Search of human proteins with 7657293

Search of human proteins with 7657293

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7657293 linker for activation of T cells isoform a [Homo
sapiens]
         (262 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7657293 linker for activation of T cells isoform a [Homo sapi...   541   e-154
gi|239049118 linker for activation of T cells isoform d [Homo sa...   461   e-130
gi|62739155 linker for activation of T cells isoform b [Homo sap...   461   e-130
gi|62739157 linker for activation of T cells isoform c [Homo sap...   455   e-128
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa...    40   0.002
gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens]     40   0.003
gi|239582741 FERM and PDZ domain containing 1 [Homo sapiens]           39   0.004
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f...    39   0.004
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e...    39   0.004
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         37   0.013
gi|156119601 spermatogenesis and oogenesis specific basic helix-...    37   0.023
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d...    36   0.039
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ...    36   0.039
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ...    36   0.039
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]      35   0.051
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]             35   0.066
gi|4505463 contactin associated protein 1 precursor [Homo sapiens]     35   0.066
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ...    35   0.066
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi...    35   0.066
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi...    35   0.066
gi|156119603 spermatogenesis and oogenesis specific basic helix-...    35   0.066
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]            35   0.087
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [...    34   0.11 
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H...    34   0.11 
gi|14602439 Williams Beuren syndrome chromosome region 14 isofor...    34   0.11 
gi|14602437 Williams Beuren syndrome chromosome region 14 isofor...    34   0.11 
gi|14602435 Williams Beuren syndrome chromosome region 14 isofor...    34   0.11 
gi|14602433 Williams Beuren syndrome chromosome region 14 isofor...    34   0.11 
gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo ...    34   0.11 
gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]    34   0.11 

>gi|7657293 linker for activation of T cells isoform a [Homo
           sapiens]
          Length = 262

 Score =  541 bits (1393), Expect = e-154
 Identities = 262/262 (100%), Positives = 262/262 (100%)

Query: 1   MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
           MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW
Sbjct: 1   MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60

Query: 61  PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRG 120
           PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRG
Sbjct: 61  PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRG 120

Query: 121 AQAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 180
           AQAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP
Sbjct: 121 AQAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 180

Query: 181 ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS 240
           ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS
Sbjct: 181 ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS 240

Query: 241 SQEAEEVEEEGAPDYENLQELN 262
           SQEAEEVEEEGAPDYENLQELN
Sbjct: 241 SQEAEEVEEEGAPDYENLQELN 262


>gi|239049118 linker for activation of T cells isoform d [Homo
           sapiens]
          Length = 269

 Score =  461 bits (1187), Expect = e-130
 Identities = 233/262 (88%), Positives = 233/262 (88%), Gaps = 29/262 (11%)

Query: 1   MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
           MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW
Sbjct: 37  MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 96

Query: 61  PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRG 120
           PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENE       
Sbjct: 97  PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENE------- 149

Query: 121 AQAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 180
                                 EPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP
Sbjct: 150 ----------------------EPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 187

Query: 181 ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS 240
           ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS
Sbjct: 188 ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS 247

Query: 241 SQEAEEVEEEGAPDYENLQELN 262
           SQEAEEVEEEGAPDYENLQELN
Sbjct: 248 SQEAEEVEEEGAPDYENLQELN 269


>gi|62739155 linker for activation of T cells isoform b [Homo
           sapiens]
          Length = 233

 Score =  461 bits (1187), Expect = e-130
 Identities = 233/262 (88%), Positives = 233/262 (88%), Gaps = 29/262 (11%)

Query: 1   MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
           MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW
Sbjct: 1   MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60

Query: 61  PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRG 120
           PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENE       
Sbjct: 61  PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENE------- 113

Query: 121 AQAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 180
                                 EPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP
Sbjct: 114 ----------------------EPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 151

Query: 181 ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS 240
           ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS
Sbjct: 152 ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS 211

Query: 241 SQEAEEVEEEGAPDYENLQELN 262
           SQEAEEVEEEGAPDYENLQELN
Sbjct: 212 SQEAEEVEEEGAPDYENLQELN 233


>gi|62739157 linker for activation of T cells isoform c [Homo
           sapiens]
          Length = 232

