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Search of human proteins with 7657299
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657299 LBP-9 [Homo sapiens]
(479 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657299 LBP-9 [Homo sapiens] 984 0.0
gi|21361278 transcription factor CP2 [Homo sapiens] 724 0.0
gi|189491632 upstream binding protein 1 (LBP-1a) isoform b [Homo... 647 0.0
gi|189491634 upstream binding protein 1 (LBP-1a) isoform a [Homo... 629 e-180
gi|189491630 upstream binding protein 1 (LBP-1a) isoform a [Homo... 629 e-180
gi|239735569 grainyhead-like 1 [Homo sapiens] 107 3e-23
gi|38049009 sister-of-mammalian grainyhead protein isoform 2 [Ho... 103 3e-22
gi|42789723 sister-of-mammalian grainyhead protein isoform 3 [Ho... 103 3e-22
gi|38049007 sister-of-mammalian grainyhead protein isoform 1 [Ho... 103 3e-22
gi|170784817 transcription factor CP2-like 3 [Homo sapiens] 100 2e-21
gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo s... 35 0.20
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ... 33 0.57
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ... 33 0.57
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 33 0.75
gi|93277096 limbin [Homo sapiens] 32 0.97
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 32 1.7
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 32 1.7
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 32 1.7
gi|11067749 bromodomain containing protein 3 [Homo sapiens] 32 1.7
gi|239749961 PREDICTED: hypothetical protein LOC100129826 [Homo ... 31 2.8
gi|116875765 tight junction protein 1 isoform b [Homo sapiens] 30 3.7
gi|116875767 tight junction protein 1 isoform a [Homo sapiens] 30 3.7
gi|213688415 coiled-coil domain containing 66 isoform 1 [Homo sa... 30 3.7
gi|213688413 coiled-coil domain containing 66 isoform 2 [Homo sa... 30 3.7
gi|219842214 protein phosphatase 1, regulatory (inhibitor) subun... 30 4.8
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun... 30 4.8
gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit... 30 4.8
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 30 4.8
gi|148746195 trichohyalin [Homo sapiens] 30 4.8
gi|32698700 PHD finger protein 8 [Homo sapiens] 30 4.8
>gi|7657299 LBP-9 [Homo sapiens]
Length = 479
Score = 984 bits (2543), Expect = 0.0
Identities = 479/479 (100%), Positives = 479/479 (100%)
Query: 1 MLFWHTQPEHYNQHNSGSYLRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVK 60
MLFWHTQPEHYNQHNSGSYLRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVK
Sbjct: 1 MLFWHTQPEHYNQHNSGSYLRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVK 60
Query: 61 LHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGW 120
LHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGW
Sbjct: 61 LHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGW 120
Query: 121 RWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRK 180
RWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRK
Sbjct: 121 RWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRK 180
Query: 181 HGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQ 240
HGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQ
Sbjct: 181 HGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQ 240
Query: 241 EKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNSFGLGEGNASPTHPVEALPV 300
EKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNSFGLGEGNASPTHPVEALPV
Sbjct: 241 EKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNSFGLGEGNASPTHPVEALPV 300
Query: 301 GSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSRDDLVQICGPADGIRLFN 360
GSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSRDDLVQICGPADGIRLFN
Sbjct: 301 GSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSRDDLVQICGPADGIRLFN 360
Query: 361 AIKGRNVRPKMTIYVCQELEQNRVPLQQKRDGSGDSNLSVYHAIFLEELTTLELIEKIAN 420
AIKGRNVRPKMTIYVCQELEQNRVPLQQKRDGSGDSNLSVYHAIFLEELTTLELIEKIAN
Sbjct: 361 AIKGRNVRPKMTIYVCQELEQNRVPLQQKRDGSGDSNLSVYHAIFLEELTTLELIEKIAN 420
Query: 421 LYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTIKAESNDGYHIILKCGL 479
LYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTIKAESNDGYHIILKCGL
Sbjct: 421 LYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTIKAESNDGYHIILKCGL 479
>gi|21361278 transcription factor CP2 [Homo sapiens]
Length = 502
Score = 724 bits (1870), Expect = 0.0
Identities = 349/469 (74%), Positives = 403/469 (85%), Gaps = 9/469 (1%)
Query: 16 SGSY-LRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVKLHEETLTYLNQGQS 74
+G+Y + DVLALPIFKQEE L P+NE ++ P QYVLCAATSPAVKLH+ETLTYLNQGQS
Sbjct: 35 AGAYSMSDVLALPIFKQEESSLPPDNENKILPFQYVLCAATSPAVKLHDETLTYLNQGQS 94
Query: 75 YEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGWRWSRPGDRILDIDI 134
YEIR+L+NRKLG+ ++N K VKSI RVVFHDRRLQYTEHQQLEGWRW+RPGDRILDIDI
Sbjct: 95 YEIRMLDNRKLGELPEINGKLVKSIFRVVFHDRRLQYTEHQQLEGWRWNRPGDRILDIDI 154
Query: 135 PLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRKHGGEKGVPFRVQID 194
P+SVGI+DPRA+PTQLN VEFLWDPAKR S FIQVHCISTEFT RKHGGEKGVPFRVQID
Sbjct: 155 PMSVGIIDPRANPTQLNTVEFLWDPAKRTSVFIQVHCISTEFTMRKHGGEKGVPFRVQID 214
Query: 195 TFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTIL 254
TFK+NENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRT EKEKYQPSYETTIL
Sbjct: 215 TFKENENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTPHEKEKYQPSYETTIL 274
Query: 255 TECSPWPDVAYQVNSAPSPSYNGSPNSFGLGEGNASPTHPVEALPVGSDHLLPSASIQDA 314
TECSPWP++ Y VN++PSP +N S +SF LGEGN SP H E P +D+LLP+ + Q+A
Sbjct: 275 TECSPWPEITY-VNNSPSPGFNSSHSSFSLGEGNGSPNHQPEPPPPVTDNLLPTTTPQEA 333
Query: 315 QQWLHRNRFSQFCRLFASFSGADLLKMSRDDLVQICGPADGIRLFNAIKGRNVRPKMTIY 374
QQWLHRNRFS F RLF +FSGADLLK++RDD++QICGPADGIRLFNA+KGR VRP++TIY
Sbjct: 334 QQWLHRNRFSTFTRLFTNFSGADLLKLTRDDVIQICGPADGIRLFNALKGRMVRPRLTIY 393
Query: 375 VCQELEQNRVPLQQKR-------DGSGDSNLSVYHAIFLEELTTLELIEKIANLYSISPQ 427
VCQE Q R QQ++ DG + VYHAI+LEELT +EL EKIA L+SISP
Sbjct: 394 VCQESLQLREQQQQQQQQQQKHEDGDSNGTFFVYHAIYLEELTAVELTEKIAQLFSISPC 453
Query: 428 HIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTIKAESNDGYHIILK 476
I ++Y+QGPTGIHV++S+EM+QNFQ+E+CF+L T+KAE+ND YHIILK
Sbjct: 454 QISQIYKQGPTGIHVLISDEMIQNFQEEACFILDTMKAETNDSYHIILK 502
>gi|189491632 upstream binding protein 1 (LBP-1a) isoform b [Homo
sapiens]
Length = 504
Score = 647 bits (1670), Expect = 0.0
Identities = 321/474 (67%), Positives = 392/474 (82%), Gaps = 14/474 (2%)
Query: 16 SGSY-LRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVKLHEETLTYLNQGQS 74
+G+Y + DVLALPIFKQE+ L + E PP QYV+CAATSPAVKLH+ETLTYLNQGQS
Sbjct: 32 AGAYSMSDVLALPIFKQEDSSLPLDGETEHPPFQYVMCAATSPAVKLHDETLTYLNQGQS 91
Query: 75 YEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGWRWSRPGDRILDIDI 134
YEIR+L+NRK+GD ++N K VKSIIRVVFHDRRLQYTEHQQLEGW+W+RPGDR+LD+DI
Sbjct: 92 YEIRMLDNRKMGDMPEINGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDI 151
Query: 135 PLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRKHGGEKGVPFRVQID 194
P+SVGI+D R +P+QLNAVEFLWDPAKR SAFIQVHCISTEFTPRKHGGEKGVPFR+Q+D
Sbjct: 152 PMSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVD 211
Query: 195 TFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTIL 254
