Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 7657202
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657202 cardiovascular heat shock protein [Homo sapiens]
(170 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657202 cardiovascular heat shock protein [Homo sapiens] 339 8e-94
gi|4504519 heat shock 27kDa protein 2 [Homo sapiens] 58 4e-09
gi|7657146 heat shock 22kDa protein 8 [Homo sapiens] 57 1e-08
gi|4504517 heat shock protein beta-1 [Homo sapiens] 54 5e-08
gi|4503057 crystallin, alpha B [Homo sapiens] 54 6e-08
gi|21389433 heat shock protein, alpha-crystallin-related, B6 [Ho... 54 6e-08
gi|4503055 crystallin, alpha A [Homo sapiens] 46 1e-05
gi|5453688 heat shock 27kDa protein 3 [Homo sapiens] 40 0.001
gi|15082238 heat shock protein, alpha-crystallin-related, B9 [Ho... 37 0.011
gi|110349788 absent, small, or homeotic 1-like [Homo sapiens] 35 0.041
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.041
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 34 0.053
gi|55741677 SET domain containing 1A [Homo sapiens] 34 0.069
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 34 0.069
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 34 0.069
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 34 0.069
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 33 0.15
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 33 0.15
gi|153792110 HEG homolog 1 [Homo sapiens] 33 0.15
gi|4505379 nuclear factor erythroid 2-like 1 [Homo sapiens] 32 0.20
gi|209862859 DEP domain containing 5 isoform 3 [Homo sapiens] 32 0.26
gi|55749924 DEP domain containing 5 isoform 2 [Homo sapiens] 32 0.26
gi|7662222 DEP domain containing 5 isoform 1 [Homo sapiens] 32 0.26
gi|238624132 large conductance calcium-activated potassium chann... 31 0.45
gi|238624130 large conductance calcium-activated potassium chann... 31 0.45
gi|62388890 large conductance calcium-activated potassium channe... 31 0.45
gi|26638650 large conductance calcium-activated potassium channe... 31 0.45
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 31 0.59
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora... 31 0.59
gi|58219064 Src homology 2 domain containing E [Homo sapiens] 31 0.59
>gi|7657202 cardiovascular heat shock protein [Homo sapiens]
Length = 170
Score = 339 bits (869), Expect = 8e-94
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MSHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHS 60
MSHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHS
Sbjct: 1 MSHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHS 60
Query: 61 EPLAFPARPGGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRAEKLAADGTVMN 120
EPLAFPARPGGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRAEKLAADGTVMN
Sbjct: 61 EPLAFPARPGGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRAEKLAADGTVMN 120
Query: 121 TFAHKCQLPEDVDPTSVTSALREDGSLTIRARRHPHTEHVQQTFRTEIKI 170
TFAHKCQLPEDVDPTSVTSALREDGSLTIRARRHPHTEHVQQTFRTEIKI
Sbjct: 121 TFAHKCQLPEDVDPTSVTSALREDGSLTIRARRHPHTEHVQQTFRTEIKI 170
>gi|4504519 heat shock 27kDa protein 2 [Homo sapiens]
Length = 182
Score = 57.8 bits (138), Expect = 4e-09
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 53 GSFMRPHSEPLAFPARPGGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRA--- 109
G ++RP + P +R GA ++ ++ +DV F+P+++ V T +N +EV A
Sbjct: 46 GYYVRPRAAPAGEGSR-AGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHP 104
Query: 110 EKLAADGTVMNTFAHKCQLPEDVDPTSVTSALREDGSLTI---RARRHPHTE 158
++L G V F LP DVDP V +AL DG L + R RH TE
Sbjct: 105 QRLDRHGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTE 156
>gi|7657146 heat shock 22kDa protein 8 [Homo sapiens]
Length = 196
Score = 56.6 bits (135), Expect = 1e-08
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 79 GDAYEFAVDVRDFSPEDIIVTTSNNHIEVRA---EKLAADGTVMNTFAHKCQLPEDVDPT 135
G+ ++ V+V F PE+++V T + ++EV EK G V F K QLP +VDP
