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Search of human proteins with 7657180
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657180 VENT homeobox [Homo sapiens]
(258 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657180 VENT homeobox [Homo sapiens] 533 e-152
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 86 4e-17
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 85 7e-17
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 84 9e-17
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 80 2e-15
gi|226437602 NK1 homeobox 2 [Homo sapiens] 75 4e-14
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 75 4e-14
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 75 4e-14
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 75 4e-14
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 74 1e-13
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] 74 1e-13
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 74 1e-13
gi|84570137 homeobox B3 [Homo sapiens] 72 4e-13
gi|7110735 ventral anterior homeobox 2 [Homo sapiens] 70 1e-12
gi|4504465 homeobox B2 [Homo sapiens] 70 1e-12
gi|4885185 distal-less homeobox 3 [Homo sapiens] 69 5e-12
gi|70608170 H6 family homeobox 2 [Homo sapiens] 69 5e-12
gi|19923352 NK3 homeobox 1 [Homo sapiens] 69 5e-12
gi|24497538 homeobox C4 [Homo sapiens] 68 9e-12
gi|24497540 homeobox C4 [Homo sapiens] 68 9e-12
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 68 9e-12
gi|4503615 even-skipped homeobox 1 [Homo sapiens] 67 1e-11
gi|147901462 brain specific homeobox [Homo sapiens] 67 1e-11
gi|94536800 empty spiracles homolog 1 [Homo sapiens] 67 1e-11
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 67 2e-11
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 67 2e-11
gi|33457326 GS homeobox 1 [Homo sapiens] 67 2e-11
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 66 3e-11
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 66 3e-11
gi|18959212 GS homeobox 2 [Homo sapiens] 66 3e-11
>gi|7657180 VENT homeobox [Homo sapiens]
Length = 258
Score = 533 bits (1374), Expect = e-152
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MRLSSSPPRGPQQLSSFGSVDWLSQSSCSGPTHTPRPADFSLGSLPGPGQTSGAREPPQA 60
MRLSSSPPRGPQQLSSFGSVDWLSQSSCSGPTHTPRPADFSLGSLPGPGQTSGAREPPQA
Sbjct: 1 MRLSSSPPRGPQQLSSFGSVDWLSQSSCSGPTHTPRPADFSLGSLPGPGQTSGAREPPQA 60
Query: 61 VSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLE 120
VSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLE
Sbjct: 61 VSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLE 120
Query: 121 RKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGL 180
RKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGL
Sbjct: 121 RKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGL 180
Query: 181 QLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPPTPGRPSLGPA 240
QLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPPTPGRPSLGPA
Sbjct: 181 QLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPPTPGRPSLGPA 240
Query: 241 LSTGPRGLCAMPQTGDAF 258
LSTGPRGLCAMPQTGDAF
Sbjct: 241 LSTGPRGLCAMPQTGDAF 258
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 85.5 bits (210), Expect = 4e-17
Identities = 65/200 (32%), Positives = 86/200 (43%), Gaps = 11/200 (5%)
Query: 9 RGPQQLSSFGSVDWLSQSSCSGPTHTPRP--ADFSLGSLPGPGQTSG-AREPPQAVSIKE 65
RG ++ G S C G T A + PGP + S A+ PP +
Sbjct: 171 RGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPG 230
Query: 66 AAGSS-----NLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLE 120
AG++ P+R G + R R RTAFT EQ+ LE F+ +YLS E
Sbjct: 231 GAGTTPQGTATAAKPKRKRTGSDSKSGKPR--RARTAFTYEQLVALENKFKATRYLSVCE 288
Query: 121 RKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGL 180
R LA + L+E Q+K WFQNRR K K+Q +P G P +GL GL
Sbjct: 289 RLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGG-GGPGPGAGPGTGLPGGL 347
Query: 181 QLLCPWAPLSGPQALMLPPG 200
L P P+ P + P G
Sbjct: 348 SPLSPSPPMGAPLGMHGPAG 367
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 84.7 bits (208), Expect = 7e-17