TFKQNENGEYT+HLHSASCQIKVFKPKGADRKQKTDREKMEKRTA EKEKYQPSY+TTIL
Sbjct: 212 TFKQNENGEYTDHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAHEKEKYQPSYDTTIL 271
Query: 255 TECSPWPD--VAYQVNSAPSPS---YNGSPNSFGLGEGN-ASPTHPVE-ALPVGSDHLLP 307
TECSPWPD AY VN++PSP+ + ++ + + N +SP H + A + + P
Sbjct: 272 TECSPWPDAPTAY-VNNSPSPAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQTSGEQIQP 330
Query: 308 SASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSRDDLVQICGPADGIRLFNAIKGRNV 367
SA+IQ+ QQWL +NRFS + RLF++FSGADLLK++++DLVQICG ADGIRL+N++K R+V
Sbjct: 331 SATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNSLKSRSV 390
Query: 368 RPKMTIYVCQELEQNRV-PLQQKRDGSGDSNLS----VYHAIFLEELTTLELIEKIANLY 422
RP++TIYVC+E + V QQ+ S N S VYHAI+LEE+ E+ K+A ++
Sbjct: 391 RPRLTIYVCREQPSSTVLQGQQQAASSASENGSGAPYVYHAIYLEEMIASEVARKLALVF 450
Query: 423 SISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTIKAESNDGYHIILK 476
+I I++VYRQGPTGIH++VS++MVQNFQDESCF+ ST+KAES+DG HIILK
Sbjct: 451 NIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAESSDGIHIILK 504
>gi|189491634 upstream binding protein 1 (LBP-1a) isoform a [Homo
sapiens]
Length = 540
Score = 629 bits (1623), Expect = e-180
Identities = 321/509 (63%), Positives = 390/509 (76%), Gaps = 48/509 (9%)
Query: 16 SGSY-LRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVKLHEETLTYLNQGQS 74
+G+Y + DVLALPIFKQE+ L + E PP QYV+CAATSPAVKLH+ETLTYLNQGQS
Sbjct: 32 AGAYSMSDVLALPIFKQEDSSLPLDGETEHPPFQYVMCAATSPAVKLHDETLTYLNQGQS 91
Query: 75 YEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGWRWSRPGDRILDIDI 134
YEIR+L+NRK+GD ++N K VKSIIRVVFHDRRLQYTEHQQLEGW+W+RPGDR+LD+DI
Sbjct: 92 YEIRMLDNRKMGDMPEINGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDI 151
Query: 135 PLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRKHGGEKGVPFRVQID 194
P+SVGI+D R +P+QLNAVEFLWDPAKR SAFIQVHCISTEFTPRKHGGEKGVPFR+Q+D
Sbjct: 152 PMSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVD 211
Query: 195 TFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTIL 254
TFKQNENGEYT+HLHSASCQIKVFKPKGADRKQKTDREKMEKRTA EKEKYQPSY+TTIL
Sbjct: 212 TFKQNENGEYTDHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAHEKEKYQPSYDTTIL 271
Query: 255 TE------------------------------------CSPWPDV--AYQVNS-APSPSY 275
TE CSPWPD AY NS +P+P++
Sbjct: 272 TEMRLEPIIEDAVEHEQKKSSKRTLPADYGDSLAKRGSCSPWPDAPTAYVNNSPSPAPTF 331
Query: 276 NGSPNSF-GLGEGNAS-PTHPVE-ALPVGSDHLLPSASIQDAQQWLHRNRFSQFCRLFAS 332
S + + N+S P H + A + + PSA+IQ+ QQWL +NRFS + RLF++
Sbjct: 332 TSPQQSTCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSN 391
Query: 333 FSGADLLKMSRDDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRV-PLQQKRD 391
FSGADLLK++++DLVQICG ADGIRL+N++K R+VRP++TIYVC+E + V QQ+
Sbjct: 392 FSGADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAA 451
Query: 392 GSGDSNLS----VYHAIFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNE 447
S N S VYHAI+LEE+ E+ K+A +++I I++VYRQGPTGIH++VS++
Sbjct: 452 SSASENGSGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQ 511
Query: 448 MVQNFQDESCFVLSTIKAESNDGYHIILK 476
MVQNFQDESCF+ ST+KAES+DG HIILK
Sbjct: 512 MVQNFQDESCFLFSTVKAESSDGIHIILK 540
>gi|189491630 upstream binding protein 1 (LBP-1a) isoform a [Homo
sapiens]
Length = 540
Score = 629 bits (1623), Expect = e-180
Identities = 321/509 (63%), Positives = 390/509 (76%), Gaps = 48/509 (9%)
Query: 16 SGSY-LRDVLALPIFKQEEPQLSPENEARLPPLQYVLCAATSPAVKLHEETLTYLNQGQS 74
+G+Y + DVLALPIFKQE+ L + E PP QYV+CAATSPAVKLH+ETLTYLNQGQS
Sbjct: 32 AGAYSMSDVLALPIFKQEDSSLPLDGETEHPPFQYVMCAATSPAVKLHDETLTYLNQGQS 91
Query: 75 YEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEHQQLEGWRWSRPGDRILDIDI 134