Sbjct: 93 GEPWKVCVNVHSFKPEELMVKTKDGYVEVSGKHEEKQQEGGIVSKNFTKKIQLPAEVDPV 152
Query: 136 SVTSALREDGSLTIRARR-HPHTEHVQQTFRTEI 168
+V ++L +G L I A + P++ + +F E+
Sbjct: 153 TVFASLSPEGLLIIEAPQVPPYSTFGESSFNNEL 186
>gi|4504517 heat shock protein beta-1 [Homo sapiens]
Length = 205
Score = 54.3 bits (129), Expect = 5e-08
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 71 GAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRA---EKLAADGTVMNTFAHKCQ 127
G I+ D + ++DV F+P+++ V T + +E+ E+ G + F K
Sbjct: 84 GVSEIRHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHEERQDEHGYISRCFTRKYT 143
Query: 128 LPEDVDPTSVTSALREDGSLTIRA 151
LP VDPT V+S+L +G+LT+ A
Sbjct: 144 LPPGVDPTQVSSSLSPEGTLTVEA 167
>gi|4503057 crystallin, alpha B [Homo sapiens]
Length = 175
Score = 53.9 bits (128), Expect = 6e-08
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 40 PMEKALSMFSDDFGSFMRPHSEPLAFPARPGGAGNIKTLGDAYEFAVDVRDFSPEDIIVT 99
P +LS F ++RP S A G ++ D + +DV+ FSPE++ V
Sbjct: 39 PTSTSLSPF------YLRPPSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVK 92
Query: 100 TSNNHIEVRA---EKLAADGTVMNTFAHKCQLPEDVDPTSVTSALREDGSLTIRARR 153
+ IEV E+ G + F K ++P DVDP ++TS+L DG LT+ R
Sbjct: 93 VLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 149
>gi|21389433 heat shock protein, alpha-crystallin-related, B6 [Homo
sapiens]
Length = 160
Score = 53.9 bits (128), Expect = 6e-08
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 82 YEFAVDVRDFSPEDIIVTTSNNHIEVRA---EKLAADGTVMNTFAHKCQLPEDVDPTSVT 138
+ +DV+ FSPE+I V H+EV A E+ G V F + +LP VDP +VT
Sbjct: 74 FSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVT 133
Query: 139 SALREDGSLTIRA 151
SAL +G L+I+A
Sbjct: 134 SALSPEGVLSIQA 146
>gi|4503055 crystallin, alpha A [Homo sapiens]
Length = 173
Score = 46.2 bits (108), Expect = 1e-05
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 71 GAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRA---EKLAADGTVMNTFAHKCQ 127
G +++ D + +DV+ FSPED+ V ++ +E+ E+ G + F + +
Sbjct: 60 GISEVRSDRDKFVIFLDVKHFSPEDLTVKVQDDFVEIHGKHNERQDDHGYISREFHRRYR 119
Query: 128 LPEDVDPTSVTSALREDGSLT 148
LP +VD ++++ +L DG LT
Sbjct: 120 LPSNVDQSALSCSLSADGMLT 140
>gi|5453688 heat shock 27kDa protein 3 [Homo sapiens]
Length = 150
Score = 39.7 bits (91), Expect = 0.001
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 82 YEFAVDVRDFSPEDIIVTTSNNHIEVRAE---KLAADGTVMNTFAHKCQLPEDVDPTSVT 138
++ +DV F PEDII+ T + ++A+ ++ G + +F + +LP+ V+ ++
Sbjct: 71 FQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGVEIKDLS 130
Query: 139 SALREDGSLTIRAR 152
+ L DG L + +
Sbjct: 131 AVLCHDGILVVEVK 144
>gi|15082238 heat shock protein, alpha-crystallin-related, B9 [Homo
sapiens]
Length = 159
Score = 36.6 bits (83), Expect = 0.011
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 80 DAYEFAVDVRDFSPEDIIV--------TTSNNHIEVRAEKLAADGTVMNTFAHKCQLPED 131
D ++ +D F+PE+++V T ++VR + + M+ H+ LP +
Sbjct: 52 DGFQMKLDAHGFAPEELVVQVDGQWLMVTGQQQLDVRDPERVSYR--MSQKVHRKMLPSN 109
Query: 132 VDPTSVTSALREDGSLTIRAR 152
+ PT++T L G L +R +
Sbjct: 110 LSPTAMTCCLTPSGQLWVRGQ 130
>gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]
Length = 2964
Score = 34.7 bits (78), Expect = 0.041
Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 16/155 (10%)
Query: 17 SSSSSSSSSTSSSASRALPAQDP---------PMEKALSMFSDDFGSFMRPHSEPLAFPA 67
S +S S SS A P+ P M + L+M G R S P P
Sbjct: 1112 SGTSGGQSPVSSDAGFVEPSSVPYLHLHSRQGSMIQTLAMKKASKGR--RRLSPPTLLPN 1169
Query: 68 RPGGAGNIKTLGDAYEFAVDVR---DFSPEDIIVTTSNNHIEVRAEKLAADGTVMNTFAH 124
P + +L +A + + P D + T NN RAEK ++F H
Sbjct: 1170 SPSHLSELTSLKEATPSPISESHSDETIPSDSGIGTDNNSTSDRAEKFCGQKKRRHSFEH 1229
Query: 125 KCQLPEDVDPTSVTSALREDGSLTIRARRHPHTEH 159
+P + ++V S+L+E + R H + +
Sbjct: 1230 VSLIPPET--STVLSSLKEKHKHKCKRRNHDYLSY 1262
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.7 bits (78), Expect = 0.041
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 10 RAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSEPLAFPARP 69