 Score =  455 bits (1170), Expect = e-128
 Identities = 232/262 (88%), Positives = 232/262 (88%), Gaps = 30/262 (11%)

Query: 1   MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
           MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW
Sbjct: 1   MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60

Query: 61  PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRG 120
           PPAYPPVTSYPPLSQPDLLPIP SPQPLGGSHRTPSSRRDSDGANSVASYENE       
Sbjct: 61  PPAYPPVTSYPPLSQPDLLPIP-SPQPLGGSHRTPSSRRDSDGANSVASYENE------- 112

Query: 121 AQAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 180
                                 EPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP
Sbjct: 113 ----------------------EPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 150

Query: 181 ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS 240
           ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS
Sbjct: 151 ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS 210

Query: 241 SQEAEEVEEEGAPDYENLQELN 262
           SQEAEEVEEEGAPDYENLQELN
Sbjct: 211 SQEAEEVEEEGAPDYENLQELN 232


>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
           sapiens]
          Length = 699

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 25/195 (12%)

Query: 65  PPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRGAQAG 124
           P VT+  P  +P   P     QP+GG  +  + + DS  +   +S   E  +    A   
Sbjct: 391 PAVTTKSPAVKPAAAP----KQPVGGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATT- 445

Query: 125 WGVWGPSWTRLTPVSLPPEPACE---------DADEDEDDYHNPGYLVVLPDSTPATSTA 175
                P  T    +SLP + A +         D+   E++        V          A
Sbjct: 446 ----KPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQKVAGGA 501

Query: 176 APSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTE 235
           APS PA +  G  +S+ S  S D       S E  E  L G       + + +  +A T 
Sbjct: 502 APSKPASAKKGKAESSNSSSSDD-------SSEEEEEKLKGKGSPRPQAPKANGTSALTA 554

Query: 236 PAALSSQEAEEVEEE 250
               +++ +EE EEE
Sbjct: 555 QNGKAAKNSEEEEEE 569



 Score = 28.9 bits (63), Expect = 4.8
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)

Query: 171 ATSTAAPSAPALSTP-GIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHP 229
           AT+ AA S PA   P G RDS+   +S        ++ +SA              Q++  
Sbjct: 449 ATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKP---------QKVAG 499

Query: 230 GAAKTEPAALSSQEAEEVEEEGAPDYENLQE 260
           GAA ++PA+    +AE      + D    +E
Sbjct: 500 GAAPSKPASAKKGKAESSNSSSSDDSSEEEE 530


>gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens]
          Length = 1056

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 13/133 (9%)

Query: 124 GWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHN---PGYLVVLPDSTPATSTAAPSAP 180
           GW   GP W ++T  S       +D DE E  +     P  L   P  +PA+S   PS+P
Sbjct: 398 GWQRGGPFWPQVTLNS-------QDRDEREGGHPQESLPCTLAPCPWRSPASSPE-PSSP 449

Query: 181 ALST--PGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAA 238
              +  PG R S  S +     +    SG   + +LD S+  +  +    P + K + A 
Sbjct: 450 ESESRGPGPRPSPASSQEGSPQLQHHSSGILPKWTLDASQSSLLETDGEQPSSLKKKEAG 509

Query: 239 LSSQEAEEVEEEG 251
            + +  EEV+ EG
Sbjct: 510 EAPKPGEEVKSEG 522


>gi|239582741 FERM and PDZ domain containing 1 [Homo sapiens]
          Length = 1578

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 40/118 (33%), Positives = 49/118 (41%), Gaps = 15/118 (12%)

Query: 76  PDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEG-ASGIRGAQAGWGVWGPSWTR 134
           P+L  +   P+   GSH    S   S    S  S  +E  AS   GA   WG  G  WT 
Sbjct: 687 PELSTVRLDPRLYEGSHADYYSLCSSVSPASYLSDSSESTASRQGGAPPAWGQQG--WTE 744

Query: 135 ------LTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPA----TSTAAPSAPAL 182
                 L P++L P  A ED   DE+ Y     L   P   P+     STA PSA +L
Sbjct: 745 AQPSSMLEPLALHPPLAFEDGSSDEEYYDAADKLT--PPGPPSGPRDVSTAEPSATSL 800


