Guide to the Human Genome
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Name: UBA52 Sequence: fasta or formatted (128aa) NCBI GI: 77539055
Description:

ubiquitin and ribosomal protein L40 precursor

Referenced in:

Ribosomes
Ubiquitin and Related Protein Modifications

Other entries for this name:
alt mRNA [128aa] ubiquitin and ribosomal protein L40 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          5           1
 C cysteine            3.9          5           1
 D aspartate           4.7          6           1
 E glutamate           5.5          7           1
 F phenylalanine       1.6          2           1
 G glycine             5.5          7           2
 H histidine           2.3          3           1
 I isoleucine          7.8         10           2
 K lysine             13.3         17           3
 L leucine            10.2         13           1
 M methionine          1.6          2           1
 N asparagine          4.7          6           2
 P proline             4.7          6           2
 Q glutamine           6.2          8           2
 R arginine            7.8         10           1
 S serine              3.1          4           1
 T threonine           6.2          8           1
 V valine              4.7          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin and ribosomal protein L40 precursor 
UBA52                 1.000   ubiquitin and ribosomal protein L40 precursor 
UBC                   0.536   ubiquitin C 
UBB                   0.532   ubiquitin B precursor 
RPS27A                0.532   ubiquitin and ribosomal protein S27a precursor [Hom...
RPS27A                0.532   ubiquitin and ribosomal protein S27a precursor 
LOC100128355          0.460   PREDICTED: similar to hCG1790904 
LOC100128355          0.460   PREDICTED: similar to hCG1790904 
LOC100128355          0.460   PREDICTED: similar to hCG1790904 
NEDD8                 0.300   neural precursor cell expressed, developmentally down...
ANUBL1                0.203   AN1, ubiquitin-like, homolog 
ANUBL1                0.203   AN1, ubiquitin-like, homolog 
UBL4A                 0.160   ubiquitin-like 4 
ISG15                 0.135   ISG15 ubiquitin-like modifier 
FAU                   0.114   ubiquitin-like protein fubi and ribosomal protein S30...
UBD                   0.114   ubiquitin D 
RAD23B                0.114   UV excision repair protein RAD23 homolog B 
UHRF1                 0.110   ubiquitin-like with PHD and ring finger domains 1 i...
UHRF1                 0.110   ubiquitin-like with PHD and ring finger domains 1 i...
OASL                  0.110   2'-5'-oligoadenylate synthetase-like isoform a [Homo...
PARK2                 0.105   parkin isoform 2 
PARK2                 0.105   parkin isoform 1 
UHRF2                 0.101   ubiquitin-like with PHD and ring finger domains 2 [H...
UBL4B                 0.101   ubiquitin-like 4B 
SF3A1                 0.097   splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom...
SF3A1                 0.097   splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo...
UBTD1                 0.097   ubiquitin domain containing 1 
BAT3                  0.093   HLA-B associated transcript-3 isoform b 
BAT3                  0.093   HLA-B associated transcript-3 isoform b 
BAT3                  0.093   HLA-B associated transcript-3 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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