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Search of human proteins with 74275350
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|74275350 translocator protein isoform PBR [Homo sapiens]
(169 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|74275350 translocator protein isoform PBR [Homo sapiens] 373 e-104
gi|229577236 benzodiazapine receptor (peripheral)-like 1 [Homo s... 115 2e-26
gi|58197560 benzodiazapine receptor (peripheral)-like 1 [Homo sa... 115 2e-26
gi|238814326 solute carrier family 22, member 20 [Homo sapiens] 30 1.3
gi|239757095 PREDICTED: similar to hCG2005276 [Homo sapiens] 29 2.2
gi|239751601 PREDICTED: hypothetical protein XP_002347933 [Homo ... 29 2.2
gi|239746116 PREDICTED: hypothetical protein XP_002344200 [Homo ... 29 2.2
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 28 2.9
gi|195539343 elongation of very long chain fatty acids-like 6 [H... 28 3.8
gi|13129088 elongation of very long chain fatty acids-like 6 [Ho... 28 3.8
gi|197927448 WD repeat domain 6 protein [Homo sapiens] 28 3.8
gi|14249552 disrupted in renal carcinoma 2 [Homo sapiens] 28 3.8
gi|22027554 voltage-dependent calcium channel gamma-6 subunit is... 28 3.8
gi|22027560 voltage-dependent calcium channel gamma-6 subunit is... 28 3.8
gi|22027557 voltage-dependent calcium channel gamma-6 subunit is... 28 3.8
gi|4826645 aquaporin 3 [Homo sapiens] 28 4.9
gi|9256602 protocadherin beta 10 precursor [Homo sapiens] 28 4.9
gi|14195616 protocadherin beta 9 precursor [Homo sapiens] 28 4.9
gi|21389403 folliculin isoform 2 [Homo sapiens] 27 6.4
gi|22907034 folliculin isoform 1 [Homo sapiens] 27 6.4
gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled... 27 6.4
gi|225543463 tetratricopeptide repeat, ankyrin repeat and coiled... 27 8.4
gi|225543461 tetratricopeptide repeat, ankyrin repeat and coiled... 27 8.4
gi|239747360 PREDICTED: hypothetical protein [Homo sapiens] 27 8.4
gi|239741185 PREDICTED: hypothetical protein XP_002342152 [Homo ... 27 8.4
>gi|74275350 translocator protein isoform PBR [Homo sapiens]
Length = 169
Score = 373 bits (958), Expect = e-104
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM 60
MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM
Sbjct: 1 MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM 60
Query: 61 GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAA 120
GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAA
Sbjct: 61 GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAA 120
Query: 121 ATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNHGWRGGRRLPE 169
ATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNHGWRGGRRLPE
Sbjct: 121 ATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNHGWRGGRRLPE 169
>gi|229577236 benzodiazapine receptor (peripheral)-like 1 [Homo
sapiens]
Length = 170
Score = 115 bits (288), Expect = 2e-26
Identities = 63/149 (42%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Query: 11 FTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKE 70
F L P LG + F W G + SW P + VL V +YS +GY SYLVWK+
Sbjct: 8 FVLLPHLGPILVWLFTRDHMSGWCEGPRMLSWCPFYKVLLLVQTAIYSVVGYASYLVWKD 67
Query: 71 LGG-FTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQV 129
LGG +PLGLY QL ++W +FF G AL+ LLL+ G +T + W+ +
Sbjct: 68 LGGGLGWPLALPLGLYAVQLTISWTVLVLFFTVHNPGLALLHLLLLYGLVVSTALIWHPI 127
