGG GR G S+GGGG GYN +G
Sbjct: 182 GG----GGGGSRSSRGGRGGR-------GRGG---GRDQNGLSKGGGG------GYNSYG 221
Query: 249 NDGGYGGGG-PGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGG---GGFGGGSGS 304
GG GGGG Y GG G GG YGN G+GG GSY + + G G GGG G
Sbjct: 222 GYGGGGGGGYNAYGGGGGGSSYGGSDYGN---GFGGFGSYSQHQSSYGPMKSGGGGGGGG 278
Query: 305 NFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSS 361
+ GG SN GP +GG YGGG GGYGGSS
Sbjct: 279 SSWGG------------RSNSGPYRGG---------YGGG----------GGYGGSS 304
Score = 92.8 bits (229), Expect = 4e-19
Identities = 77/273 (28%), Positives = 111/273 (40%), Gaps = 68/273 (24%)
Query: 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
S P +++KLF+GGL + + L HF Q+GT+ ++ D + + RGFGFV +
Sbjct: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
Query: 64 TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
+ D A + H + G VE K+AV +ED G GG + R
Sbjct: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGG--------GGSRSSRGGRGGR- 198
Query: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
RG G+ D + + K Y++ G+
Sbjct: 199 ---------------GRGGGR----------DQNGLSKGGGGGYNSYGGY---------- 223
Query: 184 QEMASASSSQRGRSGSGNF----GGGRGGGFGGND---NFGRGGNFS-GRGGFGGSRGGG 235
G G G + GGG G +GG+D FG G++S + +G + GG
Sbjct: 224 -----------GGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGG 272
Query: 236 GYGGSGDGYNGFGND----GGYGGGGPGYSGGS 264
G GG G + G N GGYGGGG GY G S
Sbjct: 273 GGGGGGSSWGGRSNSGPYRGGYGGGG-GYGGSS 304
Score = 87.8 bits (216), Expect = 1e-17
Identities = 75/275 (27%), Positives = 116/275 (42%), Gaps = 29/275 (10%)
Query: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
K+F+GG+ T E LR +FE +G + ++ + + + R F FVT+ + + D +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 166 KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGND---NFGRGGNF 222
H V+G+ E+++A+S+++ A + + + F GG G D +F + G
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKK---LFVGGLKGDVAEGDLIEHFSQFGTV 124
Query: 223 SGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYG---SGGQGYGNQGS 279
+ G G G+ F N +G+ + S
Sbjct: 125 EKAEIIADKQSGKK---RGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
Query: 280 GYGGSGSYDSYNNGGGGGFGGG---SGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGR 336
G GG GS S GG G GGG +G + GGGG YN +G Y GG GG
Sbjct: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYG----------GGGGGGY 231
Query: 337 SSGPYGGGGQYFAKPRNQGGYGGSSS----SSSYG 367
++ GGGG + G+GG S SSYG
Sbjct: 232 NAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYG 266
>gi|239747524 PREDICTED: similar to serum response factor-related
protein C4 [Homo sapiens]
Length = 434
Score = 254 bits (648), Expect = 1e-67
Identities = 114/128 (89%), Positives = 118/128 (92%)
Query: 239 GSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGF 298
G GDGYNGFGNDGGYGGGGPGYSGGSRGYGS GQGYG+QGSGYGGSGSY+SYNNGGGG F
Sbjct: 46 GRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSF 105
Query: 299 GGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYG 358
GGGSGS+FGG GSYNDFGNYNNQSSNFGP KGGNFGGRSS P GGGGQYF KP+NQGGYG
Sbjct: 106 GGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYG 165
Query: 359 GSSSSSSY 366
GSSSS Y
Sbjct: 166 GSSSSRHY 173
Score = 52.0 bits (123), Expect = 9e-07
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 188 SASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGF 247
S S + G G+FGGG G FGG+ ++ GN++ + G GG +GG G
Sbjct: 91 SGSYNSYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGG 150
Query: 248 G--------NDGGYGGGGPGYSGGSRGY 267
G N GGYGG S SR Y
Sbjct: 151 GGQYFVKPQNQGGYGG-----SSSSRHY 173
Score = 46.2 bits (108), Expect = 5e-05
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 293 GGGGGFGG-GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKP 351
G G G+ G G+ +GGGG Y+ S +G + G +G + SG YGG G Y +
Sbjct: 46 GRGDGYNGFGNDGGYGGGGP-----GYSGGSRGYGSV-GQGYGSQGSG-YGGSGSYNSYN 98
Query: 352 RNQGG-YGGSSSSSSYGSG 369
GG +GG S SS GSG
Sbjct: 99 NGGGGSFGGGSGSSFGGSG 117
Score = 35.8 bits (81), Expect = 0.064
Identities = 15/19 (78%), Positives = 18/19 (94%)
Query: 1 MSKSESPKEPEQLRKLFIG 19
+S SESPKEP+QLRKLF+G
Sbjct: 28 LSNSESPKEPKQLRKLFLG 46
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 307 GGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQG-GYGGSSS--S 363
G G YN FGN G + G S G YG GQ + +QG GYGGS S S
Sbjct: 46 GRGDGYNGFGNDGGYGGG-----GPGYSGGSRG-YGSVGQGYG---SQGSGYGGSGSYNS 96
Query: 364 SSYGSGRRF 372
+ G G F
Sbjct: 97 YNNGGGGSF 105
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 201 bits (511), Expect = 9e-52
Identities = 113/282 (40%), Positives = 166/282 (58%), Gaps = 19/282 (6%)
Query: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
+K ++ K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
Query: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
+ E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
Query: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-GNF--SGRGGFG-GSRGGGGY 237
SK++ Q+ S G G RG G G + N+ +G N+ G G +G S+G GGY
Sbjct: 240 SKEQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGY 296
Query: 238 GGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGS 279
GG Y G+ N GYG YS GYG + G+Q S
Sbjct: 297 GGY--DYTGYNNYYGYG----DYSNQQSGYGKVSRRGGHQNS 332
Score = 40.4 bits (93), Expect = 0.003
Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 293 GGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 352
G GGF G + GGG S N +N SN+ GN+G S G G GG +
Sbjct: 251 GSRGGFAGRARGR-GGGPSQN----WNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYN 305
Query: 353 NQGGYGG-SSSSSSYGSGRR 371
N GYG S+ S YG R
Sbjct: 306 NYYGYGDYSNQQSGYGKVSR 325
Score = 30.4 bits (67), Expect = 2.7
Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 247 FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNF 306
FG DG GGS G G QG+ G G G GGG+ S
Sbjct: 6 FGGDGA-AAAATAAVGGSAGEQEGAMVAATQGAAAAA---------GSGAGTGGGTASGG 55
Query: 307 GGGGSYNDFGNYNNQSSN 324
GGS G + S N
Sbjct: 56 TEGGSAESEGAKIDASKN 73
