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Search of human proteins with 7657530
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657530 rhabdoid tumor deletion region protein 1 [Homo
sapiens]
(348 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657530 rhabdoid tumor deletion region protein 1 [Homo sapiens] 671 0.0
gi|189409124 armadillo repeat containing 3 [Homo sapiens] 48 1e-05
gi|31657114 armadillo repeat containing 4 [Homo sapiens] 39 0.005
gi|6912678 sperm associated antigen 6 isoform 1 [Homo sapiens] 39 0.007
gi|27262641 sperm associated antigen 6 isoform 2 [Homo sapiens] 39 0.007
gi|207029299 NIMA-related kinase 10 isoform 3 [Homo sapiens] 38 0.015
gi|224589129 karyopherin 7 [Homo sapiens] 34 0.22
gi|32455246 beta isoform of regulatory subunit A, protein phosph... 34 0.22
gi|32455244 beta isoform of regulatory subunit A, protein phosph... 34 0.22
gi|4502247 armadillo repeat protein [Homo sapiens] 33 0.29
gi|148227672 catenin (cadherin-associated protein), beta 1, 88kD... 33 0.49
gi|148233338 catenin (cadherin-associated protein), beta 1, 88kD... 33 0.49
gi|4503131 catenin (cadherin-associated protein), beta 1, 88kDa ... 33 0.49
gi|19923142 karyopherin beta 1 [Homo sapiens] 32 0.65
gi|4504811 junction plakoglobin [Homo sapiens] 32 0.84
gi|12056468 junction plakoglobin [Homo sapiens] 32 0.84
gi|14165274 golgi-associated microtubule-binding protein HOOK3 [... 32 0.84
gi|21361399 alpha isoform of regulatory subunit A, protein phosp... 32 1.1
gi|53829376 plakophilin 4 isoform b [Homo sapiens] 31 1.4
gi|53829374 plakophilin 4 isoform a [Homo sapiens] 31 1.4
gi|73695475 protein BAP28 [Homo sapiens] 31 1.4
gi|38570064 hypothetical protein LOC136895 [Homo sapiens] 31 1.9
gi|238776799 SVH protein isoform d [Homo sapiens] 30 2.5
gi|238776795 SVH protein isoform c [Homo sapiens] 30 2.5
gi|155030202 RAP1, GTP-GDP dissociation stimulator 1 isoform 6 [... 30 2.5
gi|187608784 transmembrane channel-like 6 [Homo sapiens] 30 4.2
gi|187608791 transmembrane channel-like 6 [Homo sapiens] 30 4.2
gi|93102424 hypothetical protein LOC23116 [Homo sapiens] 29 7.1
gi|57863271 hypothetical protein LOC23078 isoform a [Homo sapiens] 29 7.1
gi|57863273 hypothetical protein LOC23078 isoform b [Homo sapiens] 29 7.1
>gi|7657530 rhabdoid tumor deletion region protein 1 [Homo sapiens]
Length = 348
Score = 671 bits (1732), Expect = 0.0
Identities = 348/348 (100%), Positives = 348/348 (100%)
Query: 1 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI 60
MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI
Sbjct: 1 MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI 60
Query: 61 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP 120
YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP
Sbjct: 61 YKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDP 120
Query: 121 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ 180
SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ
