Guide to the Human Genome
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Name: ARMC10 Sequence: fasta or formatted (284aa) NCBI GI: 238776795
Description:

SVH protein isoform c

Referenced in:

Additional Interaction Domain Families

Other entries for this name:
alt prot [308aa] SVH protein isoform b
alt prot [284aa] SVH protein isoform e
alt prot [249aa] SVH protein isoform d
alt prot [225aa] SVH protein isoform f
alt prot [343aa] SVH protein isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         23           2
 C cysteine            1.8          5           1
 D aspartate           3.5         10           2
 E glutamate           7.7         22           2
 F phenylalanine       2.1          6           2
 G glycine             8.5         24           2
 H histidine           2.1          6           2
 I isoleucine          7.0         20           2
 K lysine              5.6         16           1
 L leucine            13.7         39           3
 M methionine          0.7          2           1
 N asparagine          5.6         16           2
 P proline             2.8          8           1
 Q glutamine           4.9         14           1
 R arginine            5.3         15           3
 S serine              7.0         20           2
 T threonine           4.6         13           1
 V valine              6.0         17           2
 W tryptophan          1.1          3           1
 Y tyrosine            1.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SVH protein isoform c 
ARMC10                0.927   SVH protein isoform a 
ARMC10                0.829   SVH protein isoform d 
LOC389137             0.745   PREDICTED: similar to SVH protein isoform 2 
LOC389137             0.739   PREDICTED: similar to SVH protein isoform 2 
LOC389137             0.739   PREDICTED: similar to SVH protein isoform 1 
ARMC10                0.735   SVH protein isoform b 
LOC389137             0.722   PREDICTED: similar to SVH protein isoform 1 
ARMC10                0.722   SVH protein isoform f 
ARMC10                0.720   SVH protein isoform e 
LOC389137             0.717   PREDICTED: similar to SVH protein isoform 1 
LOC389137             0.717   PREDICTED: similar to SVH protein isoform 2 
ARMCX3                0.295   armadillo repeat containing, X-linked 3 
ARMCX3                0.295   armadillo repeat containing, X-linked 3 
ARMCX3                0.295   armadillo repeat containing, X-linked 3 
ARMCX1                0.270   armadillo repeat containing, X-linked 1 
ARMCX2                0.159   ALEX2 protein 
ARMCX2                0.159   ALEX2 protein 
LOC100292655          0.135   PREDICTED: similar to armadillo repeat containing, ...
ARMCX5                0.098   armadillo repeat containing, X-linked 5 
ARMCX6                0.079   armadillo repeat containing, X-linked 6 
ARMCX6                0.079   armadillo repeat containing, X-linked 6 
GPRASP2               0.066   G protein-coupled receptor associated sorting protei...
GPRASP2               0.066   G protein-coupled receptor associated sorting protei...
GPRASP1               0.051   G protein-coupled receptor associated sorting prote...
GPRASP1               0.051   G protein-coupled receptor associated sorting prote...
GPRASP1               0.051   G protein-coupled receptor associated sorting prote...
BHLHB9                0.038   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.038   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.038   basic helix-loop-helix domain containing, class B, ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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