YEIR+L+NRK+GD ++N K VKSIIRVVFHDRRLQYTEHQQLEGW+W+RPGDR+LD+DI
Sbjct: 92 YEIRMLDNRKMGDMPEINGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDI 151
Query: 135 PLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRKHGGEKGVPFRVQID 194
P+SVGI+D R +P+QLNAVEFLWDPAKR SAFIQVHCISTEFTPRKHGGEKGVPFR+Q+D
Sbjct: 152 PMSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVD 211
Query: 195 TFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTIL 254
TFKQNENGEYT+HLHSASCQIKVFKPKGADRKQKTDREKMEKRTA EKEKYQPSY+TTIL
Sbjct: 212 TFKQNENGEYTDHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAHEKEKYQPSYDTTIL 271
Query: 255 TE------------------------------------CSPWPDV--AYQVNS-APSPSY 275
TE CSPWPD AY NS +P+P++
Sbjct: 272 TEMRLEPIIEDAVEHEQKKSSKRTLPADYGDSLAKRGSCSPWPDAPTAYVNNSPSPAPTF 331
Query: 276 NGSPNSF-GLGEGNAS-PTHPVE-ALPVGSDHLLPSASIQDAQQWLHRNRFSQFCRLFAS 332
S + + N+S P H + A + + PSA+IQ+ QQWL +NRFS + RLF++
Sbjct: 332 TSPQQSTCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSN 391
Query: 333 FSGADLLKMSRDDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRV-PLQQKRD 391
FSGADLLK++++DLVQICG ADGIRL+N++K R+VRP++TIYVC+E + V QQ+
Sbjct: 392 FSGADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAA 451
Query: 392 GSGDSNLS----VYHAIFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNE 447
S N S VYHAI+LEE+ E+ K+A +++I I++VYRQGPTGIH++VS++
Sbjct: 452 SSASENGSGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQ 511
Query: 448 MVQNFQDESCFVLSTIKAESNDGYHIILK 476
MVQNFQDESCF+ ST+KAES+DG HIILK
Sbjct: 512 MVQNFQDESCFLFSTVKAESSDGIHIILK 540
>gi|239735569 grainyhead-like 1 [Homo sapiens]
Length = 618
Score = 107 bits (266), Expect = 3e-23
Identities = 109/422 (25%), Positives = 180/422 (42%), Gaps = 71/422 (16%)
Query: 48 QYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDR 107
+Y L A+ S K + T+TYLN+GQ Y I L E +K V+S+I VVF +
Sbjct: 253 EYTLEASKSLRQKPGDSTMTYLNKGQFYPITLKEVSSSEGIHHPISK-VRSVIMVVFAED 311
Query: 108 RLQYTEHQQLEGW--RWSRPGDRILDI-DIPLSVGILDPRASPTQLNAVEFLWDPAKRAS 164
+ + + + + W R R +DI D S + NA+ F WD A
Sbjct: 312 KSREDQLRHWKYWHSRQHTAKQRCIDIADYKESFNTIS-NIEEIAYNAISFTWDINDEAK 370
Query: 165 AFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGAD 224
FI V+C+ST+F+ +K G KG+P +Q+DT+ N + +H A CQIKVF KGA+
Sbjct: 371 VFISVNCLSTDFSSQK--GVKGLPLNIQVDTYSYNNRSN--KPVHRAYCQIKVFCDKGAE 426
Query: 225 RKQKTDREKMEKRTAQE-KEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNSFG 283
RK + + K KR + K PS++ +T P+ D+ Q P F
Sbjct: 427 RKIRDEERKQSKRKVSDVKVPLLPSHKRMDITVFKPFIDLDTQ------------PVLFI 474
Query: 284 LGEGNASPTHPVEALPVGSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGADLLKMSR 343
A+ LP+ S+ L S+ L R + +
Sbjct: 475 PDVHFANLQRGTHVLPIASEELEGEGSV------LKRGPYG-----------------TE 511
Query: 344 DDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRVPLQQKRDGSGDSNLSVYHA 403
DD P+ + K ++ +YV +E E+ V+ A
Sbjct: 512 DDFA--VPPSTKLARIEEPK------RVLLYVRKESEE------------------VFDA 545
Query: 404 IFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNEMVQNFQDESCFVLSTI 463
+ L+ + L+E I++ Y + I +++++ GI V + + +V+++ +E F L
Sbjct: 546 LMLKTPSLKGLMEAISDKYDVPHDKIGKIFKKCKKGILVNMDDNIVKHYSNEDTFQLQIE 605
Query: 464 KA 465
+A
Sbjct: 606 EA 607
>gi|38049009 sister-of-mammalian grainyhead protein isoform 2 [Homo
sapiens]
Length = 602
Score = 103 bits (258), Expect = 3e-22
Identities = 108/448 (24%), Positives = 189/448 (42%), Gaps = 68/448 (15%)
Query: 33 EPQLSPENEARLPPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLN 92
EP + + +Y L + + +K E + YLN+GQ Y + L G L+
