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Search of human proteins with 7657667
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657667 ubiquitin-like 4 [Homo sapiens]
(157 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657667 ubiquitin-like 4 [Homo sapiens] 303 4e-83
gi|44662819 ubiquitin-like 4B [Homo sapiens] 126 9e-30
gi|11024714 ubiquitin B precursor [Homo sapiens] 63 1e-10
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 63 1e-10
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 63 1e-10
gi|67191208 ubiquitin C [Homo sapiens] 63 1e-10
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 63 1e-10
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 63 1e-10
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens] 56 1e-08
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens] 56 1e-08
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens] 56 1e-08
gi|5453760 neural precursor cell expressed, developmentally down... 54 4e-08
gi|58761508 midnolin [Homo sapiens] 49 2e-06
gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens] 43 1e-04
gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [H... 42 3e-04
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi... 41 4e-04
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 41 4e-04
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 41 4e-04
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 41 4e-04
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 41 4e-04
gi|4826964 UV excision repair protein RAD23 homolog A [Homo sapi... 39 0.001
gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens] 39 0.002
gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens] 39 0.002
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i... 38 0.003
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i... 38 0.003
gi|16753207 ubiquilin 2 [Homo sapiens] 36 0.012
gi|169790971 parkin isoform 2 [Homo sapiens] 35 0.020
gi|169790969 parkin isoform 1 [Homo sapiens] 35 0.020
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 35 0.026
gi|124494251 BCL2-associated athanogene isoform 1L [Homo sapiens] 35 0.034
>gi|7657667 ubiquitin-like 4 [Homo sapiens]
Length = 157
Score = 303 bits (776), Expect = 4e-83
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
Query: 61 IGPNSKLNLVVKPLEKVLLEEGEAQRLADSPPPQVWQLISKVLARHFSAADASRVLEQLQ 120
IGPNSKLNLVVKPLEKVLLEEGEAQRLADSPPPQVWQLISKVLARHFSAADASRVLEQLQ
Sbjct: 61 IGPNSKLNLVVKPLEKVLLEEGEAQRLADSPPPQVWQLISKVLARHFSAADASRVLEQLQ 120
Query: 121 RDYERSLSRLTLDDIERLASRFLHPEVTETMEKGFSK 157
RDYERSLSRLTLDDIERLASRFLHPEVTETMEKGFSK
Sbjct: 121 RDYERSLSRLTLDDIERLASRFLHPEVTETMEKGFSK 157
>gi|44662819 ubiquitin-like 4B [Homo sapiens]
Length = 174
Score = 126 bits (316), Expect = 9e-30
Identities = 68/147 (46%), Positives = 97/147 (65%), Gaps = 7/147 (4%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
M LTVK L G+ CSL+V E V+TLK+LVS +L VP QQ LLF+G+ L D K LSDY
Sbjct: 1 MFLTVKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDYC 60
Query: 61 IGPNSKLNLVVKPLEKVLLEEGEAQRLADSPPPQ-VWQLISKVLARHFSAADASRVLEQL 119
IGPN+ +N++++PLEK+ L+E A P Q +W + VLA+HF DA VL+ L
Sbjct: 61 IGPNASINVIMQPLEKMALKE------AHQPQTQPLWHQLGLVLAKHFEPQDAKAVLQLL 114
Query: 120 QRDYERSLSRLTLDDIERLASRFLHPE 146
++++E L +++L+ +E+LA L E
Sbjct: 115 RQEHEERLQKISLEHLEQLAQYLLAEE 141
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 61 IQKESTLHLVLR 72
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 137 IQKESTLHLVLR 148
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 213 IQKESTLHLVLR 224
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 61 IQKESTLHLVLR 72
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 61 IQKESTLHLVLR 72
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 61 IQKESTLHLVLR 72
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 137 IQKESTLHLVLR 148
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYN 212
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 213 IQKESTLHLVLR 224
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 289 IQKESTLHLVLR 300
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 365 IQKESTLHLVLR 376
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 441 IQKESTLHLVLR 452
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 517 IQKESTLHLVLR 528
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 593 IQKESTLHLVLR 604