R+ S SSSSSSSSS+SSS+S + + + S S S +P + L PA P
Sbjct: 2606 RSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASP 2665
Score = 34.7 bits (78), Expect = 0.041
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKAL 45
S +SS+ + S SSSSSSSSS+SSS+S + P+ P +AL
Sbjct: 2616 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQAL 2659
Score = 31.6 bits (70), Expect = 0.34
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 11 AERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSEPLAFPARPG 70
A+R SSSSSSSSS+SSS+S + + + S S S S PA+PG
Sbjct: 2601 AKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SSSSPSPAKPG 2655
Score = 31.6 bits (70), Expect = 0.34
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEK 43
S +SS+ + S SSSSSSSSS+SSS+S + + P K
Sbjct: 2612 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAK 2653
Score = 30.8 bits (68), Expect = 0.59
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPP 40
S +SS+ + S SSSSSSSSS+SSS+S + + P
Sbjct: 2611 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSP 2649
Score = 30.0 bits (66), Expect = 1.0
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 4 RTSSTFRAERSFHSSSSSSSSSTSSSAS 31
R+SS+ + S SSSSSSSSS+SSS S
Sbjct: 2531 RSSSSSSSSSSSSSSSSSSSSSSSSSGS 2558
Score = 30.0 bits (66), Expect = 1.0
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQ 37
S +SS+ + S SSSSSS SS+S S +LP Q
Sbjct: 2536 SSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQ 2571
Score = 28.1 bits (61), Expect = 3.8
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 10 RAERSFHSSSSSSSSSTSSSAS 31
+ RS SSSSSSSSS+SSS+S
Sbjct: 2528 KERRSSSSSSSSSSSSSSSSSS 2549
Score = 28.1 bits (61), Expect = 3.8
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 4 RTSSTFRAERSFHSSSSSSSSSTSSSA 30
R SS+ + S SSSSSSSSS+SSS+
Sbjct: 2530 RRSSSSSSSSSSSSSSSSSSSSSSSSS 2556
Score = 28.1 bits (61), Expect = 3.8
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 5 TSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSM 47
+SS+ + S SSSSSSSSS+S S+S P++ +++
Sbjct: 2534 SSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVAL 2576
Score = 26.9 bits (58), Expect = 8.5
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 10 RAERSFHSSSSSSSSSTSSSAS 31
R S SSSSSSSSS+SSS+S
Sbjct: 2530 RRSSSSSSSSSSSSSSSSSSSS 2551
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 34.3 bits (77), Expect = 0.053
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 7 STFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPH 59
S + S SSSSSSSSS+SSS+S + + + S S SF +PH
Sbjct: 145 SIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPH 197
Score = 31.6 bits (70), Expect = 0.34
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSE 61
S +SS+ + S SSSSSSSSS+SSS+S + K + + R H
Sbjct: 157 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKS 216
Query: 62 PLAFPAR 68
P+R
Sbjct: 217 AFKEPSR 223
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 33.9 bits (76), Expect = 0.069
Identities = 32/90 (35%), Positives = 40/90 (44%), Gaps = 20/90 (22%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSAS-----------RALPAQDPPMEKA------ 44
S SS+ + S SSSSSSSSS+SSS S ALP+ PP +
Sbjct: 1031 SDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAALPSASPPPREVPVPTPA 1090
Query: 45 ---LSMFSDDFGSFMRPHSEPLAFPARPGG 71
+ + GS + P E A PARP G
Sbjct: 1091 PVEVPVPERVAGSPVTPLPEQEASPARPAG 1120
Score = 27.3 bits (59), Expect = 6.5
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 5 TSSTFRAERSFHSSSSSSSSSTSSSASR 32
T++T + S S SSSSSSS+SSS+S+
Sbjct: 331 TAATASSSASSSSLSSSSSSSSSSSSSQ 358
Score = 27.3 bits (59), Expect = 6.5
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 11 AERSFHSSSSSSSSSTSSSASRALPAQDP 39
A S SSSSSSSSS+SSS R+ A P
Sbjct: 339 ASSSSLSSSSSSSSSSSSSQFRSSDANYP 367
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.9 bits (76), Expect = 0.069
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSE 61