Sbjct: 217 EPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTL-RTPAGGKGLALS 275
Query: 93 TKYVKSIIRVVFHDRRLQYTEHQQLEGWRWSRPG--DRILDI-DIPLSVGILDPRASPTQ 149
+ VKS++ VVF + ++ + + + W +P R++D+ D + ++
Sbjct: 276 SNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVE-HIEEVA 334
Query: 150 LNAVEFLWDPAKRASAFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHL- 208
NA+ F+W+ + A FI V+C+ST+F+ +K G KGVP +QIDT+ + G TE L
Sbjct: 335 YNALSFVWNVNEEAKVFIGVNCLSTDFSSQK--GVKGVPLNLQIDTY---DCGLGTERLV 389
Query: 209 HSASCQIKVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVN 268
H A CQIK+F KGA+RK + D K +R + + + +L+
Sbjct: 390 HRAVCQIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLS------------- 436
Query: 269 SAPSPSYNGSPNSFGLGEGNASPTHPVEALPVGSDHLLPSASIQDAQQWLHRNRFSQFCR 328
+ G+ ++ P +E PV ++ FS R
Sbjct: 437 -----GFRGNETTY------LRPETDLETPPV---------------LFIPNVHFSSLQR 470
Query: 329 LFASFSGADLLKMSRDDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRVPLQQ 388
+ A +R L + C P F + + + E + RV L
Sbjct: 471 SGGAAPSAGPSSSNRLPLKRTCSPF--TEEFEPLPSKQAK---------EGDLQRVLLYV 519
Query: 389 KRDGSGDSNLSVYHAIFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNEM 448
+R+ V+ A+ L+ L I+ Y ++I++VY++ GI V + N +
Sbjct: 520 RRETE-----EVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNI 574
Query: 449 VQNFQDESCFVLSTIKAESNDGYHIILK 476
+Q++ + F+L E + IILK
Sbjct: 575 IQHYSNHVAFLLD--MGELDGKIQIILK 600
>gi|42789723 sister-of-mammalian grainyhead protein isoform 3 [Homo
sapiens]
Length = 509
Score = 103 bits (258), Expect = 3e-22
Identities = 108/448 (24%), Positives = 189/448 (42%), Gaps = 68/448 (15%)
Query: 33 EPQLSPENEARLPPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLN 92
EP + + +Y L + + +K E + YLN+GQ Y + L G L+
Sbjct: 124 EPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTL-RTPAGGKGLALS 182
Query: 93 TKYVKSIIRVVFHDRRLQYTEHQQLEGWRWSRPG--DRILDI-DIPLSVGILDPRASPTQ 149
+ VKS++ VVF + ++ + + + W +P R++D+ D + ++
Sbjct: 183 SNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVE-HIEEVA 241
Query: 150 LNAVEFLWDPAKRASAFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHL- 208
NA+ F+W+ + A FI V+C+ST+F+ +K G KGVP +QIDT+ + G TE L
Sbjct: 242 YNALSFVWNVNEEAKVFIGVNCLSTDFSSQK--GVKGVPLNLQIDTY---DCGLGTERLV 296
Query: 209 HSASCQIKVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVN 268
H A CQIK+F KGA+RK + D K +R + + + +L+
Sbjct: 297 HRAVCQIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLS------------- 343
Query: 269 SAPSPSYNGSPNSFGLGEGNASPTHPVEALPVGSDHLLPSASIQDAQQWLHRNRFSQFCR 328
+ G+ ++ P +E PV ++ FS R
Sbjct: 344 -----GFRGNETTY------LRPETDLETPPV---------------LFIPNVHFSSLQR 377
Query: 329 LFASFSGADLLKMSRDDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRVPLQQ 388
+ A +R L + C P F + + + E + RV L
Sbjct: 378 SGGAAPSAGPSSSNRLPLKRTCSPF--TEEFEPLPSKQAK---------EGDLQRVLLYV 426
Query: 389 KRDGSGDSNLSVYHAIFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNEM 448
+R+ V+ A+ L+ L I+ Y ++I++VY++ GI V + N +
Sbjct: 427 RRETE-----EVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNI 481
Query: 449 VQNFQDESCFVLSTIKAESNDGYHIILK 476
+Q++ + F+L E + IILK
Sbjct: 482 IQHYSNHVAFLLD--MGELDGKIQIILK 507
>gi|38049007 sister-of-mammalian grainyhead protein isoform 1 [Homo
sapiens]
Length = 607
Score = 103 bits (258), Expect = 3e-22
Identities = 108/448 (24%), Positives = 189/448 (42%), Gaps = 68/448 (15%)
Query: 33 EPQLSPENEARLPPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLN 92
EP + + +Y L + + +K E + YLN+GQ Y + L G L+
Sbjct: 222 EPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTL-RTPAGGKGLALS 280