Sbjct: 121 SPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQ 180
Query: 181 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL 240
EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL
Sbjct: 181 EDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLL 240
Query: 241 KDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLA 300
KDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLA
Sbjct: 241 KDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLA 300
Query: 301 EAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP 348
EAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP
Sbjct: 301 EAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP 348
>gi|189409124 armadillo repeat containing 3 [Homo sapiens]
Length = 872
Score = 48.1 bits (113), Expect = 1e-05
Identities = 70/303 (23%), Positives = 118/303 (38%), Gaps = 24/303 (7%)
Query: 23 YGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECIYKAMNIGCMENLKALLKDSNSM 82
+ H L L L S D ++ ++ + +L+ D +C K + + + LLK +
Sbjct: 147 FEHGGLEPLIRLLSSPDPDVKKNSMECIYNLVQDFQCRAKLQELNAIPPILDLLKSEYPV 206
Query: 83 VRIKTTEVLHITASHSVGRYAF-----LEHDIVLALSFLLND---PSPVCRGNLYKAYMQ 134
+++ + L + A+ R L+H I + + LND + N +
Sbjct: 207 IQLLALKTLGVIANDKESRTMLRDNQGLDHLIKILETKELNDLHIEALAVIANCLEDMDT 266
Query: 135 LVQVPR--GAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQEDATEAL--GSN 190
+VQ+ + G ++++S S++ + Q+ + + L
Sbjct: 267 MVQIQQTGGLKKLLSFAENSTI----------PDIQKNAAKAITKAAYDPENRKLFHEQE 316
Query: 191 VVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLLKDPVEHVKSN 250
V L L S N + A++A+ + G K + IP L+ LLK E V+
Sbjct: 317 VEKCLVALLGSENDGTKIAASQAI-SAMCENSGSKDFFNNQGIPQLIQLLKSDNEEVREA 375
Query: 251 AAGALMFATVITEGK-YAALEAQAIGLLLELLHSPMTIARLNATKALTMLAEAPEGRKAL 309
AA AL T AA EA I L+ LL S A NA LT +A R +
Sbjct: 376 AALALANLTTCNPANANAAAEADGIDPLINLLSSKRDGAIANAATVLTNMAMQEPLRLNI 435
Query: 310 QTH 312
Q H
Sbjct: 436 QNH 438
Score = 37.4 bits (85), Expect = 0.020
Identities = 29/105 (27%), Positives = 45/105 (42%)
Query: 206 IRSKAARALLNVSISREGKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEGK 265
I A+ L N+S K Q+ + L+ LL P VK N+ + + +
Sbjct: 125 IHEFASLCLANMSAEYTSKVQIFEHGGLEPLIRLLSSPDPDVKKNSMECIYNLVQDFQCR 184
Query: 266 YAALEAQAIGLLLELLHSPMTIARLNATKALTMLAEAPEGRKALQ 310
E AI +L+LL S + +L A K L ++A E R L+
Sbjct: 185 AKLQELNAIPPILDLLKSEYPVIQLLALKTLGVIANDKESRTMLR 229
Score = 30.4 bits (67), Expect = 2.5
Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 2/239 (0%)
Query: 18 QITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECIYKAMNIGCMENLKALLK 77
QI G + L E D+Q + A A+ +DPE + L ALL
Sbjct: 269 QIQQTGGLKKLLSFAENSTIPDIQ--KNAAKAITKAAYDPENRKLFHEQEVEKCLVALLG 326
Query: 78 DSNSMVRIKTTEVLHITASHSVGRYAFLEHDIVLALSFLLNDPSPVCRGNLYKAYMQLVQ 137
N +I ++ + +S + F I + L +D V
Sbjct: 327 SENDGTKIAASQAISAMCENSGSKDFFNNQGIPQLIQLLKSDNEEVREAAALALANLTTC 386
Query: 138 VPRGAQEIISKGLISSLVWKLQVEVEEEEFQEFILDTLVLCLQEDATEALGSNVVLVLKQ 197