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 199 bits (506), Expect = 3e-51
Identities = 106/279 (37%), Positives = 161/279 (57%), Gaps = 21/279 (7%)
Query: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
Query: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
V+ ++ + H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ--E 185
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV+G CE++ A K+ +
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
Query: 186 MASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGG--SRGGGGYGGSGDG 243
S RG GN G G GGG GG S G+G ++G G G G G
Sbjct: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQ-------SWNQGYGNYWNQGYGYQQGYGPG 289
Query: 244 YNGFG-NDGGYGGGGPG--YSGGSRGYGSGGQGYGNQGS 279
Y G+ + GY G GPG YS GS YG + G+Q +
Sbjct: 290 YGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNN 328
Score = 57.4 bits (137), Expect = 2e-08
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
K + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
E V + + H V G E K A +E Q+
Sbjct: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
Score = 53.5 bits (127), Expect = 3e-07
Identities = 35/98 (35%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 274 YGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNF 333
Y Q G GG G+ + N G GGG GGG S G +GNY NQ + G +
Sbjct: 235 YQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQG----YGNYWNQGYGYQQGYGPGY 290
Query: 334 GGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRR 371
GG PYG G GY S S++YG +R
Sbjct: 291 GGYDYSPYGYYGY-------GPGYDYSQGSTNYGKSQR 321
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 198 bits (503), Expect = 7e-51
Identities = 112/280 (40%), Positives = 164/280 (58%), Gaps = 19/280 (6%)
Query: 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
SE+ + K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV +
Sbjct: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
Query: 64 TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
Query: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+SK
Sbjct: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 184 QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-GNF--SGRGGFG-GSRGGGGYGG 239
++ Q+ S G G RG G G + N+ +G N+ G G +G S+G GGYGG
Sbjct: 261 EQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGG 317
Query: 240 SGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGS 279
Y G+ N GYG YS GYG + G+Q S
Sbjct: 318 Y--DYTGYNNYYGYG----DYSNQQSGYGKVSRRGGHQNS 351
Score = 59.3 bits (142), Expect = 5e-09
Identities = 31/95 (32%), Positives = 53/95 (55%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
++++ K E ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T+
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
E V M + H V E K A+S+E Q+
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
Score = 40.4 bits (93), Expect = 0.003
Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 293 GGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 352
G GGF G + GGG S N +N SN+ GN+G S G G GG +
Sbjct: 270 GSRGGFAGRARGR-GGGPSQN----WNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYN 324
Query: 353 NQGGYGG-SSSSSSYGSGRR 371
N GYG S+ S YG R
Sbjct: 325 NYYGYGDYSNQQSGYGKVSR 344
Score = 30.4 bits (67), Expect = 2.7
Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 247 FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNF 306
FG DG GGS G G QG+ G G G GGG+ S
Sbjct: 6 FGGDGA-AAAATAAVGGSAGEQEGAMVAATQGAAAAA---------GSGAGTGGGTASGG 55
Query: 307 GGGGSYNDFGNYNNQSSN 324
GGS G + S N
Sbjct: 56 TEGGSAESEGAKIDASKN 73
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 196 bits (498), Expect = 3e-50
Identities = 106/290 (36%), Positives = 161/290 (55%), Gaps = 18/290 (6%)
Query: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
SK + K + K+FIGGLS++T+ + L + ++G + DC + DP T RSRGFGFV
Sbjct: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
Query: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
+ VD + + HK+DG++++PKRA + + + P KK+FVGG+ DT E +
Sbjct: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249
Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
++YF +G+IE IE+ D + ++RGF F+T+ D + V K++ +YH + CE++ A
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309
Query: 182 SKQEMASASSSQRGRSG--SGNFGGGRGGGFGGNDNFGRG-GNFSGRG------GFGGSR 232
K+ Q+G G +G GG RG G G N+ +G N+ +G +GG +
Sbjct: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369
Query: 233 GGGGYGG-SGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGY 281
GYGG GYN +GN GYG G YSG YG +G GN + Y
Sbjct: 370 NYSGYGGYDYTGYN-YGN-YGYGQGYADYSGQQSTYGKASRGGGNHQNNY 417
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 177 bits (450), Expect = 1e-44
Identities = 87/223 (39%), Positives = 137/223 (61%), Gaps = 17/223 (7%)
Query: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
Query: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
V+ ++ + H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK---- 183
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV+G CE++ A K
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
Query: 184 -QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFG----RGGN 221
Q+ S R R G+ GGG GGG G+ N+G RGG+
Sbjct: 237 QQQYGSGGRGNRNRGNRGS-GGGGGGGGQGSTNYGKSQRRGGH 278
Score = 57.4 bits (137), Expect = 2e-08
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
K + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
E V + + H V G E K A +E Q+
Sbjct: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
Score = 36.2 bits (82), Expect = 0.049
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 274 YGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNN 320
Y Q G GG G+ + N G GGG GGG + G S G+ NN
Sbjct: 235 YQQQQYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNN 281
Score = 34.7 bits (78), Expect = 0.14
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 267 YGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGS-GSNFGGGGSYNDFGNY 318
YGSGG+G N+G+ G G GGGGG G + G + GG N++ Y