Query: 93 TKYVKSIIRVVFHDRRLQYTEHQQLEGWRWSRPG--DRILDI-DIPLSVGILDPRASPTQ 149
+ VKS++ VVF + ++ + + + W +P R++D+ D + ++
Sbjct: 281 SNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVE-HIEEVA 339
Query: 150 LNAVEFLWDPAKRASAFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHL- 208
NA+ F+W+ + A FI V+C+ST+F+ +K G KGVP +QIDT+ + G TE L
Sbjct: 340 YNALSFVWNVNEEAKVFIGVNCLSTDFSSQK--GVKGVPLNLQIDTY---DCGLGTERLV 394
Query: 209 HSASCQIKVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVN 268
H A CQIK+F KGA+RK + D K +R + + + +L+
Sbjct: 395 HRAVCQIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLS------------- 441
Query: 269 SAPSPSYNGSPNSFGLGEGNASPTHPVEALPVGSDHLLPSASIQDAQQWLHRNRFSQFCR 328
+ G+ ++ P +E PV ++ FS R
Sbjct: 442 -----GFRGNETTY------LRPETDLETPPV---------------LFIPNVHFSSLQR 475
Query: 329 LFASFSGADLLKMSRDDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRVPLQQ 388
+ A +R L + C P F + + + E + RV L
Sbjct: 476 SGGAAPSAGPSSSNRLPLKRTCSPF--TEEFEPLPSKQAK---------EGDLQRVLLYV 524
Query: 389 KRDGSGDSNLSVYHAIFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNEM 448
+R+ V+ A+ L+ L I+ Y ++I++VY++ GI V + N +
Sbjct: 525 RRETE-----EVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNI 579
Query: 449 VQNFQDESCFVLSTIKAESNDGYHIILK 476
+Q++ + F+L E + IILK
Sbjct: 580 IQHYSNHVAFLLD--MGELDGKIQIILK 605
>gi|170784817 transcription factor CP2-like 3 [Homo sapiens]
Length = 625
Score = 100 bits (250), Expect = 2e-21
Identities = 71/196 (36%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 48 QYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDR 107
QY L A S K E +TYLN+GQ Y I L E F+ +K V+S++ VVF +
Sbjct: 249 QYTLEATKSLRQKQGEGPMTYLNKGQFYAITLSETGDNKCFRHPISK-VRSVVMVVFSED 307
Query: 108 RLQYTEHQQLEGWRW-----SRPGDRILDI-DIPLSVGILDPRASPTQLNAVEFLWDPAK 161
+ +QL+ W++ R+LDI D S + NAV F WD +
Sbjct: 308 K---NRDEQLKYWKYWHSRQHTAKQRVLDIADYKESFNTIG-NIEEIAYNAVSFTWDVNE 363
Query: 162 RASAFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPK 221
A FI V+C+ST+F+ +K G KG+P +QIDT+ N + +H A CQIKVF K
Sbjct: 364 EAKIFITVNCLSTDFSSQK--GVKGLPLMIQIDTYSYNNRS--NKPIHRAYCQIKVFCDK 419
Query: 222 GADRKQKTDREKMEKR 237
GA+RK + + K ++
Sbjct: 420 GAERKIRDEERKQNRK 435
>gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo
sapiens]
Length = 1029
Score = 34.7 bits (78), Expect = 0.20
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 220 PKGADRKQKTDREKME------KRTAQEKEKYQPSYETT--------ILTECSPWPDVAY 265
P G + KQ+ ++E+ E KR ++K+K + + + T + P A
Sbjct: 31 PPGEESKQEKEQEREEQLMEDKKRKKEDKKKKEATQKVTEQKTKVPEVTKPSLSQPTAAS 90
Query: 266 QVNSAPSPSYNGSPNSFGLGEGNASPTHPVEALP 299
+ S+PSP NG N+ + N P +P
Sbjct: 91 PIGSSPSPPVNGGNNAKRVAVPNGQPPSAARYMP 124
>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
sapiens]
Length = 1723
Score = 33.1 bits (74), Expect = 0.57
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 219 KPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGS 278
K K D+K+K +K+ ++ + E +PS P A + S+PSP NG
Sbjct: 17 KRKKEDKKKKEATQKVTEQKTKVPEVTKPSLSQ---------PTAASPIGSSPSPPVNGG 67
Query: 279 PNSFGLGEGNASPTHPVEALP 299
N+ + N P +P
Sbjct: 68 NNAKRVAVPNGQPPSAARYMP 88
>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
sapiens]
Length = 1833
Score = 33.1 bits (74), Expect = 0.57
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 219 KPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGS 278
K K D+K+K +K+ ++ + E +PS P A + S+PSP NG
Sbjct: 17 KRKKEDKKKKEATQKVTEQKTKVPEVTKPSLSQ---------PTAASPIGSSPSPPVNGG 67
Query: 279 PNSFGLGEGNASPTHPVEALP 299
N+ + N P +P
Sbjct: 68 NNAKRVAVPNGQPPSAARYMP 88
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 32.7 bits (73), Expect = 0.75