Identities = 57/170 (33%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Query: 31 PTHTPRPADFSLGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLR 90
P+ RP S PG GA P A + + ++ P +RT + + +
Sbjct: 41 PSTRQRPPGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRT----GSDSKSGK 96
Query: 91 APRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQM 150
R RTAFT EQ+ LE F+ +YLS ER LA + L+E Q+K WFQNRR K K+Q
Sbjct: 97 PRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 156
Query: 151 QDPQLHSPFSGSLHAPPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPG 200
+P G P +GL GL L P P+ P + P G
Sbjct: 157 PGADTSAPTGGG-GGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAG 205
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 84.3 bits (207), Expect = 9e-17
Identities = 65/200 (32%), Positives = 85/200 (42%), Gaps = 11/200 (5%)
Query: 9 RGPQQLSSFGSVDWLSQSSCSGPTHTPRP--ADFSLGSLPGPGQTSG-AREPPQAVSIKE 65
RG ++ G S C G T A + PGP + S A PP +
Sbjct: 574 RGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAPGPPGGAAAPG 633
Query: 66 AAGSS-----NLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLE 120
AG++ P+R G + R R RTAFT EQ+ LE F+ +YLS E
Sbjct: 634 GAGTTPQGTATAAKPKRKRTGSDSKSGKPR--RARTAFTYEQLVALENKFKATRYLSVCE 691
Query: 121 RKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGL 180
R LA + L+E Q+K WFQNRR K K+Q +P G P +GL GL
Sbjct: 692 RLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGG-GGPGPGAGPGTGLPGGL 750
Query: 181 QLLCPWAPLSGPQALMLPPG 200
L P P+ P + P G
Sbjct: 751 SPLSPSPPMGAPLGMHGPAG 770
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 79.7 bits (195), Expect = 2e-15
Identities = 67/177 (37%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 90 RAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKR- 148
R R RT+FT EQ+ LE FQ QY+ ER LAR++ LSE Q+K WFQNRR K K+
Sbjct: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 158
Query: 149 QMQDPQLHSPFS--------------GSLHAPPAFYSTSSGLANGLQLLCPWAPLSGPQA 194
Q +D +L S S G L +PP + A G + L GP
Sbjct: 159 QGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATG----ALGSALRGPSL 214
Query: 195 LMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPP-TPGRPSLGPALSTGPRGLCA 250
L G+ G A A A+ G + P HPP G P GPA GP GL A
Sbjct: 215 PALGAGAAAG--SAAAAAAAAPGPAGAASP---HPPAVGGAPGPGPA---GPGGLHA 263
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 75.5 bits (184), Expect = 4e-14
Identities = 62/182 (34%), Positives = 79/182 (43%), Gaps = 18/182 (9%)
Query: 63 IKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERK 122
++ GS P P R EPN + R RTAFT EQ+ LE F+ +YLS ER
Sbjct: 139 VRSPPGSPGSPRPRRRRL----EPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERL 194
Query: 123 RLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGLQL 182
LA + L+E Q+K WFQNRR K K+Q + G P A G + G
Sbjct: 195 NLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGG--- 251
Query: 183 LCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPL-ASHPPTPGRPSLGPAL 241
P P +G P A L + AS PL A+ P +P P LGP+
Sbjct: 252 -SPGPPGTGALHFQTFPS------YSAANVLFPSAASF---PLTAAAPGSPFAPFLGPSY 301
Query: 242 ST 243
T
Sbjct: 302 LT 303
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 75.5 bits (184), Expect = 4e-14
Identities = 62/182 (34%), Positives = 79/182 (43%), Gaps = 18/182 (9%)
Query: 63 IKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERK 122
++ GS P P R EPN + R RTAFT EQ+ LE F+ +YLS ER
Sbjct: 161 VRSPPGSPGSPRPRRRRL----EPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERL 216
Query: 123 RLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGLQL 182
LA + L+E Q+K WFQNRR K K+Q + G P A G + G
Sbjct: 217 NLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGG--- 273
Query: 183 LCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPL-ASHPPTPGRPSLGPAL 241
P P +G P A L + AS PL A+ P +P P LGP+
Sbjct: 274 -SPGPPGTGALHFQTFPS------YSAANVLFPSAASF---PLTAAAPGSPFAPFLGPSY 323
Query: 242 ST 243
T
Sbjct: 324 LT 325