Sbjct: 240 YGSGGRGNRNRGNRGSGGG-------GGGGGQGSTNYGKSQRRGGHQNNYKPY 285
Score = 32.0 bits (71), Expect = 0.92
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 253 YGGGGPGYSG-GSRGYGSGGQGYGNQGSGYGGSGSYDSYNN 292
YG GG G G+RG G GG G G + YG S + N
Sbjct: 240 YGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQN 280
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 175 bits (444), Expect = 5e-44
Identities = 93/230 (40%), Positives = 139/230 (60%), Gaps = 12/230 (5%)
Query: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
+K ++ K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
Query: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
+ E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
Query: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGS 231
SK++ Q+ + GS GR G GG+ G G S RGG S
Sbjct: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 283
Score = 30.4 bits (67), Expect = 2.7
Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 247 FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNF 306
FG DG GGS G G QG+ G G G GGG+ S
Sbjct: 6 FGGDGA-AAAATAAVGGSAGEQEGAMVAATQGAAAAA---------GSGAGTGGGTASGG 55
Query: 307 GGGGSYNDFGNYNNQSSN 324
GGS G + S N
Sbjct: 56 TEGGSAESEGAKIDASKN 73
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 172 bits (436), Expect = 4e-43
Identities = 92/228 (40%), Positives = 137/228 (60%), Gaps = 12/228 (5%)
Query: 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
SE+ + K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV +
Sbjct: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
Query: 64 TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
Query: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+SK
Sbjct: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 184 QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGS 231
++ Q+ + GS GR G GG+ G G S RGG S
Sbjct: 261 EQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 302
Score = 59.3 bits (142), Expect = 5e-09
Identities = 31/95 (32%), Positives = 53/95 (55%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
++++ K E ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T+
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
E V M + H V E K A+S+E Q+
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
Score = 30.4 bits (67), Expect = 2.7
Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 247 FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNF 306
FG DG GGS G G QG+ G G G GGG+ S
Sbjct: 6 FGGDGA-AAAATAAVGGSAGEQEGAMVAATQGAAAAA---------GSGAGTGGGTASGG 55
Query: 307 GGGGSYNDFGNYNNQSSN 324
GGS G + S N
Sbjct: 56 TEGGSAESEGAKIDASKN 73
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 166 bits (420), Expect = 3e-41
Identities = 115/344 (33%), Positives = 167/344 (48%), Gaps = 43/344 (12%)
Query: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
S ++S +P K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT
Sbjct: 12 SANDSQHDPG---KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68
Query: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
+A VD + H++D + ++PK A R +P KKIFVGG+ +T +
Sbjct: 69 FADPASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDV 126
Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
+ YFEQ+GK+E +M D+ + + RGF FVTF++ D V+K+ +H +N E +KA
Sbjct: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186
Query: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSG 241
K+ M G G RG + D F G G F + G
Sbjct: 187 PKEVMFP----------PGTRGRARGLPY-TMDAFMLGMGMLGYPNFVAT--------YG 227
Query: 242 DGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGG 301
GY GF YG PG+ + G + +GSG N GGF G
Sbjct: 228 RGYPGFA--PSYGYQFPGFPAAAYGPVAAAAVAAARGSG---------SNPARPGGFPGA 276
Query: 302 SGSN-----FGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGP 340
+ +G + GNY + +S P G FG +GP
Sbjct: 277 NSPGPVADLYGPASQDSGVGNYISAAS---PQPGSGFGHGIAGP 317
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 160 bits (405), Expect = 2e-39
Identities = 94/240 (39%), Positives = 131/240 (54%), Gaps = 13/240 (5%)
Query: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
SP P K+FIGGLS++TT E LR +F Q+G + +C+VMRDP TKRSRGFGFVT+
Sbjct: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71
Query: 66 EEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
VD + H++D + ++PK A R +P KKIFVGG+ +T ++ YF
Sbjct: 72 AGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYF 129
Query: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
EQ+GK++ +M D+ + + RGF FVTF+ D V+K+ +H +N E +KA K E
Sbjct: 130 EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK-E 188
Query: 186 MASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSR-GGGGYGGSGDGY 244
+ S + S RGRS + G D F G G GF + Y G GY
Sbjct: 189 VMSPTGSARGRSRVMPY---------GMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 239
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 155 bits (391), Expect = 7e-38
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 2/182 (1%)
Query: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT+A VD +
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
H++D + ++PK A R +P KKIFVGG+ +T ++ YFEQ+GK+E
Sbjct: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194
+M D+ + + RGF FVTF++ D V+K+ +H +N E +KA K+ M + R
Sbjct: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
Query: 195 GR 196
R
Sbjct: 196 AR 197
Score = 73.6 bits (179), Expect = 3e-13
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
PK + +K+F+GGLS T E ++ +FEQ+G + D ++M D T R RGFGFVT+ +
Sbjct: 99 PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
Query: 67 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG 99
V+ H+++ ++VE K+A +E PG
Sbjct: 159 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 147 bits (371), Expect = 2e-35
Identities = 121/346 (34%), Positives = 153/346 (44%), Gaps = 71/346 (20%)
Query: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE--------VIEIMTDRGSG 143
R D+ + IFV G+ E + ++F+Q G I+ +I + TD+ +G
Sbjct: 218 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 277