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 220 PKGADRKQKTDREKMEKRTAQEK-----EKYQPSYETTILTECSPWPDVAYQVNSAPSP 273
P+G DR +K D EK + T +EK + P+ +C W + ++NS P P
Sbjct: 978 PRGNDRYRKNDPEKQNENTRKEKNDIHLDADDPNSADKHRNDCPNW--ITEKINSGPDP 1034
>gi|93277096 limbin [Homo sapiens]
Length = 1308
Score = 32.3 bits (72), Expect = 0.97
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 332 SFSGADLLKMSRDDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQE--LEQNRVPLQQK 389
S S +LLK +D + +C L ++G +R ++ QE Q+ V LQ +
Sbjct: 914 SKSKGELLKKCIEDKIHLCEEQASEDLVEKVRGELLRERVQRMEAQEGGFAQSLVALQFQ 973
Query: 390 RDGSGDSNLSVYHA------IFLEELTTLELIEKIA 419
+ LS Y A + LEEL+ E++ K A
Sbjct: 974 KASRVTETLSAYTALLSIQDLLLEELSASEMLTKSA 1009
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 31.6 bits (70), Expect = 1.7
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 224 DRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPW---PDVAYQVNSAPSPSYNGSPN 280
D K K + E+ME+ +++E+ + YE E P A +A P P
Sbjct: 122 DMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQ 181
Query: 281 SF-GLGE----GNASPTHPVEALPVGSDHLLPSASIQDAQQWLHRNRFSQFCRL 329
+F G G G P A P G+ H+ P D W + +F Q L
Sbjct: 182 AFRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQLYEL 235
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 31.6 bits (70), Expect = 1.7
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 219 KPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGS 278
K K +K+K ++EK KR +E E S++ + S D + +S PS
Sbjct: 113 KHKNKKKKKKKEKEKKYKRQPEESESKTKSHDDGNIDLES---DSFLKFDSEPSAVALEL 169
Query: 279 P-NSFGLGEGNASPT----HPVEALPVGSDHLL 306
P +FG E N SP PV ++ V H+L
Sbjct: 170 PTRAFGPSETNESPAVVLEPPVVSMEVSEPHIL 202
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 31.6 bits (70), Expect = 1.7
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 219 KPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGS 278
K K +K+K ++EK KR +E E S++ + S D + +S PS
Sbjct: 113 KHKNKKKKKKKEKEKKYKRQPEESESKTKSHDDGNIDLES---DSFLKFDSEPSAVALEL 169
Query: 279 P-NSFGLGEGNASPT----HPVEALPVGSDHLL 306
P +FG E N SP PV ++ V H+L
Sbjct: 170 PTRAFGPSETNESPAVVLEPPVVSMEVSEPHIL 202
>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
Length = 726
Score = 31.6 bits (70), Expect = 1.7
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 210 SASCQIKVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVNS 269
+A Q V KPK +K+K ++EK +K +EKEK++ E + +P P Q
Sbjct: 478 AALSQAPVNKPK--KKKEKKEKEKKKKDKEKEKEKHKVKAEEEKKAKVAP-PAKQAQQKK 534
Query: 270 APSPSYNGS 278
AP+ N +
Sbjct: 535 APAKKANST 543
>gi|239749961 PREDICTED: hypothetical protein LOC100129826 [Homo
sapiens]
Length = 228
Score = 30.8 bits (68), Expect = 2.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 277 GSPNSFGLGEGNASPTHPVEALPVGSDHLLPSAS 310
GS G + PT + LP GSDH+LP+ S
Sbjct: 66 GSEQVLPTGSEHVLPTGSEQVLPTGSDHVLPTGS 99
Score = 30.0 bits (66), Expect = 4.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 277 GSPNSFGLGEGNASPTHPVEALPVGSDHLLPSASIQ 312
GS + G PT + LP GS+H+LP+ S Q
Sbjct: 50 GSEHVLPTGSEQVLPTGSEQVLPTGSEHVLPTGSEQ 85
>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
Length = 1668
Score = 30.4 bits (67), Expect = 3.7
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 54 ATSPAVKLHEETLTYLN-QGQSYEIRLLENRKLGDFQDLNTK 94
ATS + LH++ L+YL+ G Y + ++R D++D +T+
Sbjct: 808 ATSDDLDLHDDRLSYLSAPGSEYSMYSTDSRHTSDYEDTDTE 849
>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
Length = 1748
Score = 30.4 bits (67), Expect = 3.7
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 54 ATSPAVKLHEETLTYLN-QGQSYEIRLLENRKLGDFQDLNTK 94