>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
            [Homo sapiens]
          Length = 1412

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 15/144 (10%)

Query: 62   PAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRGA 121
            PA  P ++       + L  P+ P+ +  + + P S  DS+ ++  +S   E   G +GA
Sbjct: 1031 PATSPQSTSVQAKGTNKLRKPKLPE-VQQATKAPESSDDSEDSSDSSSGSEEDGEGPQGA 1089

Query: 122  QAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNP------GYLVVLPDSTPATSTA 175
            ++   + GP+ +R    +L  E A   A+  EDD   P      GY+   P  TPA S A
Sbjct: 1090 KSAHTLVGPTPSRTE--TLVEETA---AESSEDDVVAPSQSLLSGYMT--PGLTPANSQA 1142

Query: 176  APSAPAL-STPGIRDSAFSMESID 198
            + + P L S+P +  +  + +  D
Sbjct: 1143 SKATPKLDSSPSVSSTLAAKDDPD 1166


>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
            [Homo sapiens]
          Length = 1451

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 15/144 (10%)

Query: 62   PAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRGA 121
            PA  P ++       + L  P+ P+ +  + + P S  DS+ ++  +S   E   G +GA
Sbjct: 1070 PATSPQSTSVQAKGTNKLRKPKLPE-VQQATKAPESSDDSEDSSDSSSGSEEDGEGPQGA 1128

Query: 122  QAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNP------GYLVVLPDSTPATSTA 175
            ++   + GP+ +R    +L  E A   A+  EDD   P      GY+   P  TPA S A
Sbjct: 1129 KSAHTLVGPTPSRTE--TLVEETA---AESSEDDVVAPSQSLLSGYMT--PGLTPANSQA 1181

Query: 176  APSAPAL-STPGIRDSAFSMESID 198
            + + P L S+P +  +  + +  D
Sbjct: 1182 SKATPKLDSSPSVSSTLAAKDDPD 1205


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 37.4 bits (85), Expect = 0.013
 Identities = 54/212 (25%), Positives = 82/212 (38%), Gaps = 31/212 (14%)

Query: 54   PHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENE 113
            P   +P PPA+    +  P ++   LP P +          P++R     A +    E  
Sbjct: 2393 PPQPSPAPPAFTSCPAPEPFAE---LPAPATSLAPAPLITMPATRPKPKKARAA---EES 2446

Query: 114  GASGIR--GAQAGW-------GVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVV 164
            GA G R  G +A         GV  P   +     L  E      D     +  P  L+ 
Sbjct: 2447 GAKGPRRPGEEAELLVKLDHEGVTSPKSKKAKEALLLRE------DPGAGGWQEPKSLLS 2500

Query: 165  LPDSTPATSTAAPSAPALSTPGIRDSAFSME-----SIDDYVNVPESGESAEASLDGSRE 219
            L    PA  ++ P AP    P   D   + E     + +D  N P+S + A+A  DG+ E
Sbjct: 2501 LGSYPPAAGSSEPKAP---WPKATDGDLAQEPGPGLTFEDSGN-PKSPDKAQAEQDGAEE 2556

Query: 220  YVNVSQELHPGAAKTEPAALSSQEAEEVEEEG 251
              + S     G++ +  ++ SS    E EEEG
Sbjct: 2557 SES-SSSSSSGSSSSSSSSSSSGSETEGEEEG 2587


>gi|156119601 spermatogenesis and oogenesis specific basic
           helix-loop-helix 1 isoform b [Homo sapiens]
          Length = 328

 Score = 36.6 bits (83), Expect = 0.023
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 22/104 (21%)

Query: 51  FKRPHTVAPWPP------AYPPVTSYPPLSQPDLLPI----------PRSPQPLGGSHRT 94
           F  P ++ PWPP      A  P  S+PP SQ   LP+             P  +G +   
Sbjct: 219 FSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAPLG 278

Query: 95  PSSRRD----SDGANSVASYENEGASGIRGA-QAGW-GVWGPSW 132
             ++ D     +  +++ S  ++G S +  A  + W G WGP +
Sbjct: 279 EPAKEDPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGEWGPGF 322