P A I L+ L + + + T + + +++ +
Sbjct: 387 NPANANAAAEADGIDPLINLLSSKRDGAIANAATVLTNMAMQEPLRLNIQNHDIMHAIIS 446
Query: 198 KLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALM 256
L SAN ++SKAA A+ + E + ++ + + LV LL+ + V+ +A+ A+M
Sbjct: 447 PLRSANTVVQSKAALAVTATACDVEARTELRNSGGLEPLVELLRSKNDEVRKHASWAVM 505
>gi|31657114 armadillo repeat containing 4 [Homo sapiens]
Length = 1044
Score = 39.3 bits (90), Expect = 0.005
Identities = 73/330 (22%), Positives = 126/330 (38%), Gaps = 63/330 (19%)
Query: 35 LQSEDLQTRQKALMALCDLMHDPECIYKAMNIGCMENLKALLKDSNSMVRIKTTEVLHIT 94
L++++++ + +L L ++ H+P+ +++G + + +L + ++ E +
Sbjct: 503 LETDEVKCKIGSLKILKEISHNPQIRQNIVDLGGLPIMVNILDSPHKSLKCLAAETIANV 562
Query: 95 ASHSVGRYAFLEHDIVLALSFLLN---DPSPVCRGNLYKAYMQLVQVPR-GA-------- 142
A R +H + L LL+ D + + +LY+A + V+V R GA
Sbjct: 563 AKFKRARRVVRQHGGITKLVALLDCAHDSTKPAQSSLYEA--RDVEVARCGALALWSCSK 620
Query: 143 ----QEIISKG----------------LISSLVWKLQVEVEEEEFQ-----EFILDTLVL 177
+E I K ++ +V LQ EE ++ E I++ LV
Sbjct: 621 SHTNKEAIRKAGGIPLLARLLKTSHENMLIPVVGTLQECASEENYRAAIKAERIIENLVK 680
Query: 178 CLQEDATEALGSNVVLVLKQ---------------------KLLSANQNIRSKAA--RAL 214
L + E L + + + Q LL+ N AA A+
Sbjct: 681 NLNSE-NEQLQEHCAMAIYQCAEDKETRDLVRLHGGLKPLASLLNNTDNKERLAAVTGAI 739
Query: 215 LNVSISREGKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEGKYAALEAQAI 274
SIS+E + + I LV LL D E V N GAL E + + I
Sbjct: 740 WKCSISKENVTKFREYKAIETLVGLLTDQPEEVLVNVVGALGECCQERENRVIVRKCGGI 799
Query: 275 GLLLELLHSPMTIARLNATKALTMLAEAPE 304
L+ LL +N TKA+ A PE
Sbjct: 800 QPLVNLLVGINQALLVNVTKAVGACAVEPE 829
>gi|6912678 sperm associated antigen 6 isoform 1 [Homo sapiens]
Length = 509
Score = 38.9 bits (89), Expect = 0.007
Identities = 60/266 (22%), Positives = 101/266 (37%), Gaps = 62/266 (23%)
Query: 41 QTRQKALMALCDLMHDPECIYKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVG 100
+ R + + + +L P+ I N G M L+ LL D + TA+ ++G
Sbjct: 15 KARTQFVQMVAELATRPQNIETLQNAGVMSLLRTLLLD--------VVPTIQQTAALALG 66
Query: 101 RYAFLEHDIVLALSFLLNDPSPVC----RGNLYKAYMQLV------QVPRGAQEIISKGL 150
R A D+ A+ P V + YK V P+ AQ I+ G
Sbjct: 67 RLANYNDDLAEAVVKCDILPQLVYSLAEQNRFYKKAAAFVLRAVGKHSPQLAQAIVDCGA 126
Query: 151 ISSLV---------------WKLQ-VEVEEEEFQEFILDT-----LVLCLQED------- 182
+ +LV W L+ + E + ++D LVLC+QE
Sbjct: 127 LDTLVICLEDFDPGVKEAAAWALRYIARHNAELSQAVVDAGAVPLLVLCIQEPEIALKRI 186
Query: 183 ---------------ATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSI-SREGKKQ 226
A + + V L Q +L+ + ++ + AL VS S + +
Sbjct: 187 AASALSDIAKHSPELAQTVVDAGAVAHLAQMILNPDAKLKHQILSALSQVSKHSVDLAEM 246
Query: 227 VCHFDVIPILVHLLKDPVEHVKSNAA 252
V ++ P+++ LKD E+VK NA+
Sbjct: 247 VVEAEIFPVVLTCLKDKDEYVKKNAS 272
>gi|27262641 sperm associated antigen 6 isoform 2 [Homo sapiens]
Length = 458
Score = 38.9 bits (89), Expect = 0.007
Identities = 60/266 (22%), Positives = 101/266 (37%), Gaps = 62/266 (23%)
Query: 41 QTRQKALMALCDLMHDPECIYKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVG 100