S +SS+ + S SSSSSSSSS+SSS+S + + ++ S SDD + P +
Sbjct: 2634 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAA-PAPTAG 2692
Query: 62 PLAFPARP 69
P A A P
Sbjct: 2693 PSAQAALP 2700
Score = 31.6 bits (70), Expect = 0.34
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSE 61
S +SS+ + S SSSSSSSSS+SSS+S + + + S +D+ S S+
Sbjct: 2626 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSC---SSD 2682
Query: 62 PLAFPARPGG 71
A PA G
Sbjct: 2683 DEAAPAPTAG 2692
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGS 54
S R +S + S SSSSSSSSS+SSS+S + + + S S S
Sbjct: 2606 SSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2658
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGS 54
S +SS+ + S SSSSSSSSS+SSS+S + + + S S S
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2666
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGS 54
S +SS+ + S SSSSSSSSS+SSS+S + + + S S S
Sbjct: 2615 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2667
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGS 54
S +SS+ + S SSSSSSSSS+SSS+S + + + S S S
Sbjct: 2616 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2668
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGS 54
S +SS+ + S SSSSSSSSS+SSS+S + + + S S S
Sbjct: 2617 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2669
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGS 54
S +SS+ + S SSSSSSSSS+SSS+S + + + S S S
Sbjct: 2618 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGS 54
S +SS+ + S SSSSSSSSS+SSS+S + + + S S S
Sbjct: 2619 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2671
Score = 29.3 bits (64), Expect = 1.7
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGS 54
S +SS+ + S SSSSSSSSS+SSS+S + + + S S S
Sbjct: 2611 SPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2663
Score = 27.7 bits (60), Expect = 5.0
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 5 TSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGS 54
++++ RA SSSSSSSSS+SSS+S + + + S S S
Sbjct: 2603 SAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2652
Score = 27.3 bits (59), Expect = 6.5
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 11 AERSFHSSSSSSSSSTSSSAS 31
AE S SSSSSS SS+SSS+S
Sbjct: 2554 AEESESSSSSSSGSSSSSSSS 2574
Score = 27.3 bits (59), Expect = 6.5
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGS 54
S S + S SSSSSSSSS+SSS+S + + + S S S
Sbjct: 2607 SRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2659
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 33.9 bits (76), Expect = 0.069
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKAL-----SMFSDDFGSFM 56
S +SS+ + S S+SSSSSSS+SS + PA PP L + FSD
Sbjct: 85 SSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGVPAAAFSDVLNFI- 143
Query: 57 RPHSEPLAFPARPGGAGNIKTLG 79
+S LA P G + +G
Sbjct: 144 --YSARLALPGGGGDGAAVAEIG 164
Score = 32.0 bits (71), Expect = 0.26
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 6 SSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPP 40
++T A S SSSSSSSSS+S+S+S + + PP
Sbjct: 79 ATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPP 113
Score = 32.0 bits (71), Expect = 0.26
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 6 SSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPP 40
+S+ + S SSSSSS+SS+SSS+S + P PP
Sbjct: 84 ASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPP 118
Score = 30.4 bits (67), Expect = 0.77
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 6 SSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPP 40
++T + S SSSSSSSSS++SS+S + + PP
Sbjct: 80 TTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPP 114
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 33.9 bits (76), Expect = 0.069
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKAL-----SMFSDDFGSFM 56
S +SS+ + S S+SSSSSSS+SS + PA PP L + FSD
Sbjct: 85 SSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGVPAAAFSDVLNFI- 143
Query: 57 RPHSEPLAFPARPGGAGNIKTLG 79