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 75.5 bits (184), Expect = 4e-14
Identities = 62/182 (34%), Positives = 79/182 (43%), Gaps = 18/182 (9%)
Query: 63 IKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERK 122
++ GS P P R EPN + R RTAFT EQ+ LE F+ +YLS ER
Sbjct: 161 VRSPPGSPGSPRPRRRRL----EPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERL 216
Query: 123 RLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGLQL 182
LA + L+E Q+K WFQNRR K K+Q + G P A G + G
Sbjct: 217 NLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGG--- 273
Query: 183 LCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPL-ASHPPTPGRPSLGPAL 241
P P +G P A L + AS PL A+ P +P P LGP+
Sbjct: 274 -SPGPPGTGALHFQTFPS------YSAANVLFPSAASF---PLTAAAPGSPFAPFLGPSY 323
Query: 242 ST 243
T
Sbjct: 324 LT 325
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 75.5 bits (184), Expect = 4e-14
Identities = 62/182 (34%), Positives = 79/182 (43%), Gaps = 18/182 (9%)
Query: 63 IKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERK 122
++ GS P P R EPN + R RTAFT EQ+ LE F+ +YLS ER
Sbjct: 161 VRSPPGSPGSPRPRRRRL----EPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERL 216
Query: 123 RLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGLQL 182
LA + L+E Q+K WFQNRR K K+Q + G P A G + G
Sbjct: 217 NLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGG--- 273
Query: 183 LCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPL-ASHPPTPGRPSLGPAL 241
P P +G P A L + AS PL A+ P +P P LGP+
Sbjct: 274 -SPGPPGTGALHFQTFPS------YSAANVLFPSAASF---PLTAAAPGSPFAPFLGPSY 323
Query: 242 ST 243
T
Sbjct: 324 LT 325
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 73.9 bits (180), Expect = 1e-13
Identities = 50/139 (35%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 10 GPQQLSSFGSVDWLSQSSCSGPTHTPRPADFSLGSLPGPGQTSGAREPPQAVSIKEAAGS 69
GP +L S V + SS T T G+ PG G + A + K + G
Sbjct: 116 GPPELGSSPPVLCSNSSSLGSSTPT--------GAACAPGDY-GRQALSPAEAEKRSGGK 166
Query: 70 SNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQ 129
+ + E N+ + + RTAFT EQ+R LE F HH YL+ L R +A +
Sbjct: 167 RKSDSSDSQEGNYKSEVNS-KPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLD 225
Query: 130 LSEVQIKTWFQNRRMKHKR 148
L+E Q+K WFQNRRMK KR
Sbjct: 226 LTERQVKVWFQNRRMKWKR 244
>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
Length = 139
Score = 73.9 bits (180), Expect = 1e-13
Identities = 50/131 (38%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 47 GPGQTSG-----AREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTME 101
GPG G A E + S + S N K + +A + RTAFT E
Sbjct: 14 GPGDDYGVLGSTANETEKKSSRRRKESSDN-------QENRGKPEGSSKARKERTAFTKE 66
Query: 102 QVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKR----QMQDPQLHS 157
Q+R LE F HH YL+ L R +A + LSE Q+K WFQNRRMK KR Q P
Sbjct: 67 QLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQD 126
Query: 158 PFSGSLHAPPA 168
P G A P+
Sbjct: 127 PEDGDSTASPS 137
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 73.9 bits (180), Expect = 1e-13
Identities = 50/131 (38%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 47 GPGQTSG-----AREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTME 101
GPG G A E + S + S N K + +A + RTAFT E
Sbjct: 129 GPGDDYGVLGSTANETEKKSSRRRKESSDN-------QENRGKPEGSSKARKERTAFTKE 181
Query: 102 QVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKR----QMQDPQLHS 157
Q+R LE F HH YL+ L R +A + LSE Q+K WFQNRRMK KR Q P
Sbjct: 182 QLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQD 241
Query: 158 PFSGSLHAPPA 168
P G A P+
Sbjct: 242 PEDGDSTASPS 252
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 72.4 bits (176), Expect = 4e-13
Identities = 52/154 (33%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 81 GLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQ 140
G P + + R RTA+T Q+ LE F ++YL R +A + LSE QIK WFQ
Sbjct: 178 GDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQ 237
Query: 141 NRRMKHKRQMQDPQLHSPFSGSLHA--PPAFYSTSSGLANGLQLLCPWAPLSGPQALMLP 198