+ R + + + +L P+ I N G M L+ LL D + TA+ ++G
Sbjct: 15 KARTQFVQMVAELATRPQNIETLQNAGVMSLLRTLLLD--------VVPTIQQTAALALG 66
Query: 101 RYAFLEHDIVLALSFLLNDPSPVC----RGNLYKAYMQLV------QVPRGAQEIISKGL 150
R A D+ A+ P V + YK V P+ AQ I+ G
Sbjct: 67 RLANYNDDLAEAVVKCDILPQLVYSLAEQNRFYKKAAAFVLRAVGKHSPQLAQAIVDCGA 126
Query: 151 ISSLV---------------WKLQ-VEVEEEEFQEFILDT-----LVLCLQED------- 182
+ +LV W L+ + E + ++D LVLC+QE
Sbjct: 127 LDTLVICLEDFDPGVKEAAAWALRYIARHNAELSQAVVDAGAVPLLVLCIQEPEIALKRI 186
Query: 183 ---------------ATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSI-SREGKKQ 226
A + + V L Q +L+ + ++ + AL VS S + +
Sbjct: 187 AASALSDIAKHSPELAQTVVDAGAVAHLAQMILNPDAKLKHQILSALSQVSKHSVDLAEM 246
Query: 227 VCHFDVIPILVHLLKDPVEHVKSNAA 252
V ++ P+++ LKD E+VK NA+
Sbjct: 247 VVEAEIFPVVLTCLKDKDEYVKKNAS 272
>gi|207029299 NIMA-related kinase 10 isoform 3 [Homo sapiens]
Length = 712
Score = 37.7 bits (86), Expect = 0.015
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 19 ITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECIYKAMNIGCMENLKALLKD 78
+TT+ H+ L L L + D +L+AL L EC K + +ENL +L +
Sbjct: 205 VTTSGAHKTLVNL---LGARDTNVLLGSLLALASLAESQECREKISELNIVENLLMILHE 261
Query: 79 SNSMVRIKTTEVLH-ITASHSVGRYAFLEHDIVLALSFLLNDPSPVCRGNLYKAYMQLVQ 137
+ + + T E+L + A V L I + LS L +D + L+ LVQ
Sbjct: 262 YDLLSKRLTAELLRLLCAEPQVKEQVKLYEGIPVLLSLLHSDHLKL----LWSIVWILVQ 317
Query: 138 V---PRGAQEIISKGLISSLVWKLQ 159
V P + EI G I L+ LQ
Sbjct: 318 VCEDPETSVEIRIWGGIKQLLHILQ 342
>gi|224589129 karyopherin 7 [Homo sapiens]
Length = 516
Score = 33.9 bits (76), Expect = 0.22
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Query: 175 LVLCLQEDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISR-EGKKQVCHFDVI 233
+V E A+ + ++ VL Q L +I+ +AA AL NV+ +Q+ +DV+
Sbjct: 310 IVTGTDEQTQMAIDAGMLNVLPQLLQHNKPSIQKEAAWALSNVAAGPCHHIQQLLAYDVL 369
Query: 234 PILVHLLKDPVEHVKSNAAGALM-FATVITEGKYAAL-EAQAIGLLLELLHSPMTIARLN 291
P LV LLK+ V+ A + FAT T + L + + L+ LL +P L
Sbjct: 370 PPLVALLKNGEFKVQKEAVWMVANFATGATMDQLIQLVHSGVLEPLVNLLTAPDVKIVLI 429
Query: 292 ATKALTMLAEAPEGR 306
++ + +A E R
Sbjct: 430 ILDVISCILQAAEKR 444
>gi|32455246 beta isoform of regulatory subunit A, protein
phosphatase 2 isoform a [Homo sapiens]
Length = 601
Score = 33.9 bits (76), Expect = 0.22
Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 16/162 (9%)
Query: 189 SNVVLVLKQKLLSANQNIRSKAARAL--LNVSISREGKKQVCHFDVIPILVHLLKDPVEH 246
++++ + L +R+ AA + L ++ E ++ + ++P + L+ D +H
Sbjct: 293 NDLIPAFQNLLKDCEAEVRAAAAHKVKELGENLPIEDRETIIMNQILPYIKELVSDTNQH 352
Query: 247 VKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLAEAPEGR 306
VKS A +M + I GK +E + L L L RLN L + E R
Sbjct: 353 VKSALASVIMGLSTIL-GKENTIE-HLLPLFLAQLKDECPDVRLNIISNLDCVNEVIGIR 410
Query: 307 KALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP 348
+ Q+ +P V A R+ +++IE+ P
Sbjct: 411 QLSQSLLPAI------------VELAEDAKWRVRLAIIEYMP 440
>gi|32455244 beta isoform of regulatory subunit A, protein