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 669 IQKESTLHLVLR 680
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 61 IQKESTLHLVLR 72
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IGPNSKLNLVVK 72
I S L+LV++
Sbjct: 61 IQKESTLHLVLR 72
>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 55.8 bits (133), Expect = 1e-08
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
+Q+ VK L+G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSD +
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 61 IGPNSKLNLVVK 72
I L+L+++
Sbjct: 129 IQKEPTLHLLLR 140
>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 55.8 bits (133), Expect = 1e-08
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
+Q+ VK L+G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSD +
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 61 IGPNSKLNLVVK 72
I L+L+++
Sbjct: 129 IQKEPTLHLLLR 140
>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 55.8 bits (133), Expect = 1e-08
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
+Q+ VK L+G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSD +
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 61 IGPNSKLNLVVK 72
I L+L+++
Sbjct: 129 IQKEPTLHLLLR 140
>gi|5453760 neural precursor cell expressed, developmentally
down-regulated 8 [Homo sapiens]
Length = 81
Score = 54.3 bits (129), Expect = 4e-08
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
M + VK L G+E + + + V +K+ V EK +P +QQRL++ GK + D K +DY
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 61 IGPNSKLNLVV 71
I S L+LV+
Sbjct: 61 ILGGSVLHLVL 71
>gi|58761508 midnolin [Homo sapiens]
Length = 468
Score = 48.5 bits (114), Expect = 2e-06
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
M L + + G L VP DE V L++ +S++L VP + LL K L+ GK L ++
Sbjct: 31 MSLAIHSTTGTRYDLAVPPDETVEGLRKRLSQRLKVPKERLALLHKDTRLSSGK-LQEFG 89
Query: 61 IGPNSKLNLV 70
+G SKL LV
Sbjct: 90 VGDGSKLTLV 99
>gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
Length = 165
Score = 43.1 bits (100), Expect = 1e-04
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 3 LTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF--KGKALADGKRLSDYS 60
LTVK L G E + + VS LK +++K+ V QQRL G AL D L+
Sbjct: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 64
Query: 61 IGPNSKLNLVVKPLEKVL 78
+GP S + LVV ++ L
Sbjct: 65 LGPGSTVLLVVDKCDEPL 82
>gi|23312364 ubiquitin-like with PHD and ring finger domains 2
[Homo sapiens]
Length = 802
Score = 41.6 bits (96), Expect = 3e-04
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 1 MQLTVKALQG-RECSLQ-VPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSD 58
M + V+ + G + C+++ V + L++ V +V QRL ++GK L +G L D
Sbjct: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60
Query: 59 YSIGPNSKLNLVVKPLEKVL---LEEGEAQRLADSPP 92
Y +G N + L+V+P L + EA+ ++SPP
Sbjct: 61 YDVGLNDIIQLLVRPDPDHLPGTSTQIEAKPCSNSPP 97
>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
sapiens]
Length = 409
Score = 41.2 bits (95), Expect = 4e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLS 57
MQ+T+K LQ + + + +E V LK+ + + PV Q+L++ GK L D L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 58 DYSIG-PNSKLNLVVKP 73
+Y I N + +V KP
Sbjct: 61 EYKIDEKNFVVVMVTKP 77
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 41.2 bits (95), Expect = 4e-04
Identities = 17/62 (27%), Positives = 37/62 (59%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
+++ VK L + + V V K+ ++ +++P +QRL+++G+ L D K+L +Y+
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 61 IG 62
+G
Sbjct: 77 VG 78
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 41.2 bits (95), Expect = 4e-04
Identities = 17/62 (27%), Positives = 37/62 (59%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
+++ VK L + + V V K+ ++ +++P +QRL+++G+ L D K+L +Y+
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 61 IG 62
+G
Sbjct: 77 VG 78
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 41.2 bits (95), Expect = 4e-04
Identities = 17/62 (27%), Positives = 37/62 (59%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
+++ VK L + + V V K+ ++ +++P +QRL+++G+ L D K+L +Y+
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 61 IG 62
+G
Sbjct: 77 VG 78
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo
sapiens]
Length = 1132
Score = 41.2 bits (95), Expect = 4e-04
Identities = 17/62 (27%), Positives = 37/62 (59%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