Query: 144 KKRGFAFVTFDDHDS----VDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS 199
K +G A V+FDD S +D +++H G+ +V A + E S GR G
Sbjct: 278 KPKGEATVSFDDPPSAKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGR 334
Query: 200 GNFGG-----GRGGG-----------FGGNDNFGR------------------GGNFSGR 225
G + G GRGG GN NF R GG+F GR
Sbjct: 335 GGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGR 394
Query: 226 --GGFGGSRGGGGYGGSGDGYNGFGNDGGYGG---GGPGYSGGSRGYGSGGQ----GY-G 275
GG G RG GG GG GY G + GGYGG G GYSG G G GG GY G
Sbjct: 395 GYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGG 454
Query: 276 NQGSGYGG--SGSYDSYNNGG----GGGFGGGSGSNFGG--GGSYNDFGNYNNQSSNFGP 327
++G GYGG G Y GG GG+GG G +GG GG D G Y +G
Sbjct: 455 DRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGG 514
Query: 328 MKGGNFGGRSSGPYG---GGGQYFAKPRNQGGYGGSSSSSSYGSGR 370
+GG G RS G YG GGG + R+ GGYGG S YG R
Sbjct: 515 DRGGYGGDRSRGGYGGDRGGGSGYGGDRS-GGYGGDRSGGGYGGDR 559
Score = 124 bits (311), Expect = 1e-28
Identities = 81/178 (45%), Positives = 93/178 (52%), Gaps = 15/178 (8%)
Query: 193 QRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG--SGDGYNGFGND 250
+RG G G GG RGG G G GG+ S GG+ G R GGGYGG SG GY G
Sbjct: 399 ERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGG-DRG 457
Query: 251 GGYGGGGPGYSGGSRGYGSGGQ--GY-GNQGSGYGGS-GSYDSYNNGGGGGFG--GGSGS 304
GGYGG G GG RG G GG GY G++G GYGG G Y G GG G GG
Sbjct: 458 GGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRG 517
Query: 305 NFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG-RSSGPYGG--GGQYFAKPRNQGGYGG 359
+GG S +G S +G + G +GG RS G YGG GG Y ++GGYGG
Sbjct: 518 GYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGG---DRGGYGG 572
Score = 107 bits (267), Expect = 2e-23
Identities = 66/140 (47%), Positives = 74/140 (52%), Gaps = 22/140 (15%)
Query: 196 RSGSGNFGGGRGGGFGGNDNFG----RGGNFSG-RGGFGGSRGGGGYGGSGDGYNGFGND 250
RSG G +GG RGGG+GG+ G RGG + G RGG+GG RGGG YGG GY G +
Sbjct: 447 RSGGG-YGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGG-YGGDRGGYGG--DR 502
Query: 251 GGYGGGGPGYSGGSRGYGS------------GGQGYGNQGSG-YGGSGSYDSYNNGGGGG 297
GGYGG GY G GYG GG GYG SG YGG S Y GGG
Sbjct: 503 GGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGG 562
Query: 298 FGGGSGSNFGGGGSYNDFGN 317
+GG G G G ND+ N
Sbjct: 563 YGGDRGGYGGKMGGRNDYRN 582
Score = 50.4 bits (119), Expect = 2e-06
Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 215 NFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGN--DGGYGGGGPGYSGGSRGYGSGGQ 272
++G+ G G+ G GYG + Y+G+G D YG GYS + Y
Sbjct: 6 SYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSYG 65
Query: 273 GYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYN--DFG---NYNNQS 322
GY NQ S S YNN G SGS G SY+ D+G +Y+ QS
Sbjct: 66 GYENQKQS---SYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQS 117
Score = 44.7 bits (104), Expect = 1e-04
Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 14/152 (9%)
Query: 176 EVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGG- 234
E +K S + + Q+ S GGR + D +G+ ++ + G+ +G
Sbjct: 68 ENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPD-YGQQDSYDQQSGYDQHQGSY 126
Query: 235 ---GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRG-------YGSGGQGYGNQGSGYGGS 284
Y D Y+ N Y YS ++ YG +GYG G G
Sbjct: 127 DEQSNYDQQHDSYSQ--NQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGR 184
Query: 285 GSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFG 316
G YD G G GG F G + D+G
Sbjct: 185 GGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYG 216
Score = 38.5 bits (88), Expect = 0.010
Identities = 36/130 (27%), Positives = 47/130 (36%), Gaps = 17/130 (13%)
Query: 249 NDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSG----SYDSYNNGGGGGFGGGSGS 304
+ G YG G S G QGYG Y G G S N G +G
Sbjct: 3 DSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQ 62
Query: 305 NFGG-----GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSG----PYGGGGQYFAK---PR 352
++GG SY+ YNNQ G+ GGR+ YG Y + +
Sbjct: 63 SYGGYENQKQSSYSQ-QPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQ 121
Query: 353 NQGGYGGSSS 362
+QG Y S+
Sbjct: 122 HQGSYDEQSN 131
Score = 38.5 bits (88), Expect = 0.010
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 275 GNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFG--------GGGSYNDFGNY-NNQSSNF 325
G+ G G SY +Y N G G+G S S G G +Y+ + +Y + S ++
Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSY 64
Query: 326 GPMKGGNFGGRSSGPYGGGGQY--FAKPRNQGGYGGSSSSSSYG 367
G + S PY GQ +QGG S YG
Sbjct: 65 GGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYG 108
Score = 38.5 bits (88), Expect = 0.010
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 212 GNDNFGRGGNF---SGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYG 268
G DN G GG+ GRGG+ G G SG GF N GG+ GP S
Sbjct: 168 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGPRTDADSESDN 227
Query: 269 SGGQGYGNQGSGYGGS 284
S QG G G S
Sbjct: 228 SDNNTIFVQGLGEGVS 243
Score = 32.3 bits (72), Expect = 0.70
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 231 SRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSY 290
+RG GG G G G G+ DG G G SGG RG G+ + G D+
Sbjct: 171 NRGYGGSQGGGRGRGGYDKDGR--GPMTGSSGGDRGGFKNFGGHRDYGPRTDADSESDNS 228
Query: 291 NN 292
+N
Sbjct: 229 DN 230
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 147 bits (371), Expect = 2e-35
Identities = 121/346 (34%), Positives = 153/346 (44%), Gaps = 71/346 (20%)
Query: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE--------VIEIMTDRGSG 143
R D+ + IFV G+ E + ++F+Q G I+ +I + TD+ +G
Sbjct: 221 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 280
Query: 144 KKRGFAFVTFDDHDS----VDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS 199
K +G A V+FDD S +D +++H G+ +V A + E S GR G
Sbjct: 281 KPKGEATVSFDDPPSAKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGR 337
Query: 200 GNFGG-----GRGGG-----------FGGNDNFGR------------------GGNFSGR 225
G + G GRGG GN NF R GG+F GR