NRRMK+K+ + L S G A PP +++G N L + P P A
Sbjct: 238 NRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKA 297
Query: 199 PGSFWGLCQVAQEALASAGASCCGQPLASHPPTP 232
+ + L Q L CG P +PPTP
Sbjct: 298 HQNAYALPSNYQPPLKG-----CGAP-QKYPPTP 325
>gi|7110735 ventral anterior homeobox 2 [Homo sapiens]
Length = 290
Score = 70.5 bits (171), Expect = 1e-12
Identities = 58/164 (35%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 26 SSCSGPTHTPRPADFSLGSLPGPGQTSGAREPPQAVSIKEAAGS-SNLPAPERTMAGLSK 84
+S S P + S G PGPG+ R + +++A G+ + P+ GL
Sbjct: 49 TSASSPAGSRESGADSDGQ-PGPGEADHCRR----ILVRDAKGTIREIVLPK----GLDL 99
Query: 85 EPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRM 144
+ R R RT+FT EQ+ LE FQ QY+ ER LAR++ LSE Q+K WFQNRR
Sbjct: 100 D----RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRT 155
Query: 145 KHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGLQLLCPWAP 188
K K+ Q L S S A + L G L P AP
Sbjct: 156 KQKKD-QSRDLEKRASSSASEAFATSNILRLLEQGRLLSVPRAP 198
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 70.5 bits (171), Expect = 1e-12
Identities = 69/231 (29%), Positives = 91/231 (39%), Gaps = 61/231 (26%)
Query: 31 PTHTPRPADFSLGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLR 90
P P PA P + A++P Q+ + A S+ +PA +G+ + L
Sbjct: 81 PPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASA-VPA-----SGVGSPADGLG 134
Query: 91 AP--------RVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNR 142
P R+RTA+T Q+ LE F ++YL R +A + L+E Q+K WFQNR
Sbjct: 135 LPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNR 194
Query: 143 RMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSF 202
RMKHKRQ Q H P P PG+
Sbjct: 195 RMKHKRQTQ------------HREP------------------------PDGEPACPGAL 218
Query: 203 WGLCQVAQEALASAG---ASCCGQPLASHPP--TPGRPSLGPALSTGPRGL 248
+C A+E AS G AS HPP PG ALS PR L
Sbjct: 219 EDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPG------ALSADPRPL 263
>gi|4885185 distal-less homeobox 3 [Homo sapiens]
Length = 287
Score = 68.6 bits (166), Expect = 5e-12
Identities = 61/215 (28%), Positives = 88/215 (40%), Gaps = 22/215 (10%)
Query: 40 FSLGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNT---------LR 90
F+L L G G S E S ++ P P + + +EP +
Sbjct: 69 FNLNGLAGTGAYSPKSEYTYGASYRQYGAYREQPLPAQDPVSVKEEPEAEVRMVNGKPKK 128
Query: 91 APRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQM 150
+ RT ++ Q+ L+ FQ QYL+ ER LA ++ L++ Q+K WFQNRR K K+
Sbjct: 129 VRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLY 188
Query: 151 QD---PQLHSPFSGSLHA-----PPAFYSTSSGL--ANGLQLLCPWAPLSGPQALMLPPG 200
++ P HSP + A PA + TSS A L P P S + + P
Sbjct: 189 KNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPPPLPYSASPSYLDDPT 248
Query: 201 SFWGLCQVAQEALASAGASCCGQPLASHPPTPGRP 235
+ W AQ QP H +PG P
Sbjct: 249 NSW---YHAQNLSGPHLQQQPPQPATLHHASPGPP 280
>gi|70608170 H6 family homeobox 2 [Homo sapiens]
Length = 273
Score = 68.6 bits (166), Expect = 5e-12
Identities = 51/133 (38%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 30 GPTHTPRPADFSLGSLPGPGQTSGA---REP---PQAVSIKEA------AGSSNLPAPER 77
GP H P LG+ G G + R P P KE AGS + P ER
Sbjct: 77 GPKHHPPIPFPCLGTPKGSGGSGPGGLERTPFLSPSHSDFKEEKERLLPAGSPS-PGSER 135
Query: 78 TMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKT 137
G ++ + RT F+ QV LE F +YLS ER LA +QL+E Q+KT
Sbjct: 136 PRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKT 195
Query: 138 WFQNRRMKHKRQM 150
WFQNRR K KRQ+
Sbjct: 196 WFQNRRNKWKRQL 208
>gi|19923352 NK3 homeobox 1 [Homo sapiens]
Length = 234
Score = 68.6 bits (166), Expect = 5e-12
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 57 PPQAVSIKEAAGSSNLPA----PERTMAGLSKEPNTLRAP--RVRTAFTMEQVRTLEGVF 110
P +A ++ E +L + E T L + P T + P R R AF+ QV LE F
Sbjct: 84 PEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKF 143
Query: 111 QHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQL 155
H +YLS ER LA+ ++L+E Q+K WFQNRR K KR+ +L
Sbjct: 144 SHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSEL 188