phosphatase 2 isoform b [Homo sapiens]
Length = 667
Score = 33.9 bits (76), Expect = 0.22
Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 16/162 (9%)
Query: 189 SNVVLVLKQKLLSANQNIRSKAARAL--LNVSISREGKKQVCHFDVIPILVHLLKDPVEH 246
++++ + L +R+ AA + L ++ E ++ + ++P + L+ D +H
Sbjct: 293 NDLIPAFQNLLKDCEAEVRAAAAHKVKELGENLPIEDRETIIMNQILPYIKELVSDTNQH 352
Query: 247 VKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLAEAPEGR 306
VKS A +M + I GK +E + L L L RLN L + E R
Sbjct: 353 VKSALASVIMGLSTIL-GKENTIE-HLLPLFLAQLKDECPDVRLNIISNLDCVNEVIGIR 410
Query: 307 KALQTHVPTFRAMEVETYEKPQVAEALQRAARIAISVIEFKP 348
+ Q+ +P V A R+ +++IE+ P
Sbjct: 411 QLSQSLLPAI------------VELAEDAKWRVRLAIIEYMP 440
>gi|4502247 armadillo repeat protein [Homo sapiens]
Length = 962
Score = 33.5 bits (75), Expect = 0.29
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 233 IPILVHLLKDPVEHVKSNAAGALMFATVITEG-KYAALEAQAIGLLLELLHSPMTIARLN 291
+P ++ +L+ PV+ VK+NAA L EG K + + + LL+ LL P R
Sbjct: 360 LPEVLAMLRHPVDPVKANAAAYLQHLCFENEGVKRRVRQLRGLPLLVALLDHPRAEVRRR 419
Query: 292 ATKALTMLA 300
A AL L+
Sbjct: 420 ACGALRNLS 428
Score = 31.6 bits (70), Expect = 1.1
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 206 IRSKAARALLNVSISREG-KKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATV--IT 262
+++ AA L ++ EG K++V +P+LV LL P V+ A GAL + T
Sbjct: 374 VKANAAAYLQHLCFENEGVKRRVRQLRGLPLLVALLDHPRAEVRRRACGALRNLSYGRDT 433
Query: 263 EGKYAALEAQAIGLLLELLHS 283
+ K A + + L+ LL +
Sbjct: 434 DNKAAIRDCGGVPALVRLLRA 454
>gi|148227672 catenin (cadherin-associated protein), beta 1, 88kDa
[Homo sapiens]
Length = 781
Score = 32.7 bits (73), Expect = 0.49
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 231 DVIPILVHLLKDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHS 283
+ IP+ V LL P+E+++ AAG L E A A L ELLHS
Sbjct: 594 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS 646
>gi|148233338 catenin (cadherin-associated protein), beta 1, 88kDa
[Homo sapiens]
Length = 781
Score = 32.7 bits (73), Expect = 0.49
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 231 DVIPILVHLLKDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHS 283
+ IP+ V LL P+E+++ AAG L E A A L ELLHS
Sbjct: 594 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS 646
>gi|4503131 catenin (cadherin-associated protein), beta 1, 88kDa
[Homo sapiens]
Length = 781
Score = 32.7 bits (73), Expect = 0.49
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 231 DVIPILVHLLKDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHS 283
+ IP+ V LL P+E+++ AAG L E A A L ELLHS
Sbjct: 594 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS 646
>gi|19923142 karyopherin beta 1 [Homo sapiens]
Length = 876
Score = 32.3 bits (72), Expect = 0.65
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 28 LPKLKEELQSEDLQTRQKALMALCDLMHDPE-CIYKAMNIGCMENLKALLKDSNSMVRIK 86
LP +KE +++ D + R A+MA ++ PE K + I M L L+KD + +VR