Sbjct: 338 GGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGR 397
Query: 226 --GGFGGSRGGGGYGGSGDGYNGFGNDGGYGG---GGPGYSGGSRGYGSGGQ----GY-G 275
GG G RG GG GG GY G + GGYGG G GYSG G G GG GY G
Sbjct: 398 GYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGG 457
Query: 276 NQGSGYGG--SGSYDSYNNGG----GGGFGGGSGSNFGG--GGSYNDFGNYNNQSSNFGP 327
++G GYGG G Y GG GG+GG G +GG GG D G Y +G
Sbjct: 458 DRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGG 517
Query: 328 MKGGNFGGRSSGPYG---GGGQYFAKPRNQGGYGGSSSSSSYGSGR 370
+GG G RS G YG GGG + R+ GGYGG S YG R
Sbjct: 518 DRGGYGGDRSRGGYGGDRGGGSGYGGDRS-GGYGGDRSGGGYGGDR 562
Score = 124 bits (311), Expect = 1e-28
Identities = 81/178 (45%), Positives = 93/178 (52%), Gaps = 15/178 (8%)
Query: 193 QRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG--SGDGYNGFGND 250
+RG G G GG RGG G G GG+ S GG+ G R GGGYGG SG GY G
Sbjct: 402 ERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGG-DRG 460
Query: 251 GGYGGGGPGYSGGSRGYGSGGQ--GY-GNQGSGYGGS-GSYDSYNNGGGGGFG--GGSGS 304
GGYGG G GG RG G GG GY G++G GYGG G Y G GG G GG
Sbjct: 461 GGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRG 520
Query: 305 NFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG-RSSGPYGG--GGQYFAKPRNQGGYGG 359
+GG S +G S +G + G +GG RS G YGG GG Y ++GGYGG
Sbjct: 521 GYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGG---DRGGYGG 575
Score = 107 bits (267), Expect = 2e-23
Identities = 66/140 (47%), Positives = 74/140 (52%), Gaps = 22/140 (15%)
Query: 196 RSGSGNFGGGRGGGFGGNDNFG----RGGNFSG-RGGFGGSRGGGGYGGSGDGYNGFGND 250
RSG G +GG RGGG+GG+ G RGG + G RGG+GG RGGG YGG GY G +
Sbjct: 450 RSGGG-YGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGG-YGGDRGGYGG--DR 505
Query: 251 GGYGGGGPGYSGGSRGYGS------------GGQGYGNQGSG-YGGSGSYDSYNNGGGGG 297
GGYGG GY G GYG GG GYG SG YGG S Y GGG
Sbjct: 506 GGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGG 565
Query: 298 FGGGSGSNFGGGGSYNDFGN 317
+GG G G G ND+ N
Sbjct: 566 YGGDRGGYGGKMGGRNDYRN 585
Score = 49.7 bits (117), Expect = 4e-06
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 215 NFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGN--DGGYGGGGPGYSGGSRGYGSGGQ 272
++G+ G G+ G GYG + Y+G+G D YG GYS + Q
Sbjct: 6 SYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQ 65
Query: 273 GYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYN--DFG---NYNNQS 322
YG + S S YNN G SGS G SY+ D+G +Y+ QS
Sbjct: 66 SYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQS 120
Score = 44.7 bits (104), Expect = 1e-04
Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 14/152 (9%)
Query: 176 EVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGG- 234
E +K S + + Q+ S GGR + D +G+ ++ + G+ +G
Sbjct: 71 ENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPD-YGQQDSYDQQSGYDQHQGSY 129
Query: 235 ---GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRG-------YGSGGQGYGNQGSGYGGS 284
Y D Y+ N Y YS ++ YG +GYG G G
Sbjct: 130 DEQSNYDQQHDSYSQ--NQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGR 187
Query: 285 GSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFG 316
G YD G G GG F G + D+G
Sbjct: 188 GGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYG 219
Score = 43.5 bits (101), Expect = 3e-04
Identities = 41/137 (29%), Positives = 55/137 (40%), Gaps = 16/137 (11%)
Query: 235 GGYGGSG---DGYNGFGNDG--GYGGGGPGYSGGSRGYG-SGGQGYGNQGSGYGGSGSYD 288
G YG SG Y+ +GN G GYG YSG YG + YG SGY G
Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSG----YGQTTDSSYGQNYSGYSSYGQSQ 60
Query: 289 SYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYF 348
S + GG+ S++ YN+ G N S+ +GG YG Y
Sbjct: 61 SGYSQSYGGYENQKQSSY-SQQPYNNQGQQQNMESS--GSQGGRAPSYDQPDYGQQDSYD 117
Query: 349 AK---PRNQGGYGGSSS 362
+ ++QG Y S+
Sbjct: 118 QQSGYDQHQGSYDEQSN 134
Score = 42.7 bits (99), Expect = 5e-04
Identities = 50/207 (24%), Positives = 68/207 (32%), Gaps = 32/207 (15%)
Query: 190 SSSQRGRSGSGNFGGGRGG--GFGGNDNFGRGGNFSGRGGFGGSRGG--GGYGG------ 239
S S G GS +G G+G + G N+SG +G S+ G YGG
Sbjct: 16 SYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQKQ 75
Query: 240 ---SGDGYNGFG------NDGGYGGGGPGYSG---GSRGYGSGGQGYGNQGSGYGGSGSY 287
S YN G + G GG P Y G + GY Y +Y
Sbjct: 76 SSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNY 135
Query: 288 ----DSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY-- 341
DSY+ + D Y + +G +G GGR G Y
Sbjct: 136 DQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQG---GGRGRGGYDK 192
Query: 342 -GGGGQYFAKPRNQGGYGGSSSSSSYG 367
G G + ++GG+ YG
Sbjct: 193 DGRGPMTGSSGGDRGGFKNFGGHRDYG 219
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/121 (26%), Positives = 40/121 (33%), Gaps = 14/121 (11%)
Query: 249 NDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGG 308
+ G YG G S G QGYG Y G G + ++ G + G S
Sbjct: 3 DSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQ--TTDSSYGQNYSGYSSYGQSQ 60
Query: 309 GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQY--FAKPRNQGGYGGSSSSSSY 366
G +G Y NQ + S PY GQ +QGG S Y
Sbjct: 61 SGYSQSYGGYENQKQS----------SYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDY 110
Query: 367 G 367
G
Sbjct: 111 G 111
Score = 38.5 bits (88), Expect = 0.010
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 212 GNDNFGRGGNF---SGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYG 268
G DN G GG+ GRGG+ G G SG GF N GG+ GP S
Sbjct: 171 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGPRTDADSESDN 230
Query: 269 SGGQGYGNQGSGYGGS 284
S QG G G S
Sbjct: 231 SDNNTIFVQGLGEGVS 246
Score = 32.3 bits (72), Expect = 0.70
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 231 SRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSY 290
+RG GG G G G G+ DG G G SGG RG G+ + G D+
Sbjct: 174 NRGYGGSQGGGRGRGGYDKDGR--GPMTGSSGGDRGGFKNFGGHRDYGPRTDADSESDNS 231
Query: 291 NN 292
+N
Sbjct: 232 DN 233
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 145 bits (366), Expect = 6e-35
Identities = 96/292 (32%), Positives = 143/292 (48%), Gaps = 30/292 (10%)