Query: 130 SPLAARLLYPYLAWLAFTTTLNYCVWRDN 158
+ LAA LL PYLAWL T+ L Y +WRD+
Sbjct: 128 NKLAALLLLPYLAWLTVTSALTYHLWRDS 156
>gi|58197560 benzodiazapine receptor (peripheral)-like 1 [Homo
sapiens]
Length = 170
Score = 115 bits (288), Expect = 2e-26
Identities = 63/149 (42%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Query: 11 FTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKE 70
F L P LG + F W G + SW P + VL V +YS +GY SYLVWK+
Sbjct: 8 FVLLPHLGPILVWLFTRDHMSGWCEGPRMLSWCPFYKVLLLVQTAIYSVVGYASYLVWKD 67
Query: 71 LGG-FTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQV 129
LGG +PLGLY QL ++W +FF G AL+ LLL+ G +T + W+ +
Sbjct: 68 LGGGLGWPLALPLGLYAVQLTISWTVLVLFFTVHNPGLALLHLLLLYGLVVSTALIWHPI 127
Query: 130 SPLAARLLYPYLAWLAFTTTLNYCVWRDN 158
+ LAA LL PYLAWL T+ L Y +WRD+
Sbjct: 128 NKLAALLLLPYLAWLTVTSALTYHLWRDS 156
>gi|238814326 solute carrier family 22, member 20 [Homo sapiens]
Length = 555
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 50 GPVWGTLYSAMGYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGA 102
G ++ T MG G V LGG T V LG Y+ L PP+ FGA
Sbjct: 448 GELYPTEIRQMGMGFASVHARLGGLTAPLVTTLGEYSTIL------PPVSFGA 494
>gi|239757095 PREDICTED: similar to hCG2005276 [Homo sapiens]
Length = 261
Score = 28.9 bits (63), Expect = 2.2
Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 14 APSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKELGG 73
AP +G R + G RW A +P+ PHW GP +A +W LG
Sbjct: 89 APGQALSMGLRSMQ-VGARW-AQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLW--LGT 144
Query: 74 FTEKAVVPLGLYTGQLALNWA------WPPIFFGARQMGWALVDLLLVSGAAAATTVAWY 127
+ GL + L WA W P L LL A+A +W
Sbjct: 145 CPRQGTG--GLRSRSLRRPWARSSLESWAP---RGASGSLTLSQWLLAPLGASAPPQSWV 199
Query: 128 QVSPLAAR 135
VSPL R
Sbjct: 200 PVSPLNRR 207
>gi|239751601 PREDICTED: hypothetical protein XP_002347933 [Homo
sapiens]
Length = 282
Score = 28.9 bits (63), Expect = 2.2
Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 14 APSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKELGG 73
AP +G R + G RW A +P+ PHW GP +A +W LG
Sbjct: 110 APGQALSMGLRSMQ-VGARW-AQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLW--LGT 165
Query: 74 FTEKAVVPLGLYTGQLALNWA------WPPIFFGARQMGWALVDLLLVSGAAAATTVAWY 127
+ GL + L WA W P L LL A+A +W
Sbjct: 166 CPRQGTG--GLRSRSLRRPWARSSLESWAP---RGASGSLTLSQWLLAPLGASAPPQSWV 220
Query: 128 QVSPLAAR 135
VSPL R
Sbjct: 221 PVSPLNRR 228
>gi|239746116 PREDICTED: hypothetical protein XP_002344200 [Homo
sapiens]
Length = 282
Score = 28.9 bits (63), Expect = 2.2
Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 14 APSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKELGG 73
AP +G R + G RW A +P+ PHW GP +A +W LG
Sbjct: 110 APGQALSMGLRSMQ-VGARW-AQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLW--LGT 165
Query: 74 FTEKAVVPLGLYTGQLALNWA------WPPIFFGARQMGWALVDLLLVSGAAAATTVAWY 127
+ GL + L WA W P L LL A+A +W
Sbjct: 166 CPRQGTG--GLRSRSLRRPWARSSLESWAP---RGASGSLTLSQWLLAPLGASAPPQSWV 220
Query: 128 QVSPLAAR 135
VSPL R
Sbjct: 221 PVSPLNRR 228
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 28.5 bits (62), Expect = 2.9
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 2 APPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSW-HPPH 46
+PP A +LA S+GC + + G Y+GLQ W PPH
Sbjct: 159 SPPHKRATPSSLAHSVGCGMRGKAPTVSGQDGYSGLQPRRWAGPPH 204