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVR-- 425
Query: 87 TTEVLHITASHSVGR 101
TA+ +VGR
Sbjct: 426 ------DTAAWTVGR 434
>gi|4504811 junction plakoglobin [Homo sapiens]
Length = 745
Score = 32.0 bits (71), Expect = 0.84
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 224 KKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHS 283
+ ++ + IP+ V LL VE+++ AAG L E A A L+ELLHS
Sbjct: 577 RMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHS 636
Query: 284 PMTIARLNATKALTMLAE--APEGRKALQTHV 313
A L ++E P+ RK + +
Sbjct: 637 RNEGTATYAAAVLFRISEDKNPDYRKRVSVEL 668
Score = 29.3 bits (64), Expect = 5.5
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 214 LLNVSISREGKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEG-KYAALEAQ 272
L N+S REG + IP LV +L PVE V A L + EG K A A
Sbjct: 209 LHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLAD 268
Query: 273 AIGLLLELLHSPMTIARLNATKALTMLAEAPEGRKAL 309
+ ++ LL+ T L +LA + K +
Sbjct: 269 GLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQESKLI 305
>gi|12056468 junction plakoglobin [Homo sapiens]
Length = 745
Score = 32.0 bits (71), Expect = 0.84
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 224 KKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLLLELLHS 283
+ ++ + IP+ V LL VE+++ AAG L E A A L+ELLHS
Sbjct: 577 RMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHS 636
Query: 284 PMTIARLNATKALTMLAE--APEGRKALQTHV 313
A L ++E P+ RK + +
Sbjct: 637 RNEGTATYAAAVLFRISEDKNPDYRKRVSVEL 668
Score = 29.3 bits (64), Expect = 5.5
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 214 LLNVSISREGKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEG-KYAALEAQ 272
L N+S REG + IP LV +L PVE V A L + EG K A A
Sbjct: 209 LHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLAD 268
Query: 273 AIGLLLELLHSPMTIARLNATKALTMLAEAPEGRKAL 309
+ ++ LL+ T L +LA + K +
Sbjct: 269 GLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQESKLI 305
>gi|14165274 golgi-associated microtubule-binding protein HOOK3
[Homo sapiens]
Length = 718
Score = 32.0 bits (71), Expect = 0.84
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 105 LEHDIVLALSFLLNDPSPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVEE 164
++H ++ A+ L++ SPV GN AY+ L + + E +++ L + EE
Sbjct: 146 VQHVVMTAIQELMSKESPVSAGN--DAYVDLDRQLKKTTEELNEALSAK---------EE 194
Query: 165 EEFQEFILDTLVLCLQEDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISRE 222
+ LD V LQE+ + L N VL+ + + ++ S A R L + E
Sbjct: 195 IAQRCHELDMQVAALQEEKSSLLAENQVLMERLNQSDSIEDPNSPAGRRHLQLQTQLE 252
>gi|21361399 alpha isoform of regulatory subunit A, protein
phosphatase 2 [Homo sapiens]
Length = 589
Score = 31.6 bits (70), Expect = 1.1
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 14/131 (10%)
Query: 218 SISREGKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGLL 277
++S + ++ V ++P + L+ D +HVKS A +M + I GK +E + L
Sbjct: 312 NLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL-GKDNTIE-HLLPLF 369