Query: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
+++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D T +SRGFGFV + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 71 AMNARPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
+ +RPH +DGR ++PK R + RP + KIFVGGI + E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
LR+YF+++G + + ++ D + RGF F+TF+D SVD+ V +H + G EV+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 179 KALSKQEMASA----SSSQRGRSGSGNFGGGRGG--------GFGGNDNFGRGGNFSGRG 226
+A + + A +SQ G N G G G+G + G G
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG--QAIG 244
Query: 227 GFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQ---GYG 275
G+G G G + + GG P G +GYG+ Q GYG
Sbjct: 245 GYGPPPAGRGAPPPPPPFTSY-IVSTPPGGFPPPQGFPQGYGAPPQFSFGYG 295
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 145 bits (366), Expect = 6e-35
Identities = 96/292 (32%), Positives = 143/292 (48%), Gaps = 30/292 (10%)
Query: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
+++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D T +SRGFGFV + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 71 AMNARPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
+ +RPH +DGR ++PK R + RP + KIFVGGI + E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
LR+YF+++G + + ++ D + RGF F+TF+D SVD+ V +H + G EV+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 179 KALSKQEMASA----SSSQRGRSGSGNFGGGRGG--------GFGGNDNFGRGGNFSGRG 226
+A + + A +SQ G N G G G+G + G G
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG--QAIG 244
Query: 227 GFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQ---GYG 275
G+G G G + + GG P G +GYG+ Q GYG
Sbjct: 245 GYGPPPAGRGAPPPPPPFTSY-IVSTPPGGFPPPQGFPQGYGAPPQFSFGYG 295
Score = 30.8 bits (68), Expect = 2.0
Identities = 18/57 (31%), Positives = 23/57 (40%)
Query: 235 GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYN 291
G Y G G +GFG P GG GSGG G G G G + + ++
Sbjct: 347 GQYAGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGFH 403
Score = 29.6 bits (65), Expect = 4.6
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 259 GYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYN-NGGGGGFGGGSGSNFGGGGSY 312
GY G+G G Q YGG S GG GFG G N G Y
Sbjct: 351 GYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGFHPY 405
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 129 bits (325), Expect = 3e-30
Identities = 80/187 (42%), Positives = 97/187 (51%), Gaps = 29/187 (15%)
Query: 183 KQEMASASSSQRGRSGSGNFGG--GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
+++ S+ + + G G G GG GRG G ++G GG+ G GG GSRGG G
Sbjct: 462 QEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYG 521
Query: 241 GDGYNGFGNDGGYGGG-GPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFG 299
G +G G+ GGYGGG G G+SGGS G SGG G GN G G G G G GGG+G
Sbjct: 522 GGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSG-GNYGGGSGSGG-------GSGGGYG 573
Query: 300 GGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 359
GGSGS G GGS+ G FGG S G YGGG + + GGYGG
Sbjct: 574 GGSGSRGGSGGSHGG---------------GSGFGGESGGSYGGGEE---ASGSGGGYGG 615
Query: 360 SSSSSSY 366
S SS+
Sbjct: 616 GSGKSSH 622
Score = 102 bits (255), Expect = 4e-22
Identities = 74/172 (43%), Positives = 82/172 (47%), Gaps = 41/172 (23%)
Query: 211 GGNDNFGRGG----NFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRG 266
GG ++F G GRGG GGS G G GGSG Y G G+ GGYGGG GSRG
Sbjct: 460 GGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGS-----GSRG 514
Query: 267 YGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFG 326
GSGG YG GGSGS GGG GGG G GGG S G ++ S
Sbjct: 515 -GSGGS-YG------GGSGS--------GGGSGGGYGGGSGGGHSGGSGGGHSGGS---- 554
Query: 327 PMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS---------SSSSSYGSG 369
GGN+GG S G GG Y ++GG GGS S SYG G
Sbjct: 555 ---GGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGG 603
Score = 93.6 bits (231), Expect = 3e-19
Identities = 63/155 (40%), Positives = 71/155 (45%), Gaps = 15/155 (9%)
Query: 190 SSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGN 249
SSS RSG G GGG G G ++ R + G GG G GYGG G G
Sbjct: 7 SSSYLSRSGGGG-GGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGG 65
Query: 250 DGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGG-SGSYDSYNNGGGGGFGGGSGSNFGG 308
G +G G SGG S G G+G G+GG SG S + G GGGFGGGSG FGG
Sbjct: 66 GGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGG 125
Query: 309 GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG 343
G S FG G FGG + G GG
Sbjct: 126 G-----------YGSGFGGF--GGFGGGAGGGDGG 147
Score = 84.7 bits (208), Expect = 1e-16
Identities = 53/125 (42%), Positives = 62/125 (49%), Gaps = 20/125 (16%)
Query: 188 SASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGF 247
S SS G G G F G G G + GRGG G FG S G GGSG G++
Sbjct: 33 SRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGG----GSFGYSYG----GGSGGGFSAS 84
Query: 248 GNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFG 307
GG+GGG G+ G S G GY + G G+GG + G GGGFGGG GS FG
Sbjct: 85 SLGGGFGGGSRGFGGAS------GGGYSSSG-GFGG-----GFGGGSGGGFGGGYGSGFG 132
Query: 308 GGGSY 312
G G +
Sbjct: 133 GFGGF 137
Score = 80.9 bits (198), Expect = 2e-15
Identities = 58/158 (36%), Positives = 70/158 (44%), Gaps = 29/158 (18%)
Query: 221 NFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGG-----PGYSGGSR---GYGSGGQ 272
++ R G GG G G G Y+ F + GG GGGG GY GGS G G GG
Sbjct: 9 SYLSRSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGS 68
Query: 273 GYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGN 332
+ G G GG S S G GGG G G++ GG Y+ G + GG
Sbjct: 69 FGYSYGGGSGGGFSASSLGGGFGGGSRGFGGAS---GGGYSSSGGF-----------GGG 114
Query: 333 FGGRSSGPYGGG-GQYFAKPRNQGGYGGSSSSSSYGSG 369
FGG S G +GGG G F GG+GG + G G
Sbjct: 115 FGGGSGGGFGGGYGSGF------GGFGGFGGGAGGGDG 146
Score = 77.0 bits (188), Expect = 2e-14
Identities = 53/118 (44%), Positives = 62/118 (52%), Gaps = 22/118 (18%)
Query: 189 ASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGR---GGFGGSRGGGGYGGSGDGYN 245