>gi|195539343 elongation of very long chain fatty acids-like 6 [Homo
sapiens]
Length = 265
Score = 28.1 bits (61), Expect = 3.8
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 47 WVLGPVWGTLYSAMGYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMG 106
W L +++ A+ G+Y+V+ + +++V G Y G ++ WA+ + A ++G
Sbjct: 66 WSLTLAVFSIFGALRTGAYMVYILMTKGLKQSVCDQGFYNGPVSKFWAYAFVLSKAPELG 125
>gi|13129088 elongation of very long chain fatty acids-like 6 [Homo
sapiens]
Length = 265
Score = 28.1 bits (61), Expect = 3.8
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 47 WVLGPVWGTLYSAMGYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMG 106
W L +++ A+ G+Y+V+ + +++V G Y G ++ WA+ + A ++G
Sbjct: 66 WSLTLAVFSIFGALRTGAYMVYILMTKGLKQSVCDQGFYNGPVSKFWAYAFVLSKAPELG 125
>gi|197927448 WD repeat domain 6 protein [Homo sapiens]
Length = 1151
Score = 28.1 bits (61), Expect = 3.8
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 33 WYAGLQKPSWHPPHWVLGPVW--GTLYSAMGYGSYLVWKELGGFTEKAVVPLGLYTGQLA 90
W +GL W+ W+ W G + A+G+ S +++ + G + V T +
Sbjct: 138 WRSGL----WNMSDWIWDARWLEGNIALALGHNSVVLYDPVVGCILQEVP----CTDRCT 189
Query: 91 LNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQVSPLA 133
L+ A +G A +L +V+GA + + WY + LA
Sbjct: 190 LS--------SACLIGDAWKELTIVAGAVSNQLLVWYPATALA 224
>gi|14249552 disrupted in renal carcinoma 2 [Homo sapiens]
Length = 478
Score = 28.1 bits (61), Expect = 3.8
Identities = 29/97 (29%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 7 PAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHP-PHWVLGPVWGTL--YSAMGYG 63
P +G L P LG SR L P+ P P V G W L +S + +
Sbjct: 13 PLLGPGLGPGLGASWRSREAAAAAL--------PAAVPGPGRVYGRRWLVLLLFSLLAFV 64
Query: 64 SYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFF 100
LVW G A G + +AL W PI F
Sbjct: 65 QGLVWNTWGPIQNSARQAYGFSSWDIALLVLWGPIGF 101
>gi|22027554 voltage-dependent calcium channel gamma-6 subunit
isoform a [Homo sapiens]
Length = 260
Score = 28.1 bits (61), Expect = 3.8
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 3 PPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGY 62
PP P + + + SLGC VG+ + G + L PSW WG+L G+
Sbjct: 207 PPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSW---------PWGSLCPKRGH 257
>gi|22027560 voltage-dependent calcium channel gamma-6 subunit
isoform c [Homo sapiens]
Length = 189
Score = 28.1 bits (61), Expect = 3.8
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 3 PPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGY 62
PP P + + + SLGC VG+ + G + L PSW WG+L G+
Sbjct: 136 PPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSW---------PWGSLCPKRGH 186
>gi|22027557 voltage-dependent calcium channel gamma-6 subunit
isoform b [Homo sapiens]
Length = 214
Score = 28.1 bits (61), Expect = 3.8
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 3 PPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGY 62
PP P + + + SLGC VG+ + G + L PSW WG+L G+
Sbjct: 161 PPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSW---------PWGSLCPKRGH 211
>gi|4826645 aquaporin 3 [Homo sapiens]
Length = 292
Score = 27.7 bits (60), Expect = 4.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 4 PWVPAMGFTLAPSLGCFVGSRFVHG 28
PW+ +TLA +LG F+G+ V G
Sbjct: 97 PWIKLPIYTLAQTLGAFLGAGIVFG 121
>gi|9256602 protocadherin beta 10 precursor [Homo sapiens]