+++ VK L + + V V K+ ++ +++P +QRL+++G+ L D K+L +Y+
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 61 IG 62
+G
Sbjct: 77 VG 78
>gi|4826964 UV excision repair protein RAD23 homolog A [Homo
sapiens]
Length = 363
Score = 39.3 bits (90), Expect = 0.001
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 3 LTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDY 59
+T+K LQ + +++ DE V LK+ + + PV Q+L++ GK L+D + DY
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 60 SIGPNSKLNLVVKPLEKVLLEEGEAQRLADSP 91
I + N VV + K +G + SP
Sbjct: 65 RI---DEKNFVVVMVTKTKAGQGTSAPPEASP 93
>gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens]
Length = 561
Score = 38.9 bits (89), Expect = 0.002
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
M++TVK + +E VPE+ V K+ +S++ Q L+F GK L D LS +
Sbjct: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
Query: 61 IGPNSKLNLVVK 72
I ++LV+K
Sbjct: 96 IHDGLTVHLVIK 107
>gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens]
Length = 589
Score = 38.9 bits (89), Expect = 0.002
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
M++TVK + +E VPE+ V K+ +S++ Q L+F GK L D LS +
Sbjct: 37 MKVTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 95
Query: 61 IGPNSKLNLVVK 72
I ++LV+K
Sbjct: 96 IHDGLTVHLVIK 107
>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
isoform 1 [Homo sapiens]
Length = 793
Score = 38.1 bits (87), Expect = 0.003
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1 MQLTVKALQGRECSLQVPEDEL--VSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSD 58
M + V+ + GR+ L V L++ + E +V QRL ++GK + DG L D
Sbjct: 1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60
Query: 59 YSIGPNSKLNLVVK 72
Y + N + L+V+
Sbjct: 61 YEVRLNDTIQLLVR 74
>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
isoform 2 [Homo sapiens]
Length = 806
Score = 38.1 bits (87), Expect = 0.003
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1 MQLTVKALQGRECSLQVPEDEL--VSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSD 58
M + V+ + GR+ L V L++ + E +V QRL ++GK + DG L D
Sbjct: 14 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 73
Query: 59 YSIGPNSKLNLVVK 72
Y + N + L+V+
Sbjct: 74 YEVRLNDTIQLLVR 87
>gi|16753207 ubiquilin 2 [Homo sapiens]
Length = 624
Score = 36.2 bits (82), Expect = 0.012
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
+++TVK + +E VPE+ V K+ +S++ Q L+F GK L D L +
Sbjct: 33 IKVTVKTPKEKE-EFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91
Query: 61 IGPNSKLNLVVK 72
I ++LV+K
Sbjct: 92 IHDGLTVHLVIK 103
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 35.4 bits (80), Expect = 0.020
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 15 LQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 74
++V D + LK++V+++ VP Q R++F GK L + + + + S +++V +P
Sbjct: 15 VEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQRPW 74
Query: 75 EK 76
K
Sbjct: 75 RK 76
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 35.4 bits (80), Expect = 0.020
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 15 LQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 74
++V D + LK++V+++ VP Q R++F GK L + + + + S +++V +P
Sbjct: 15 VEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQRPW 74
Query: 75 EK 76
K
Sbjct: 75 RK 76
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 35.0 bits (79), Expect = 0.026
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
+++TVK + +E + + + V K+ +S + Q L+F GK L DG L+ +
Sbjct: 13 IRVTVKTPKDKE-EIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQHG 71
Query: 61 IGPNSKLNLVVKPLEKVLLEEGEAQRLADSP 91
I ++LV+K +K + A A SP
Sbjct: 72 IKDGLTVHLVIKTPQKA---QDPAAATASSP 99
>gi|124494251 BCL2-associated athanogene isoform 1L [Homo sapiens]
Length = 345
Score = 34.7 bits (78), Expect = 0.034
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 14 SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKR-LSDYSIGPNSKLNLVVK 72
S Q + +V L Q+V E + VP Q+L+FKGK+L + + LS I ++ L+ K
Sbjct: 161 SQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 220
Query: 73 ---PLEKVLLE-----EGEAQRLAD 89
P E+V L+ E +++AD
Sbjct: 221 KNSPQEEVELKKLKHLEKSVEKIAD 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,506,304
Number of Sequences: 37866
Number of extensions: 204166
Number of successful extensions: 774
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 67
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.