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 67.8 bits (164), Expect = 9e-12
Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 42/186 (22%)
Query: 31 PTHTPRPA----DFSLGSLPGPGQT-------SGAREPPQAVSIKEAAGSSNL------- 72
P PRP+ +S SL GPG + +G P ++ S+ E A S
Sbjct: 54 PPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPA 113
Query: 73 ------PAPERTMAGLSKEP------------------NTLRAPRVRTAFTMEQVRTLEG 108
PAP+ + SK+P N R RTA+T +QV LE
Sbjct: 114 PPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEK 173
Query: 109 VFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPA 168
F +++YL+ R +A + LSE QIK WFQNRRMK K+ + P + A P+
Sbjct: 174 EFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPS 233
Query: 169 FYSTSS 174
S ++
Sbjct: 234 TLSAAT 239
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 67.8 bits (164), Expect = 9e-12
Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 42/186 (22%)
Query: 31 PTHTPRPA----DFSLGSLPGPGQT-------SGAREPPQAVSIKEAAGSSNL------- 72
P PRP+ +S SL GPG + +G P ++ S+ E A S
Sbjct: 54 PPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPA 113
Query: 73 ------PAPERTMAGLSKEP------------------NTLRAPRVRTAFTMEQVRTLEG 108
PAP+ + SK+P N R RTA+T +QV LE
Sbjct: 114 PPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEK 173
Query: 109 VFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPA 168
F +++YL+ R +A + LSE QIK WFQNRRMK K+ + P + A P+
Sbjct: 174 EFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPS 233
Query: 169 FYSTSS 174
S ++
Sbjct: 234 TLSAAT 239
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 67.8 bits (164), Expect = 9e-12
Identities = 56/162 (34%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 46 PGPGQTS------GAREPPQAVSIKEAAGSSNLPAPE-RTMAGLSKEPNTLRAPRVRTAF 98
PGPG AR P A +EA+ + +PA T G+ R + RT F
Sbjct: 155 PGPGAVQREAAELAARGP--AAGTEEASELAEVPAAAGETRGGVGVGGG--RKKKTRTVF 210
Query: 99 TMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQ----MQDPQ 154
+ QV LE F +YLS ER LA +QL+E Q+K WFQNRR K KRQ ++
Sbjct: 211 SRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAAS 270
Query: 155 LHSPFSGSLHAPPAFYSTSSGLANGLQLLCPWAPLSGPQALM 196
L P + L P Y S P A +GP A +
Sbjct: 271 LSPPGAQRLVRVPVLYHESP----------PAAAAAGPPATL 302
>gi|4503615 even-skipped homeobox 1 [Homo sapiens]
Length = 407
Score = 67.4 bits (163), Expect = 1e-11
Identities = 62/186 (33%), Positives = 76/186 (40%), Gaps = 34/186 (18%)
Query: 93 RVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQD 152
R RTAFT EQ+ LE F Y+S R LA + L E IK WFQNRRMK KRQ
Sbjct: 185 RYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 244
Query: 153 PQLHSPFSGSLHAPPAFYS---TSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVA 209
P A PAFY+ + + A GL P P L LP S GL +
Sbjct: 245 MTWPHP------ADPAFYTYMMSHAAAAGGL-------PYPFPSHLPLPYYSPVGLGAAS 291
Query: 210 QEALASAGASCCGQPLAS------------------HPPTPGRPSLGPALSTGPRGLCAM 251
+ A++ S +PL + HPP P+ G S G C
Sbjct: 292 AASAAASPFSGSLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLGASAGGPCSCLA 351
Query: 252 PQTGDA 257
+G A
Sbjct: 352 CHSGPA 357
>gi|147901462 brain specific homeobox [Homo sapiens]
Length = 233
Score = 67.4 bits (163), Expect = 1e-11
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 90 RAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQ 149
R + RT F+ Q+ LE F+ +YLS ER LA + LSE Q+KTWFQNRRMKHK+Q
Sbjct: 109 RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ 168
Query: 150 MQDPQ 154
++ Q
Sbjct: 169 LRKSQ 173
>gi|94536800 empty spiracles homolog 1 [Homo sapiens]
Length = 290
Score = 67.4 bits (163), Expect = 1e-11
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 86 PNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMK 145
P + R+RTAF+ Q+ LE F+ + Y+ ERK+LA + LSE Q+K WFQNRR K
Sbjct: 187 PFARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTK 246
Query: 146 HKRQM---QDPQLHSPFSGSLH 164
+KRQ + P+ GS H
Sbjct: 247 YKRQKLEEEGPESEQKKKGSHH 268
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 67.0 bits (162), Expect = 2e-11
