Guide to the Human Genome
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Name: LOC100128355 Sequence: fasta or formatted (334aa) NCBI GI: 239752254
Description:

PREDICTED: similar to hCG1790904

Referenced in:

Ribosomes

Other entries for this name:
alt prot [334aa] PREDICTED: similar to hCG1790904
alt prot [334aa] PREDICTED: similar to hCG1790904
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         19           3
 C cysteine            3.6         12           1
 D aspartate           4.5         15           1
 E glutamate           4.8         16           1
 F phenylalanine       3.0         10           1
 G glycine             6.6         22           2
 H histidine           2.4          8           2
 I isoleucine          4.8         16           1
 K lysine              9.9         33           2
 L leucine            10.8         36           3
 M methionine          2.4          8           1
 N asparagine          4.5         15           2
 P proline             6.0         20           2
 Q glutamine           3.6         12           2
 R arginine            6.3         21           1
 S serine              7.5         25           3
 T threonine           4.8         16           2
 V valine              6.3         21           1
 W tryptophan          1.2          4           1
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1790904 
LOC100128355          0.995   PREDICTED: similar to hCG1790904 
LOC100128355          0.995   PREDICTED: similar to hCG1790904 
RPS27A                0.256   ubiquitin and ribosomal protein S27a precursor [Hom...
RPS27A                0.256   ubiquitin and ribosomal protein S27a precursor 
UBA52                 0.166   ubiquitin and ribosomal protein L40 precursor 
UBA52                 0.166   ubiquitin and ribosomal protein L40 precursor 
UBB                   0.166   ubiquitin B precursor 
UBC                   0.166   ubiquitin C 
NEDD8                 0.085   neural precursor cell expressed, developmentally down...
ANUBL1                0.047   AN1, ubiquitin-like, homolog 
ANUBL1                0.047   AN1, ubiquitin-like, homolog 
UBL4A                 0.047   ubiquitin-like 4 
FAU                   0.046   ubiquitin-like protein fubi and ribosomal protein S30...
PARK2                 0.038   parkin isoform 2 
PARK2                 0.038   parkin isoform 1 
UHRF1                 0.037   ubiquitin-like with PHD and ring finger domains 1 i...
OASL                  0.035   2'-5'-oligoadenylate synthetase-like isoform a [Homo...
UHRF1                 0.033   ubiquitin-like with PHD and ring finger domains 1 i...
RAD23B                0.033   UV excision repair protein RAD23 homolog B 
UBTD1                 0.032   ubiquitin domain containing 1 
UBQLN3                0.030   ubiquilin 3 
UBD                   0.029   ubiquitin D 
UBTD2                 0.029   dendritic cell-derived ubiquitin-like protein [Homo...
ISG15                 0.027   ISG15 ubiquitin-like modifier 
UHRF2                 0.027   ubiquitin-like with PHD and ring finger domains 2 [H...
UBL4B                 0.027   ubiquitin-like 4B 
BAT3                  0.026   HLA-B associated transcript-3 isoform b 
BAT3                  0.026   HLA-B associated transcript-3 isoform b 
BAT3                  0.026   HLA-B associated transcript-3 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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