>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
            [Homo sapiens]
          Length = 1488

 Score = 35.8 bits (81), Expect = 0.039
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 62   PAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRGA 121
            PA  P ++       + L  P+ P+ +  + + P S  DS+ ++  +S   E   G +GA
Sbjct: 1108 PATSPQSTSVQAKGTNKLRKPKLPE-VQQATKAPESSDDSEDSSDSSSGSEEDGEGPQGA 1166

Query: 122  QAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNP------GYLVVLPDSTPATSTA 175
            ++   + GP+ +R    +L  E A   A+  EDD   P      GY+   P  TPA S A
Sbjct: 1167 KSAHTL-GPTPSRTE--TLVEETA---AESSEDDVVAPSQSLLSGYMT--PGLTPANSQA 1218

Query: 176  APSAPAL-STPGIRDSAFSMESID 198
            + + P L S+P +  +  + +  D
Sbjct: 1219 SKATPKLDSSPSVSSTLAAKDDPD 1242


>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
            sapiens]
          Length = 1411

 Score = 35.8 bits (81), Expect = 0.039
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 62   PAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRGA 121
            PA  P ++       + L  P+ P+ +  + + P S  DS+ ++  +S   E   G +GA
Sbjct: 1031 PATSPQSTSVQAKGTNKLRKPKLPE-VQQATKAPESSDDSEDSSDSSSGSEEDGEGPQGA 1089

Query: 122  QAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNP------GYLVVLPDSTPATSTA 175
            ++   + GP+ +R    +L  E A   A+  EDD   P      GY+   P  TPA S A
Sbjct: 1090 KSAHTL-GPTPSRTE--TLVEETA---AESSEDDVVAPSQSLLSGYMT--PGLTPANSQA 1141

Query: 176  APSAPAL-STPGIRDSAFSMESID 198
            + + P L S+P +  +  + +  D
Sbjct: 1142 SKATPKLDSSPSVSSTLAAKDDPD 1165


>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a [Homo
            sapiens]
          Length = 1450

 Score = 35.8 bits (81), Expect = 0.039
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 62   PAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRGA 121
            PA  P ++       + L  P+ P+ +  + + P S  DS+ ++  +S   E   G +GA
Sbjct: 1070 PATSPQSTSVQAKGTNKLRKPKLPE-VQQATKAPESSDDSEDSSDSSSGSEEDGEGPQGA 1128

Query: 122  QAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNP------GYLVVLPDSTPATSTA 175
            ++   + GP+ +R    +L  E A   A+  EDD   P      GY+   P  TPA S A
Sbjct: 1129 KSAHTL-GPTPSRTE--TLVEETA---AESSEDDVVAPSQSLLSGYMT--PGLTPANSQA 1180

Query: 176  APSAPAL-STPGIRDSAFSMESID 198
            + + P L S+P +  +  + +  D
Sbjct: 1181 SKATPKLDSSPSVSSTLAAKDDPD 1204


>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
          Length = 346

 Score = 35.4 bits (80), Expect = 0.051
 Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 15/91 (16%)

Query: 117 GIRGAQAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHN--PGYLVVLPDSTPATST 174
           G RG   GW  +    TR             D D DE++Y+   P    +  D  P    
Sbjct: 32  GGRGGGCGWAPFAGCSTR-------------DGDGDEEEYYGSEPRARGLAGDKEPRAGP 78

Query: 175 AAPSAPALSTPGIRDSAFSMESIDDYVNVPE 205
             P AP L  PG  D+     S+D  +  P+
Sbjct: 79  LPPPAPPLPPPGALDALSLSSSLDSGLRTPQ 109


>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
          Length = 1970

 Score = 35.0 bits (79), Expect = 0.066
 Identities = 43/201 (21%), Positives = 67/201 (33%), Gaps = 15/201 (7%)

Query: 58   APWPPAYPPVT-SYPPLSQPDLLPIPRSPQPLGGSHR--TPSSRRDSDGANSVASYENEG 114
            +P  P+Y P + SY P S P   P   S  P   S+   +PS    S   +  +      
Sbjct: 1700 SPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPT 1758