Length = 800
Score = 27.7 bits (60), Expect = 4.9
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 53 WGTLYSAMGYGSYLVWKEL--GGFTEKAVVPLGLYTGQLA 90
WG + G+G Y V +E G F LGL G+LA
Sbjct: 21 WGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELA 60
>gi|14195616 protocadherin beta 9 precursor [Homo sapiens]
Length = 797
Score = 27.7 bits (60), Expect = 4.9
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 53 WGTLYSAMGYGSYLVWKEL--GGFTEKAVVPLGLYTGQLA 90
WG + G+G Y V +E G F LGL G+LA
Sbjct: 21 WGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELA 60
>gi|21389403 folliculin isoform 2 [Homo sapiens]
Length = 342
Score = 27.3 bits (59), Expect = 6.4
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 97 PIFFGARQMGWALVDLLLVSGAAAATTVAWYQVSPLAARLLYPYLAW 143
PIFFG Q G+ + + A WY + + +Y +W
Sbjct: 140 PIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRIYLINSW 186
>gi|22907034 folliculin isoform 1 [Homo sapiens]
Length = 579
Score = 27.3 bits (59), Expect = 6.4
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 97 PIFFGARQMGWALVDLLLVSGAAAATTVAWYQVSPLAARLLYPYLAW 143
PIFFG Q G+ + + A WY + + +Y +W
Sbjct: 140 PIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRIYLINSW 186
>gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled-coil
containing 2 [Homo sapiens]
Length = 1990
Score = 27.3 bits (59), Expect = 6.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 97 PIFFGARQMGWALVDLLLVSGA 118
P+F RQ W +VDLLL GA
Sbjct: 1070 PLFSTVRQGHWQIVDLLLTHGA 1091
>gi|225543463 tetratricopeptide repeat, ankyrin repeat and coiled-coil
containing 1 isoform 2 [Homo sapiens]
Length = 1390
Score = 26.9 bits (58), Expect = 8.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 96 PPIFFGARQMGWALVDLLLVSG 117
PP+F ARQ W +V LLL G
Sbjct: 1106 PPLFCAARQGHWQIVRLLLERG 1127
>gi|225543461 tetratricopeptide repeat, ankyrin repeat and coiled-coil
containing 1 isoform 1 [Homo sapiens]
Length = 1861
Score = 26.9 bits (58), Expect = 8.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 96 PPIFFGARQMGWALVDLLLVSG 117
PP+F ARQ W +V LLL G
Sbjct: 1114 PPLFCAARQGHWQIVRLLLERG 1135
>gi|239747360 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 26.9 bits (58), Expect = 8.4
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 10/42 (23%)
Query: 37 LQKPSWHPPHWV----------LGPVWGTLYSAMGYGSYLVW 68
L +P W PP W+ G W + + + G++L W
Sbjct: 110 LSEPPWRPPKWLWQSCRGGGNKKGDTWLSFLNQLTMGTHLYW 151
>gi|239741185 PREDICTED: hypothetical protein XP_002342152 [Homo
sapiens]
Length = 160
Score = 26.9 bits (58), Expect = 8.4
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 10/42 (23%)
Query: 37 LQKPSWHPPHWV----------LGPVWGTLYSAMGYGSYLVW 68
L +P W PP W+ G W + + + G++L W
Sbjct: 110 LSEPPWRPPKWLWQSCRGGGNKKGDTWLSFLNQLTMGTHLYW 151
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.141 0.519
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,467,649
Number of Sequences: 37866
Number of extensions: 319698
Number of successful extensions: 799
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 25
length of query: 169
length of database: 18,247,518
effective HSP length: 95
effective length of query: 74
effective length of database: 14,650,248
effective search space: 1084118352
effective search space used: 1084118352
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.