ATS + LH++ L+YL+ G Y + ++R D++D +T+
Sbjct: 808 ATSDDLDLHDDRLSYLSAPGSEYSMYSTDSRHTSDYEDTDTE 849
>gi|213688415 coiled-coil domain containing 66 isoform 1 [Homo
sapiens]
Length = 948
Score = 30.4 bits (67), Expect = 3.7
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 206 EHLHSASCQI--KVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTILTE 256
EH + + Q+ K K + + ++K + ++ E R AQE+E+ Q YE IL +
Sbjct: 466 EHQKAITAQVEEKRRKKQLEEEQRKKEEQEEELRLAQEREEMQKQYEEDILKQ 518
>gi|213688413 coiled-coil domain containing 66 isoform 2 [Homo
sapiens]
Length = 914
Score = 30.4 bits (67), Expect = 3.7
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 206 EHLHSASCQI--KVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTILTE 256
EH + + Q+ K K + + ++K + ++ E R AQE+E+ Q YE IL +
Sbjct: 432 EHQKAITAQVEEKRRKKQLEEEQRKKEEQEEELRLAQEREEMQKQYEEDILKQ 484
>gi|219842214 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform b [Homo sapiens]
Length = 943
Score = 30.0 bits (66), Expect = 4.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 224 DRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNS 281
+ K+K ++EK +K +EK++ + S E + S D YQ S S + +P+S
Sbjct: 638 EEKEKEEKEKQDKEKQEEKKESETSREDEYKQKYSRTYDETYQRYRPVSTSSSTTPSS 695
>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 30.0 bits (66), Expect = 4.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 224 DRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNS 281
+ K+K ++EK +K +EK++ + S E + S D YQ S S + +P+S
Sbjct: 725 EEKEKEEKEKQDKEKQEEKKESETSREDEYKQKYSRTYDETYQRYRPVSTSSSTTPSS 782
>gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 30.0 bits (66), Expect = 4.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 224 DRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVNSAPSPSYNGSPNS 281
+ K+K ++EK +K +EK++ + S E + S D YQ S S + +P+S
Sbjct: 725 EEKEKEEKEKQDKEKQEEKKESETSREDEYKQKYSRTYDETYQRYRPVSTSSSTTPSS 782
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 30.0 bits (66), Expect = 4.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 317 WLHRNRFSQFCRLFASFSGADLLKMSR 343
WL R+RF QFC L A G D + +R
Sbjct: 371 WLRRSRFEQFCHLRAIGDGEDEMLFTR 397
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 30.0 bits (66), Expect = 4.8
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 192 QIDTFKQNENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYET 251
Q+ + K +E E+ + ++ + KG + KQ+ RE+ ++ +E+EK ET
Sbjct: 192 QLQSCKGHETEEFPDEEQLRRRELLELRRKGREEKQQQRRERQDRVFQEEEEKEWRKRET 251
Query: 252 TILTE 256
+ E
Sbjct: 252 VLRKE 256
>gi|32698700 PHD finger protein 8 [Homo sapiens]
Length = 1024
Score = 30.0 bits (66), Expect = 4.8
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 20/86 (23%)
Query: 227 QKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQ----VNSAPSP--------- 273
QK ++K K+ KE QP + + L+ P P VA +S+P P
Sbjct: 886 QKAQKKKYIKKKPLLKEVEQPRPQDSNLSLTVPAPTVAATPQLVTSSSPLPPPEPKQEAL 945
Query: 274 -------SYNGSPNSFGLGEGNASPT 292
Y PN+FG+ + N S T
Sbjct: 946 SGSLADHEYTARPNAFGMAQANRSTT 971
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,104,876
Number of Sequences: 37866
Number of extensions: 990891
Number of successful extensions: 3137
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3033
Number of HSP's gapped (non-prelim): 88
length of query: 479
length of database: 18,247,518
effective HSP length: 106
effective length of query: 373
effective length of database: 14,233,722
effective search space: 5309178306
effective search space used: 5309178306
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.