Query: 278 LELLHSPMTIARLNATKALTMLAEAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQRAA 337
L L RLN L + E R+ Q+ +P V A
Sbjct: 370 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI------------VELAEDAKW 417
Query: 338 RIAISVIEFKP 348
R+ +++IE+ P
Sbjct: 418 RVRLAIIEYMP 428
>gi|53829376 plakophilin 4 isoform b [Homo sapiens]
Length = 1149
Score = 31.2 bits (69), Expect = 1.4
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 224 KKQVCHFDVIPILVHLLKDPVEHVKSNAAGA---LMFATVITEGKYAALEAQAIGLLLEL 280
K +VC I LV LL V V+ NA GA L+F E K A I LL L
Sbjct: 563 KMEVCRLGGIKHLVDLLDHRVLEVQKNACGALRNLVFGKSTDENKIAMKNVGGIPALLRL 622
Query: 281 L 281
L
Sbjct: 623 L 623
>gi|53829374 plakophilin 4 isoform a [Homo sapiens]
Length = 1192
Score = 31.2 bits (69), Expect = 1.4
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 224 KKQVCHFDVIPILVHLLKDPVEHVKSNAAGA---LMFATVITEGKYAALEAQAIGLLLEL 280
K +VC I LV LL V V+ NA GA L+F E K A I LL L
Sbjct: 563 KMEVCRLGGIKHLVDLLDHRVLEVQKNACGALRNLVFGKSTDENKIAMKNVGGIPALLRL 622
Query: 281 L 281
L
Sbjct: 623 L 623
>gi|73695475 protein BAP28 [Homo sapiens]
Length = 2144
Score = 31.2 bits (69), Expect = 1.4
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 21/146 (14%)
Query: 118 NDPSPVCR------GNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQVEVE-----EEE 166
NDP C LYK ++ Q ISK +L+ L ++E EE+
Sbjct: 1983 NDPEKCCLLLQFILNCLYKIFLF------DTQHFISKERAEALMMPLVDQLENRLGGEEK 2036
Query: 167 FQEFILDTLVLCLQEDATEALGSNVVLVLKQKLLSANQNIRSKAA-RALLNVSISREGKK 225
FQE + L+ C+ + + ++ L ++L ++ K AL+ V E K
Sbjct: 2037 FQERVTKHLIPCIAQFSVAMADDSLWKPLNYQILLKTRDSSPKVRFAALITVLALAEKLK 2096
Query: 226 Q---VCHFDVIPILVHLLKDPVEHVK 248
+ V + IP L L++D E V+
Sbjct: 2097 ENYIVLLPESIPFLAELMEDECEEVE 2122
>gi|38570064 hypothetical protein LOC136895 [Homo sapiens]
Length = 590
Score = 30.8 bits (68), Expect = 1.9
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 6 NSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECIYKAMN 65
++ ELP +T+ Y + PK+ + ++EDL RQ++L P K +
Sbjct: 407 STYELPSCYPTKDLTSIYDIKPFPKITDTKKTEDLYWRQQSLKT------QPTPYCKPDH 460
Query: 66 IGCMENLKALLKDSNSM 82
ENLK+ L+D +M
Sbjct: 461 WIHYENLKSPLRDQYNM 477
>gi|238776799 SVH protein isoform d [Homo sapiens]
Length = 249
Score = 30.4 bits (67), Expect = 2.5
Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 194 VLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLLKDP 243
++ K+ +NQ+I+ KA AL N+S++ E + ++ V+ +L++L ++P
Sbjct: 107 IVANKINHSNQSIKEKALNALNNLSVNVENQIKI-KVQVLKLLLNLSENP 155
>gi|238776795 SVH protein isoform c [Homo sapiens]
Length = 284
Score = 30.4 bits (67), Expect = 2.5
Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 194 VLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLLKDP 243
++ K+ +NQ+I+ KA AL N+S++ E + ++ V+ +L++L ++P
Sbjct: 142 IVANKINHSNQSIKEKALNALNNLSVNVENQIKI-KVQVLKLLLNLSENP 190
>gi|155030202 RAP1, GTP-GDP dissociation stimulator 1 isoform 6
[Homo sapiens]
Length = 516