+S LA P G + +G
Sbjct: 144 --YSARLALPGGGGDGAAVAEIG 164
Score = 32.0 bits (71), Expect = 0.26
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 6 SSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPP 40
++T A S SSSSSSSSS+S+S+S + + PP
Sbjct: 79 ATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPP 113
Score = 32.0 bits (71), Expect = 0.26
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 6 SSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPP 40
+S+ + S SSSSSS+SS+SSS+S + P PP
Sbjct: 84 ASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPP 118
Score = 30.4 bits (67), Expect = 0.77
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 6 SSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPP 40
++T + S SSSSSSSSS++SS+S + + PP
Sbjct: 80 TTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPP 114
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 32.7 bits (73), Expect = 0.15
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 14 SFHSSSSSSSSSTSSSASRALPAQDPPMEKA 44
S SSSSSSSSS+SSS+S DPP+ A
Sbjct: 99 SSSSSSSSSSSSSSSSSSSQAKKPDPPLPPA 129
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 32.7 bits (73), Expect = 0.15
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 14 SFHSSSSSSSSSTSSSASRALPAQDPPMEKA 44
S SSSSSSSSS+SSS+S DPP+ A
Sbjct: 99 SSSSSSSSSSSSSSSSSSSQAKKPDPPLPPA 129
>gi|153792110 HEG homolog 1 [Homo sapiens]
Length = 1381
Score = 32.7 bits (73), Expect = 0.15
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 5 TSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFS 49
TS + F S SSSSSSS+SSS+S P P + ++ +FS
Sbjct: 645 TSVVLDTDAEFVSDSSSSSSSSSSSSSSGPPLPLPSVSQSHHLFS 689
>gi|4505379 nuclear factor erythroid 2-like 1 [Homo sapiens]
Length = 772
Score = 32.3 bits (72), Expect = 0.20
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSE 61
SH SS +E S SSSSSSSSS+S+S+S A S FS++ SE
Sbjct: 484 SHSPSSLSSSEGSSSSSSSSSSSSSSASSS------------ASSSFSEEGAVGYSSDSE 531
Query: 62 PLAFPARPGGAG 73
L G G
Sbjct: 532 TLDLEEAEGAVG 543
>gi|209862859 DEP domain containing 5 isoform 3 [Homo sapiens]
Length = 1594
Score = 32.0 bits (71), Expect = 0.26
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 STFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDD 51
+T R+ R S S S+SS S+S +LP++ P E+ S SDD
Sbjct: 479 TTCRSVRERESHSRKSASSCDVSSSPSLPSRTLPTEEVRSQASDD 523
>gi|55749924 DEP domain containing 5 isoform 2 [Homo sapiens]
Length = 559
Score = 32.0 bits (71), Expect = 0.26
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 STFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDD 51
+T R+ R S S S+SS S+S +LP++ P E+ S SDD
Sbjct: 479 TTCRSVRERESHSRKSASSCDVSSSPSLPSRTLPTEEVRSQASDD 523
>gi|7662222 DEP domain containing 5 isoform 1 [Homo sapiens]
Length = 1572
Score = 32.0 bits (71), Expect = 0.26
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 7 STFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDD 51
+T R+ R S S S+SS S+S +LP++ P E+ S SDD
Sbjct: 479 TTCRSVRERESHSRKSASSCDVSSSPSLPSRTLPTEEVRSQASDD 523
>gi|238624132 large conductance calcium-activated potassium
channel subfamily M alpha member 1 isoform d [Homo
sapiens]
Length = 1219
Score = 31.2 bits (69), Expect = 0.45
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 2 SHRTSSTFRA-----ERSFHSSSSSSSSSTSSSASRALPAQDPPME 42
S R SS A + S SSSSSSSSS+SSS+S + +P M+
Sbjct: 22 SLRMSSNIHANHLSLDASSSSSSSSSSSSSSSSSSSSSSVHEPKMD 67
Score = 27.3 bits (59), Expect = 6.5
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 17 SSSSSSSSSTSSSASRALPAQDPPMEKAL 45
SSSSSSSSS+SSS+S + + P AL
Sbjct: 41 SSSSSSSSSSSSSSSSSSSSVHEPKMDAL 69
>gi|238624130 large conductance calcium-activated potassium
channel subfamily M alpha member 1 isoform c [Homo
sapiens]
Length = 1236
Score = 31.2 bits (69), Expect = 0.45
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 2 SHRTSSTFRA-----ERSFHSSSSSSSSSTSSSASRALPAQDPPME 42
S R SS A + S SSSSSSSSS+SSS+S + +P M+