Identities = 80/247 (32%), Positives = 97/247 (39%), Gaps = 31/247 (12%)
Query: 30 GPTHTPRPADFSLGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPA-PERTMAGLSKEPNT 88
G +P PA P P A P EA S LP P A LS+E
Sbjct: 80 GSEPSPPPA-------PAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSEEEQP 132
Query: 89 LRAPRV-RTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHK 147
+ R RT FT Q+ LE F+ Y R+ LA ++ L EV+++ WFQNRR K +
Sbjct: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWR 192
Query: 148 RQ---------MQDPQL----HSPFSGSLHAPPAFYSTSSGLANGLQLLCPW--APLSGP 192
RQ +QD L SP S +L A + G A G L W PL G
Sbjct: 193 RQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPGG 252
Query: 193 QALMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPPT-PGRPSLGPALSTGPRGLCAM 251
A L S G AQ AS P + PP PG L P + P G
Sbjct: 253 GATALQ--SLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPCG---- 306
Query: 252 PQTGDAF 258
P GD F
Sbjct: 307 PGFGDKF 313
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 67.0 bits (162), Expect = 2e-11
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 81 GLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQ 140
G S++P + + R F+ QV LE F+ +YLS ER+ LA +QL+ Q+K WFQ
Sbjct: 40 GRSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQ 99
Query: 141 NRRMKHKRQMQDPQL 155
NRR K KRQ QD L
Sbjct: 100 NRRYKCKRQRQDKSL 114
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 66.6 bits (161), Expect = 2e-11
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 53 GAREPPQAVSIKEAAGSSNLPAPE-RTMAGLSKEPNTLRAP---RVRTAFTMEQVRTLEG 108
G P A + A ++ P P+ R +S + ++ + P R+RTAFT Q+ LE
Sbjct: 105 GVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELER 164
Query: 109 VFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQ 149
F + YLS L R +A + LSE Q+K WFQNRR+KHK++
Sbjct: 165 EFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 205
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 66.2 bits (160), Expect = 3e-11
Identities = 55/171 (32%), Positives = 77/171 (45%), Gaps = 11/171 (6%)
Query: 76 ERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQI 135
E+T A ++ P R + R F+ QV LE F+ +YLS ER +LA ++L+ Q+
Sbjct: 123 EKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQV 182
Query: 136 KTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLA-NGLQLLCPWAPLSGPQA 194
K WFQNRR K KRQ QD L PPA L +G L AP +
Sbjct: 183 KIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPAYG 242
Query: 195 LMLPPGSFWGLCQVAQEALASAGASCCG---QPLASHP--PTPGRPSLGPA 240
+ L P + A A G + C A++P P+P +P+ A
Sbjct: 243 VGLNPYGY-----NAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPATAAA 288
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 66.2 bits (160), Expect = 3e-11
Identities = 38/83 (45%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 85 EPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRM 144
+P + R PRV F+ QV LE F+ +YLS ER+ LA ++L+ Q+K WFQNRR
Sbjct: 144 KPRSRRKPRV--LFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRY 201
Query: 145 KHKRQMQDPQLHSPFSGSLHAPP 167
K KRQ QD L HAPP
Sbjct: 202 KCKRQRQDKSLEL----GAHAPP 220
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 66.2 bits (160), Expect = 3e-11
Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 9/97 (9%)
Query: 67 AGSSNLPAPER----TMAG--LSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLE 120
A + N+ P R TM G S+ PN R+RTAFT Q+ LE F + YLS L
Sbjct: 175 ATTYNVADPRRFHCLTMGGSDASQVPN---GKRMRTAFTSTQLLELEREFSSNMYLSRLR 231
Query: 121 RKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHS 157
R +A + LSE Q+K WFQNRR+KHK++ + Q +S
Sbjct: 232 RIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGTQRNS 268
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,208,581
Number of Sequences: 37866
Number of extensions: 730424
Number of successful extensions: 4694
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 4112
Number of HSP's gapped (non-prelim): 714
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.