+SSS G S G G GG FG + G GG FS GGFGG G G+GG+ G
Sbjct: 48 SSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGG--GSRGFGGASGG-- 103
Query: 246 GFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSG 303
G+ + GG+GGG G SGG G+G G GSG+GG G G GGG GGG G
Sbjct: 104 GYSSSGGFGGGFGGGSGG--GFG------GGYGSGFGGFG-------GFGGGAGGGDG 146
Score = 64.7 bits (156), Expect = 1e-10
Identities = 52/140 (37%), Positives = 56/140 (40%), Gaps = 42/140 (30%)
Query: 233 GGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNN 292
G + SG G G G GG GG Y GSRG GSGG YGG GS
Sbjct: 461 GQEDFESSGAGKIGLGGRGGSGGS---YGRGSRG-GSGGS--------YGGGGS------ 502
Query: 293 GGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 352
GGG+GGGSGS G GGSY G SG GG G +
Sbjct: 503 --GGGYGGGSGSRGGSGGSY----------------------GGGSGSGGGSGGGYGGGS 538
Query: 353 NQGGYGGSSSSSSYGSGRRF 372
G GGS S GSG +
Sbjct: 539 GGGHSGGSGGGHSGGSGGNY 558
Score = 38.9 bits (89), Expect = 0.008
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 286 SYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGG 345
+Y + GG F G GG G+Y S G G GG S G YGGG
Sbjct: 453 TYHNLLEGGQEDFESSGAGKIGLGGRGGSGGSYGRGSR--GGSGGSYGGGGSGGGYGGGS 510
Query: 346 QYFAKPRNQGGYGGSSSSSSYGSG 369
++ + G YGG S S GSG
Sbjct: 511 G--SRGGSGGSYGGGSGSGG-GSG 531
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 124 bits (312), Expect = 1e-28
Identities = 110/359 (30%), Positives = 154/359 (42%), Gaps = 56/359 (15%)
Query: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
L + GL ++TT++ L+ +F +G + V +D T S+GFGFV + E M+ R
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
H +DGR + K S++ P L +K+FVG ED E LR++F QYG +V++
Sbjct: 166 -HMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219
Query: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
+ + R FAFVTF D D + + + + + G + + A K +S R
Sbjct: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269
Query: 196 RSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYG- 254
SG FGG GG F +GGFG SRGGG G GN+ G
Sbjct: 270 LERSGRFGGNPGG-------------FGNQGGFGNSRGGGA---------GLGNNQGSNM 307
Query: 255 GGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYND 314
GGG + S S +G G S N G SG+N G +
Sbjct: 308 GGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQ-----SGPSGNNQNQGNMQRE 362
Query: 315 ----FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSG 369
FG+ NN S G G G S+ G G + GG+G S S S G G
Sbjct: 363 PNQAFGSGNNSYS--GSNSGAAIGWGSASNAGSGSGF------NGGFGSSMDSKSSGWG 413
Score = 47.0 bits (110), Expect = 3e-05
Identities = 58/264 (21%), Positives = 100/264 (37%), Gaps = 33/264 (12%)
Query: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
+ +S EP + RK+F+G + + T++ LR F Q+G + D + K R F FVT
Sbjct: 179 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVT 233
Query: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
+A +++ ++ + G V A + +S R GG +
Sbjct: 234 FAD-DQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNS 292
Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
R G ++GS G F F + ++ + ++ +
Sbjct: 293 RGGGAGLG--------NNQGSNMGGGMNFGAFSINPAM----------MAAAQAALQSSW 334
Query: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGG--GYGG 239
M ++ +Q G SG+ G N FG G N + GS G G+G
Sbjct: 335 GMMGMLASQQNQSGPSGNNQNQGNMQR--EPNQAFGSGNN-----SYSGSNSGAAIGWGS 387
Query: 240 SGDGYNGFGNDGGYGGGGPGYSGG 263
+ + +G G +GG+G S G
Sbjct: 388 ASNAGSGSGFNGGFGSSMDSKSSG 411
Score = 32.3 bits (72), Expect = 0.70
Identities = 35/137 (25%), Positives = 48/137 (35%), Gaps = 46/137 (33%)
Query: 267 YGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGS------GSNFGGGGSYNDF----- 315
+G G+GNQG G G GGG+ GSN GGG ++ F
Sbjct: 276 FGGNPGGFGNQG--------------GFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPA 321
Query: 316 ----------------GNYNNQSSNFGP----MKGGNFGGRSSGPYGGGGQYFAKPRNQG 355
G +Q + GP GN + +G G ++ N G
Sbjct: 322 MMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYS-GSNSG 380
Query: 356 GYGGSSSSSSYGSGRRF 372
G S+S+ GSG F
Sbjct: 381 AAIGWGSASNAGSGSGF 397
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 115 bits (289), Expect = 5e-26
Identities = 77/182 (42%), Positives = 87/182 (47%), Gaps = 11/182 (6%)
Query: 195 GRSGSGNFGGGRGGG--FGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGG 252
G G G FGGG GG G + GG +SG G GGS GGGG GG G G G
Sbjct: 30 GGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGCGGGSGGSVK 89
Query: 253 YGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGS--GSYDSYNNGGGGGFGGGSGSNFGGGG 310
Y GGG GGS + SGG G G SG GGS G +++GGGG GGGSG GGG
Sbjct: 90 YSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGG 149
Query: 311 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY---GGGGQYFAKPRNQGGYGGSSSSSSYG 367
F Q ++G + G G SG + GGGG G GG SS S G
Sbjct: 150 G---FSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGS-G 205
Query: 368 SG 369
SG
Sbjct: 206 SG 207
Score = 100 bits (248), Expect = 3e-21
Identities = 76/199 (38%), Positives = 85/199 (42%), Gaps = 27/199 (13%)
Query: 195 GRSGSGNFGG--GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYG--GSGDGYNGFGND 250
G SG G GG G GGG GG+ + GG SG G S GGGG G SG G + G
Sbjct: 67 GSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGS 126
Query: 251 GGYGGGGPGYSGGSRG-YGSGGQGYGNQ-------------GSGYGGSGSYDSYNNGG-- 294
G + GG G SGG G + SGG G+ Q GS GGSG + S GG
Sbjct: 127 GCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSV 186
Query: 295 ----GGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAK 350
GGG G G GS+ G G Y S P G GG S G GG F+
Sbjct: 187 CGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYG---GGSSGGGGSGGSGCFSS 243
Query: 351 PRNQGGYGGSSSSSSYGSG 369
G G SS GSG
Sbjct: 244 GGGGGSSGCGGGSSGIGSG 262
Score = 94.0 bits (232), Expect = 2e-19
Identities = 74/193 (38%), Positives = 83/193 (43%), Gaps = 37/193 (19%)
Query: 198 GSGNFGGGRG---GGFGGNDNFGRGGNFSGRGGFGG------SRGGGGYGGSGDGYNGFG 248
G G+ GGG G G GG+ G G SG GGF G S GG GGS G +G
Sbjct: 118 GGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCF 177