Sbjct: 22 SLRMSSNIHANHLSLDASSSSSSSSSSSSSSSSSSSSSSVHEPKMD 67
Score = 27.3 bits (59), Expect = 6.5
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 17 SSSSSSSSSTSSSASRALPAQDPPMEKAL 45
SSSSSSSSS+SSS+S + + P AL
Sbjct: 41 SSSSSSSSSSSSSSSSSSSSVHEPKMDAL 69
>gi|62388890 large conductance calcium-activated potassium channel
subfamily M alpha member 1 isoform a [Homo sapiens]
Length = 1182
Score = 31.2 bits (69), Expect = 0.45
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 2 SHRTSSTFRA-----ERSFHSSSSSSSSSTSSSASRALPAQDPPME 42
S R SS A + S SSSSSSSSS+SSS+S + +P M+
Sbjct: 22 SLRMSSNIHANHLSLDASSSSSSSSSSSSSSSSSSSSSSVHEPKMD 67
Score = 27.3 bits (59), Expect = 6.5
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 17 SSSSSSSSSTSSSASRALPAQDPPMEKAL 45
SSSSSSSSS+SSS+S + + P AL
Sbjct: 41 SSSSSSSSSSSSSSSSSSSSVHEPKMDAL 69
>gi|26638650 large conductance calcium-activated potassium channel
subfamily M alpha member 1 isoform b [Homo sapiens]
Length = 1178
Score = 31.2 bits (69), Expect = 0.45
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 2 SHRTSSTFRA-----ERSFHSSSSSSSSSTSSSASRALPAQDPPME 42
S R SS A + S SSSSSSSSS+SSS+S + +P M+
Sbjct: 22 SLRMSSNIHANHLSLDASSSSSSSSSSSSSSSSSSSSSSVHEPKMD 67
Score = 27.3 bits (59), Expect = 6.5
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 17 SSSSSSSSSTSSSASRALPAQDPPMEKAL 45
SSSSSSSSS+SSS+S + + P AL
Sbjct: 41 SSSSSSSSSSSSSSSSSSSSVHEPKMDAL 69
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 30.8 bits (68), Expect = 0.59
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 10 RAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKA 44
R S SSSSSSSSS+SSS+SR+ P ++
Sbjct: 1478 RCSSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRS 1512
Score = 30.4 bits (67), Expect = 0.77
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 6 SSTFRAERSFHSSSSSSSSSTSSSAS 31
SS+ R+ R SSSSSSSSS+SSS+S
Sbjct: 1471 SSSGRSRRCSSSSSSSSSSSSSSSSS 1496
Score = 28.5 bits (62), Expect = 2.9
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 4 RTSSTFRAERSFHSSSSSSSSSTSSSAS 31
R SS + RS SSSSSSSS+SSS+S
Sbjct: 1466 RRSSCSSSGRSRRCSSSSSSSSSSSSSS 1493
Score = 27.7 bits (60), Expect = 5.0
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 2 SHRTSSTFRAERSFHSSSSSSSSSTSSSAS 31
S R SS+ + S SSSSSSSSS S S S
Sbjct: 1476 SRRCSSSSSSSSSSSSSSSSSSSSRSRSRS 1505
Score = 27.3 bits (59), Expect = 6.5
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 4 RTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEK 43
R+ S+ S SSSSSSSSS+S S SR+L PP ++
Sbjct: 1428 RSVSSGSNRTSEASSSSSSSSSSSRSRSRSL---SPPHKR 1464
>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 6 [Homo sapiens]
Length = 1093
Score = 30.8 bits (68), Expect = 0.59
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 1 MSHRTS--STFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMF--SDDFGSFM 56
+SH+ S+ + SF S+SSSSSSS+SSS P + A+S S DF +F
Sbjct: 308 LSHKGKKLSSGKGVSSFTSASSSSSSSSSSSGG--------PFQPAVSSLQSSPDFSAFP 359
Query: 57 R---PHSEPLAFP------ARPGGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEV 107
+ P + + P A P + D +E V F P TT+++
Sbjct: 360 KLEQPEEDKYSKPTAPAPSAPPSPSAPEPPKADLFEQKVVFSGFGPIMRFSTTTSSSGRA 419
Query: 108 RA 109
RA
Sbjct: 420 RA 421
>gi|58219064 Src homology 2 domain containing E [Homo sapiens]
Length = 495
Score = 30.8 bits (68), Expect = 0.59
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 13 RSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSEP 62
+S + SSSSSSSS+SSSAS + + P ++K + + + +++P
Sbjct: 158 KSNYPSSSSSSSSSSSSASSSPSSLGPELDKGKIIKQQETVIILEDYADP 207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.125 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,566,216
Number of Sequences: 37866
Number of extensions: 283445
Number of successful extensions: 3441
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1992
Number of HSP's gapped (non-prelim): 766
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.