Query: 115  ASGIRGAQAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPATST 174
            +         +    P++T  +P   P  P+            +P Y    P  TP + T
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT-SPSYSPSSPRYTPQSPT 1817

Query: 175  AAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKT 234
              PS+P+ S      S  S          P+   ++ +    S EY   S +  P + K 
Sbjct: 1818 YTPSSPSYSPSSPSYSPTS----------PKYTPTSPSYSPSSPEYTPTSPKYSPTSPKY 1867

Query: 235  EPAALSSQEAEEVEEEGAPDY 255
             P +              P Y
Sbjct: 1868 SPTSPKYSPTSPTYSPTTPKY 1888



 Score = 33.1 bits (74), Expect = 0.25
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 58   APWPPAYPPVT-SYPPLSQPDLLPIPRSPQPLGGSHR--TPSSRRDSDGANSVASYENEG 114
            +P  P+Y P + SY P S P   P   S  P   S+   +PS    S   +  +   +  
Sbjct: 1644 SPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1702

Query: 115  ASGIRGAQAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPATST 174
            +         +    PS++  +P   P  P+            +P Y    P+ TP + +
Sbjct: 1703 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPNYSPTSPNYTPTSPS 1761

Query: 175  AAPSAPALS 183
             +P++P+ S
Sbjct: 1762 YSPTSPSYS 1770



 Score = 32.0 bits (71), Expect = 0.56
 Identities = 37/198 (18%), Positives = 63/198 (31%), Gaps = 7/198 (3%)

Query: 61   PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHR---TPSSRRDSDGANSVASYENEGASG 117
            P A    + + P   P   P P SP   G S     +P        + +  +YE     G
Sbjct: 1548 PSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGG 1607

Query: 118  IRGAQAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAP 177
                   +    PS++  +P   P  P             +P Y    P  +P + + +P
Sbjct: 1608 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSP 1666

Query: 178  SAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPA 237
            ++P+ S       ++S  S       P    ++ +    S  Y   S    P +    P 
Sbjct: 1667 TSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1723

Query: 238  ALSSQEAEEVEEEGAPDY 255
            + S           +P Y
Sbjct: 1724 SPSYSPTSPSYSPTSPSY 1741



 Score = 28.9 bits (63), Expect = 4.8
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 119  RGAQAGWGVWGPS-WTRLTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAP 177
            +GA   +G W PS  + +TP +    P+   A  D   + +PGY      +  +  +  P
Sbjct: 1522 QGATPAYGAWSPSVGSGMTPGAAGFSPS---AASDASGF-SPGYSPAWSPTPGSPGSPGP 1577

Query: 178  SAPALSTPG 186
            S+P + +PG
Sbjct: 1578 SSPYIPSPG 1586


>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
          Length = 1384

 Score = 35.0 bits (79), Expect = 0.066
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 4    AILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWP-- 61
            AIL+  ++  LLL ++ ML+   +  HR  GSY +       P+      P +  P P  
Sbjct: 1283 AILLGFLVAFLLLGLVGMLVLFYLQNHRYKGSYHTNE-----PKAAHEYHPGSKPPLPTS 1337

Query: 62   -PAYPPVTSYPPLSQPDLLPIPR-SPQPLGG 90
             PA  P  +  P   P   P P  +P P  G
Sbjct: 1338 GPAQVPTPTAAPNQAPASAPAPAPTPAPAPG 1368


>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
            sapiens]
          Length = 5537

 Score = 35.0 bits (79), Expect = 0.066
 Identities = 49/201 (24%), Positives = 67/201 (33%), Gaps = 45/201 (22%)

Query: 61   PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRG 120
            P   PP    PPLS       P +  PLG       ++ DSD  + +A+   E       
Sbjct: 927  PQLMPPDPLPPPLSPIITAAAPPALSPLGELEYPFGAKGDSDPESPLAAPILE------- 979

Query: 121  AQAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDST-----PATSTA 175
                           TP+S PPE  C D +        P   ++LP S      PA+   
Sbjct: 980  ---------------TPISPPPEANCTDPE--------PVPPMILPPSPGSPVGPASPIL 1016

