Guide to the Human Genome
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Name: C7orf31 Sequence: fasta or formatted (590aa) NCBI GI: 38570064
Description:

hypothetical protein LOC136895

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1         18           1
 C cysteine            2.0         12           2
 D aspartate           5.1         30           2
 E glutamate           7.8         46           3
 F phenylalanine       3.9         23           1
 G glycine             4.7         28           2
 H histidine           3.7         22           1
 I isoleucine          4.7         28           2
 K lysine              7.1         42           3
 L leucine             8.1         48           2
 M methionine          1.7         10           1
 N asparagine          4.6         27           2
 P proline            10.3         61           2
 Q glutamine           4.4         26           2
 R arginine            5.4         32           2
 S serine              6.1         36           2
 T threonine           6.8         40           1
 V valine              3.7         22           1
 W tryptophan          1.4          8           1
 Y tyrosine            5.3         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC136895 
NISCH                 0.007   nischarin 
MYO1G                 0.006   myosin IG 
C9orf98               0.006   putative adenylate kinase-like protein C9orf98 [Homo...
LOC100130764          0.006   PREDICTED: p150-like 
PTH2                  0.006   parathyroid hormone 2 preproprotein 
LOC100130764          0.005   PREDICTED: p150-like 
LOC100293629          0.005   PREDICTED: similar to putative p150 
LOC100291256          0.005   PREDICTED: hypothetical protein XP_002346845 
LOC100130764          0.005   PREDICTED: p150-like 
LOC100289365          0.005   PREDICTED: hypothetical protein XP_002342695 
LOC100290606          0.005   PREDICTED: hypothetical protein XP_002347335 
RTDR1                 0.005   rhabdoid tumor deletion region protein 1 
CA7                   0.004   carbonic anhydrase VII isoform 2 
CA7                   0.004   carbonic anhydrase VII isoform 1 
AIM1                  0.004   absent in melanoma 1 
PSMB6                 0.004   proteasome beta 6 subunit 
ZNF366                0.004   zinc finger protein 366 
PRAM1                 0.004   PML-RARA regulated adaptor molecule 1 
KIAA0182              0.004   genetic suppressor element 1 isoform 2 
KIAA0182              0.004   genetic suppressor element 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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