Score = 30.4 bits (67), Expect = 2.5
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 189 SNVVLVLKQKLLSANQNIRSKAARALLNVSI-SREGKKQVCHFDVIPILVHLLKDPVEHV 247
+ ++ L Q L S +Q + + RAL N+ S+ K+Q ++ LV L K +EH
Sbjct: 89 AGLISPLVQLLNSKDQEVLLQTGRALGNICYDSQSSKEQFASTNIAEELVKLFKKQIEHD 148
Query: 248 KSNAAGALMFATVITEG-KYAALEAQAIGLLLELL 281
K ++ + K +EA + LLE++
Sbjct: 149 KREMIFEVLAPLAENDAIKLQLVEAGLVECLLEIV 183
>gi|187608784 transmembrane channel-like 6 [Homo sapiens]
Length = 805
Score = 29.6 bits (65), Expect = 4.2
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 14 INATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI 60
I+A + ++ ++ K LQ ++++TR K L+A L H P +
Sbjct: 378 IHAITVFCSWDYKVTQKRASRLQQDNIRTRLKELLAEWQLRHSPRSV 424
>gi|187608791 transmembrane channel-like 6 [Homo sapiens]
Length = 805
Score = 29.6 bits (65), Expect = 4.2
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 14 INATQITTAYGHRALPKLKEELQSEDLQTRQKALMALCDLMHDPECI 60
I+A + ++ ++ K LQ ++++TR K L+A L H P +
Sbjct: 378 IHAITVFCSWDYKVTQKRASRLQQDNIRTRLKELLAEWQLRHSPRSV 424
>gi|93102424 hypothetical protein LOC23116 [Homo sapiens]
Length = 1720
Score = 28.9 bits (63), Expect = 7.1
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 35 LQSEDLQTRQKALMALCDLM--HDPECIYKAMNIGCMENLKALLKDSNSMVRIKTTEVLH 92
L ED + R +A+ L ++ +P + +G + L LL DSN V T EVLH
Sbjct: 360 LDQEDYKNRTQAVEELKQVLGKFNPSSTPHSSLVGFISLLYNLLDDSNFKVVHGTLEVLH 419
Query: 93 ITASHSVGRYAFLEHDIVLALSFLLNDPSPVCRGNLYKAYMQLVQVPRGAQEII 146
+ + ++ A +L D V + K +++L++ G Q+++
Sbjct: 420 LLVIRLGEQVQQFLGPVIAASVKVLADNKLVIKQEYMKIFLKLMK-EVGPQQVL 472
>gi|57863271 hypothetical protein LOC23078 isoform a [Homo sapiens]
Length = 1905
Score = 28.9 bits (63), Expect = 7.1
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 188 GSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLLKDPVEHV 247
G NV + QKL++A +RS A + ++N S +V+ I+ HL K P E +
Sbjct: 944 GPNVPEPILQKLVAAFGELRSLADQGIINYPYSTR--------EVVNIVKHLQKFPTEGL 995
Query: 248 KS 249
S
Sbjct: 996 SS 997
>gi|57863273 hypothetical protein LOC23078 isoform b [Homo sapiens]
Length = 1039
Score = 28.9 bits (63), Expect = 7.1
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 188 GSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLLKDPVEHV 247
G NV + QKL++A +RS A + ++N S +V+ I+ HL K P E +
Sbjct: 944 GPNVPEPILQKLVAAFGELRSLADQGIINYPYSTR--------EVVNIVKHLQKFPTEGL 995
Query: 248 KS 249
S
Sbjct: 996 SS 997
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,053,163
Number of Sequences: 37866
Number of extensions: 425339
Number of successful extensions: 1265
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1223
Number of HSP's gapped (non-prelim): 55
length of query: 348
length of database: 18,247,518
effective HSP length: 103
effective length of query: 245
effective length of database: 14,347,320
effective search space: 3515093400
effective search space used: 3515093400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.