Query: 176  APSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTE 235
                P   +P ++ S     S     + P    S  + L    + V VS E         
Sbjct: 1017 MEPLPPQCSPLLQHSLVPQNSPPSQCSPPALPLSVPSPLSPIGKVVGVSDE--------- 1067

Query: 236  PAALSSQEAEEVEEEGAPDYE 256
             A L   E E+V E   P  E
Sbjct: 1068 -AELHEMETEKVSEPECPALE 1087



 Score = 29.6 bits (65), Expect = 2.8
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 57   VAPWPPAYP----PVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYEN 112
            +AP PP++P    P +   P +QP L P P+ P P       P S      +   AS ++
Sbjct: 2358 LAPSPPSHPDIFRPGSYTDPYAQPPLTPRPQPPPPESCCALPPRSLPSDPFSRVPASPQS 2417

Query: 113  EGAS 116
            + +S
Sbjct: 2418 QSSS 2421


>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
           sapiens]
          Length = 678

 Score = 35.0 bits (79), Expect = 0.066
 Identities = 47/159 (29%), Positives = 61/159 (38%), Gaps = 28/159 (17%)

Query: 54  PHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRR----DSDGANSVAS 109
           P    P PP  PP    PP + P     P +P P GG   +P +RR       G+NS   
Sbjct: 91  PERARPPPPPPPPAPPRPPPAAPSP---PAAPGPRGGG-ASPGARRSDFLQKTGSNSFTV 146

Query: 110 YE---NEGASG---IRGAQAGWGVWGPSWTRLT---PVSLPPEPACEDADEDEDDYHNPG 160
           +    + GA       G  A     GP+  RL    P S   +P  E  D       +PG
Sbjct: 147 HPRGLHRGAGARLLSNGHSAPEPRAGPA-NRLAGSPPGSGQWKPKVESGDPSLHPPPSPG 205

Query: 161 YLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDD 199
                P +TPA      S PA +TP  R    +  S +D
Sbjct: 206 ----TPSATPA------SPPASATPSQRQCVSAATSTND 234


>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
           sapiens]
          Length = 650

 Score = 35.0 bits (79), Expect = 0.066
 Identities = 47/159 (29%), Positives = 61/159 (38%), Gaps = 28/159 (17%)

Query: 54  PHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRR----DSDGANSVAS 109
           P    P PP  PP    PP + P     P +P P GG   +P +RR       G+NS   
Sbjct: 91  PERARPPPPPPPPAPPRPPPAAPSP---PAAPGPRGGG-ASPGARRSDFLQKTGSNSFTV 146

Query: 110 YE---NEGASG---IRGAQAGWGVWGPSWTRLT---PVSLPPEPACEDADEDEDDYHNPG 160
           +    + GA       G  A     GP+  RL    P S   +P  E  D       +PG
Sbjct: 147 HPRGLHRGAGARLLSNGHSAPEPRAGPA-NRLAGSPPGSGQWKPKVESGDPSLHPPPSPG 205

Query: 161 YLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDD 199
                P +TPA      S PA +TP  R    +  S +D
Sbjct: 206 ----TPSATPA------SPPASATPSQRQCVSAATSTND 234


>gi|156119603 spermatogenesis and oogenesis specific basic
           helix-loop-helix 1 isoform a [Homo sapiens]
          Length = 387

 Score = 35.0 bits (79), Expect = 0.066
 Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 28/110 (25%)

Query: 51  FKRPHTVAPWPP------AYPPVTSYPPLSQPDLLPI----------PRSPQPLGGSHRT 94
           F  P ++ PWPP      A  P  S+PP SQ   LP+             P  +G +   
Sbjct: 219 FSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAPLG 278

Query: 95  PSSRRD------------SDGANSVASYENEGASGIRGAQAGWGVWGPSW 132
             ++ D            SD  +  +     G S   G+  G G  GP+W
Sbjct: 279 EPAKEDPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGSLEGRGGSGPAW 328


>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 370

 Score = 34.7 bits (78), Expect = 0.087
 Identities = 31/117 (26%), Positives = 39/117 (33%), Gaps = 5/117 (4%)

