Guide to the Human Genome
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Name: UBL4B Sequence: fasta or formatted (174aa) NCBI GI: 44662819
Description:

ubiquitin-like 4B

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         15           3
 C cysteine            1.7          3           1
 D aspartate           3.4          6           2
 E glutamate          12.6         22           2
 F phenylalanine       1.7          3           1
 G glycine             3.4          6           1
 H histidine           4.6          8           1
 I isoleucine          2.3          4           1
 K lysine              6.9         12           1
 L leucine            16.7         29           3
 M methionine          2.3          4           1
 N asparagine          1.1          2           1
 P proline             5.2          9           1
 Q glutamine          10.3         18           2
 R arginine            5.2          9           2
 S serine              5.2          9           2
 T threonine           1.7          3           1
 V valine              5.2          9           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-like 4B 
UBL4A                 0.316   ubiquitin-like 4 
RPS27A                0.078   ubiquitin and ribosomal protein S27a precursor [Hom...
RPS27A                0.078   ubiquitin and ribosomal protein S27a precursor 
UBC                   0.075   ubiquitin C 
UBB                   0.075   ubiquitin B precursor 
UBA52                 0.075   ubiquitin and ribosomal protein L40 precursor 
UBA52                 0.075   ubiquitin and ribosomal protein L40 precursor 
BAT3                  0.059   HLA-B associated transcript-3 isoform b 
BAT3                  0.059   HLA-B associated transcript-3 isoform b 
BAT3                  0.059   HLA-B associated transcript-3 isoform b 
BAT3                  0.059   HLA-B associated transcript-3 isoform a 
LOC100128355          0.056   PREDICTED: similar to hCG1790904 
LOC100128355          0.056   PREDICTED: similar to hCG1790904 
LOC100128355          0.056   PREDICTED: similar to hCG1790904 
NEDD8                 0.053   neural precursor cell expressed, developmentally down...
ZNF853                0.050   zinc finger protein 853 
MIDN                  0.050   midnolin 
ANUBL1                0.047   AN1, ubiquitin-like, homolog 
ANUBL1                0.047   AN1, ubiquitin-like, homolog 
AZI1                  0.037   5-azacytidine induced 1 isoform b 
AZI1                  0.037   5-azacytidine induced 1 isoform a 
ISG15                 0.034   ISG15 ubiquitin-like modifier 
UHRF2                 0.034   ubiquitin-like with PHD and ring finger domains 2 [H...
DEF6                  0.034   differentially expressed in FDCP 6 homolog 
UBQLN4                0.031   ataxin-1 ubiquitin-like interacting protein 
NEK11                 0.031   NIMA-related kinase 11 isoform 2 
NEK11                 0.031   NIMA-related kinase 11 isoform 3 
NEK11                 0.031   NIMA-related kinase 11 isoform 1 
CEP57                 0.028   translokin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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