Query: 249 NDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSG-----------SYDSYNNGGGGG 297
+ GG GG GYSGG G G GG G GSGY S SY ++GGGG
Sbjct: 178 SSGGGGGSVCGYSGG--GSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGS 235
Query: 298 FGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGY 357
G G S+ GGGGS GG G SG GG + GG
Sbjct: 236 GGSGCFSSGGGGGSSG---------------CGGGSSGIGSGCIISGGGSVCGGGSSGGG 280
Query: 358 GGSSSSSSYGSGR 370
GG SS GSG+
Sbjct: 281 GGGSSVGGSGSGK 293
Score = 83.2 bits (204), Expect = 3e-16
Identities = 66/164 (40%), Positives = 72/164 (43%), Gaps = 35/164 (21%)
Query: 231 SRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSY 290
S GGGG GGSG G GF GG GGG SG GY SGG GY G G G SG
Sbjct: 20 SGGGGGGGGSGGGGCGFFGGGGSGGGS---SGSGCGY-SGGGGYSGGGCGGGSSGG---- 71
Query: 291 NNGGGGGFG-------------GGSGSNFGGGGSYNDFGNYNN-QSSNFGPMKGGNFGGR 336
GGGGG G GG GS+ GG G ++ G + SS G GG G
Sbjct: 72 --GGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCF 129
Query: 337 SSGPYG-----------GGGQYFAKPRNQGGYGGSSSSSSYGSG 369
SSG G GGG + + YGG SS S G G
Sbjct: 130 SSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGG 173
Score = 67.4 bits (163), Expect = 2e-11
Identities = 56/156 (35%), Positives = 62/156 (39%), Gaps = 41/156 (26%)
Query: 179 KALSKQEMASASSSQRGRSGSGNFGGGRGGGF-----GGNDNFGRGGNFSGRGGF----- 228
+A+ Q SS GSG F G GGG GG G G + G+
Sbjct: 154 QAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQ 213
Query: 229 -------------GGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYG 275
GGS GGGG GGSG F + G GGG G GGS G GS
Sbjct: 214 VTQTSCAPQPSYGGGSSGGGGSGGSG----CFSSGG--GGGSSGCGGGSSGIGS------ 261
Query: 276 NQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGS 311
G G GS GGG GGG GS+ GG GS
Sbjct: 262 --GCIISGGGSV----CGGGSSGGGGGGSSVGGSGS 291
Score = 63.2 bits (152), Expect = 4e-10
Identities = 45/117 (38%), Positives = 48/117 (41%), Gaps = 24/117 (20%)
Query: 190 SSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-------------------GNFSGRGGFGG 230
SS G S G GGG G G G + G G G SG GG GG
Sbjct: 178 SSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGG 237
Query: 231 SR-----GGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYG 282
S GGGG G G G +G G+ GGG GGS G G GG G GSG G
Sbjct: 238 SGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVGGSGSGKG 294
Score = 42.0 bits (97), Expect = 9e-04
Identities = 31/71 (43%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 184 QEMASASSSQRGRS-GSGNFGGGRGGGF----GGNDNFGRGGNFSGRGGF-GGSRGGGGY 237
Q SS G S GSG F G GGG GG+ G G SG G GG GGG
Sbjct: 222 QPSYGGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGG 281
Query: 238 GGSGDGYNGFG 248
GGS G +G G
Sbjct: 282 GGSSVGGSGSG 292
Score = 36.6 bits (83), Expect = 0.037
Identities = 31/85 (36%), Positives = 32/85 (37%), Gaps = 26/85 (30%)
Query: 288 DSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGP---YGGG 344
D GGGG GGGGS G GG GG SSG Y GG
Sbjct: 15 DCVKTSGGGG---------GGGGS---------GGGGCGFFGGGGSGGGSSGSGCGYSGG 56
Query: 345 GQYFAKPRNQGGYGGSSSSSSYGSG 369
G Y + GG GG SS G G
Sbjct: 57 GGY-----SGGGCGGGSSGGGGGGG 76
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 105 bits (262), Expect = 7e-23
Identities = 85/247 (34%), Positives = 125/247 (50%), Gaps = 37/247 (14%)
Query: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
+ L + LS+ T+E+L+ FE+ T V ++ N K S+G+ F+ +A+ E+ A+N
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGK-SKGYAFIEFASFEDAKEALN 541
Query: 74 A-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK-IFVGGIKEDTEEHHLRDYFEQYGKI 131
+ +++GR + + R P A K +FV G+ EDT E L++ F+ G +
Sbjct: 542 SCNKREIEGRAIRLELQGPRGS---PNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV 596
Query: 132 EVIEIMTDRGSGKKRGFAFVTFD-DHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS 190
I+TDR +G +GF FV F+ + D+ + ++G+ + A K
Sbjct: 597 RA-RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK------- 648
Query: 191 SSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGND 250
G G G GGGR GGFG GRGG GRGGFGG RG GG+GG G G
Sbjct: 649 ----GEGGFGGRGGGR-GGFG-----GRGGGRGGRGGFGG-RGRGGFGGRG------GFR 691
Query: 251 GGYGGGG 257
GG GGGG
Sbjct: 692 GGRGGGG 698
Score = 60.8 bits (146), Expect = 2e-09
Identities = 76/340 (22%), Positives = 128/340 (37%), Gaps = 43/340 (12%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
K + K+ R L L ++ T + L+ FE + +V +D +S+G ++ +
Sbjct: 382 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR--LVSKDG---KSKGIAYIEF 436
Query: 63 ATVEEVDAAMNARPH-KVDGRVVEPKRAVSREDSQ--RPGAHLT----VKKIFVGGIKED 115
T + + + ++DGR + + +Q R G + T K + + +
Sbjct: 437 KTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYS 496
Query: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC 175
E L++ FE+ I+V + +GK +G+AF+ F + + + ++ N
Sbjct: 497 ATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEAL----NSCNKREI 548
Query: 176 EVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGG 235
E R + + S + R + F G + + S R R G
Sbjct: 549 EGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTT-EETLKESFDGSVRARIVTDRETG 607
Query: 236 GYGGSGDGYNGFGN------------DGGYGGGG-------PGYSGGSRGYGSGGQGYGN 276
G G+ F + DG G P GG G G G G+G
Sbjct: 608 S--SKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGG 665
Query: 277 QGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFG 316
+G G GG G + GG GG GG G GGGG + G
Sbjct: 666 RGGGRGGRGGFGGRGRGGFGGRGGFRGGR-GGGGDHKPQG 704
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,597,477
Number of Sequences: 37866
Number of extensions: 1147925
Number of successful extensions: 38248
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 324
Number of HSP's that attempted gapping in prelim test: 6517
Number of HSP's gapped (non-prelim): 10421
length of query: 372
length of database: 18,247,518
effective HSP length: 104
effective length of query: 268
effective length of database: 14,309,454
effective search space: 3834933672
effective search space used: 3834933672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.