Query: 80  PIPRSPQPLGGSHRTPSSRRDS---DGANSVASYENEGASGIRGAQAG--WGVWGPSWTR 134
           P  R P  L  +H  P+S       D A +        A   RG       G+W    TR
Sbjct: 129 PPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTR 188

Query: 135 LTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSA 191
           L P+ L P P                  + LP  +PA     P+ PA  TP     A
Sbjct: 189 LRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPA 245



 Score = 29.6 bits (65), Expect = 2.8
 Identities = 41/170 (24%), Positives = 53/170 (31%), Gaps = 32/170 (18%)

Query: 31  RLPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYP-------PLSQPDLLPIPR 83
           RLP       +  L+  G    RP  + P P   P +   P        LS P   P P 
Sbjct: 168 RLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPC 227

Query: 84  SPQPLGGSHRTPS--SRRDSDGANSVASYENEGASGIRGAQAGWGVWGPSWTRLTPVSLP 141
            P P   + RTPS  S   +    ++A       +  RG   G                 
Sbjct: 228 LPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEG----------------D 271

Query: 142 PEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSA 191
           P P      E+ED        +    S PA     PS     +PG R  A
Sbjct: 272 PGPIVGGRPENEDS-------LASQTSPPAPPAPVPSTARARSPGARRGA 314


>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
           [Homo sapiens]
          Length = 828

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 37/157 (23%), Positives = 56/157 (35%), Gaps = 22/157 (14%)

Query: 33  PGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSH 92
           P + D  S    Y R +    P    P   ++ PV+  P       +P P SPQP G   
Sbjct: 317 PLASDRRSDAGSYRRSLGSAGPSGTLP--RSWQPVSRIP-------MP-PSSPQPRGAPR 366

Query: 93  RTPSSRRDSDGANSVASYENEGASGIRGAQAGWGVWGPSWTRLTPVSLPPEPACEDADED 152
           + P              ++ + A    GA        P +TR  P  L P+P  +   + 
Sbjct: 367 QRPIPLS--------MIFKLQNAFWEHGASRAMLPGSPLFTRAPPPKLQPQPQPQPQPQS 418

Query: 153 EDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRD 189
           +     P      P + P T T AP  P  + P + +
Sbjct: 419 QPQPQLPPQ----PQTQPQTPTPAPQHPQQTWPPVNE 451


>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
           sapiens]
          Length = 828

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 37/157 (23%), Positives = 56/157 (35%), Gaps = 22/157 (14%)

Query: 33  PGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSH 92
           P + D  S    Y R +    P    P   ++ PV+  P       +P P SPQP G   
Sbjct: 317 PLASDRRSDAGSYRRSLGSAGPSGTLP--RSWQPVSRIP-------MP-PSSPQPRGAPR 366

Query: 93  RTPSSRRDSDGANSVASYENEGASGIRGAQAGWGVWGPSWTRLTPVSLPPEPACEDADED 152
           + P              ++ + A    GA        P +TR  P  L P+P  +   + 
Sbjct: 367 QRPIPLS--------MIFKLQNAFWEHGASRAMLPGSPLFTRAPPPKLQPQPQPQPQPQS 418

Query: 153 EDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRD 189
           +     P      P + P T T AP  P  + P + +
Sbjct: 419 QPQPQLPPQ----PQTQPQTPTPAPQHPQQTWPPVNE 451


>gi|14602439 Williams Beuren syndrome chromosome region 14 isoform
           delta [Homo sapiens]
          Length = 831

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 33  PGSYDST---SSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQ-PDLLPIPRSPQP 87
           PG  DS+   SSD L P       P    P PP  PP+  YPP ++ P L P P  P P
Sbjct: 363 PGPLDSSAFLSSDFLLPED-----PKPRLPPPPVPPPLLHYPPPAKVPGLEPCPPPPFP 416


>gi|14602437 Williams Beuren syndrome chromosome region 14 isoform
           gamma [Homo sapiens]
          Length = 850

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 33  PGSYDST---SSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQ-PDLLPIPRSPQP 87
           PG  DS+   SSD L P       P    P PP  PP+  YPP ++ P L P P  P P
Sbjct: 363 PGPLDSSAFLSSDFLLPED-----PKPRLPPPPVPPPLLHYPPPAKVPGLEPCPPPPFP 416


>gi|14602435 Williams Beuren syndrome chromosome region 14 isoform
           beta [Homo sapiens]
          Length = 833

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 33  PGSYDST---SSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQ-PDLLPIPRSPQP 87
           PG  DS+   SSD L P       P    P PP  PP+  YPP ++ P L P P  P P
Sbjct: 363 PGPLDSSAFLSSDFLLPED-----PKPRLPPPPVPPPLLHYPPPAKVPGLEPCPPPPFP 416


>gi|14602433 Williams Beuren syndrome chromosome region 14 isoform
           alpha [Homo sapiens]
          Length = 852

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 33  PGSYDST---SSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQ-PDLLPIPRSPQP 87
           PG  DS+   SSD L P       P    P PP  PP+  YPP ++ P L P P  P P
Sbjct: 363 PGPLDSSAFLSSDFLLPED-----PKPRLPPPPVPPPLLHYPPPAKVPGLEPCPPPPFP 416


>gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo
           sapiens]
          Length = 225

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 33  PGSYDST-----SSDSLYPRGIQFKRPHTVAPWP--------PAYPPVTSYPPLSQPDLL 79
           PGS DS      S DS+ P     + P +V P P        P   P +  PP   PD +
Sbjct: 82  PGSPDSVVLPPRSPDSVVPPP---RSPDSVVPPPGSPDSVVLPPRSPDSVVPPPGSPDSV 138

Query: 80  PIP-RSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRGAQAGWG 126
            +P RSP  +    R+P S   +    S+A      A G  G    WG
Sbjct: 139 VLPPRSPDSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWG 186



 Score = 31.2 bits (69), Expect = 0.96
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 33  PGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSH 92
           PGS DS     L PR      P +V P PP  P     PP S   ++P PRSP  +    
Sbjct: 62  PGSPDSVV---LPPRS-----PDSVVP-PPGSPDSVVLPPRSPDSVVPPPRSPDSVVPPP 112

Query: 93  RTPSS 97
            +P S
Sbjct: 113 GSPDS 117



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 33 PGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSH 92
          PGS DS    S        + P +V P PP  P     PP S   ++P P SP  +    
Sbjct: 42 PGSPDSVVLPS--------RSPDSVVP-PPGSPDSVVLPPRSPDSVVPPPGSPDSVVLPP 92

Query: 93 RTPSS 97
          R+P S
Sbjct: 93 RSPDS 97


>gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]
          Length = 861

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 13/184 (7%)

Query: 68  TSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGI-RGAQAGWG 126
           T Y     PD    P      G S ++ +S       +++A  ++    G+ + + A   
Sbjct: 138 TFYSSPRSPDRTLSPARTTSSGVSEKSTTSHSRPGPTHTIAFPDSTTMPGVSQESTASHS 197

Query: 127 VWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVV--LPDSTPATSTAAPSAPALST 184
           + G + T L+P +  P        E    + +PGY     LPD+T  +     S P  S+
Sbjct: 198 IPGSTDTTLSPGTTTPSSL---GPESTTFHSSPGYTKTTRLPDNTTTSGLLEASTPVHSS 254

Query: 185 PGIRDSAFSMESIDDYVNVPESGESAEASLDGS-------REYVNVSQELHPGAAKTEPA 237
            G   +  S  S   +   P + +S  +S D S         +V +S   H   + T   
Sbjct: 255 TGSPHTTLSPSSSTTHEGEPTTFQSWPSSKDTSPAPSGTTSAFVKLSTTYHSSPSSTPTT 314

Query: 238 ALSS 241
             S+
Sbjct: 315 HFSA 318


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.130    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,963,261
Number of Sequences: 37866
Number of extensions: 755430
Number of successful extensions: 4839
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 4360
Number of HSP's gapped (non-prelim): 677
length of query: 262
length of database: 18,247,518
effective HSP length: 100
effective length of query: 162
effective length of database: 14,460,918
effective search space: 2342668716
effective search space used: 2342668716
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.