Guide to the Human Genome
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Name: LOC100289178 Sequence: fasta or formatted (160aa) NCBI GI: 239747360
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {160aa} PREDICTED: hypothetical protein XP_002342152
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          5           1
 C cysteine            2.5          4           1
 D aspartate           3.1          5           1
 E glutamate           2.5          4           1
 F phenylalanine       3.8          6           1
 G glycine             7.5         12           3
 H histidine           3.1          5           1
 I isoleucine          2.5          4           1
 K lysine              6.9         11           2
 L leucine             8.8         14           2
 M methionine          2.5          4           2
 N asparagine          6.2         10           1
 P proline             5.6          9           2
 Q glutamine           8.1         13           2
 R arginine            3.8          6           1
 S serine             12.5         20           2
 T threonine           5.0          8           1
 V valine              5.0          8           1
 W tryptophan          4.4          7           1
 Y tyrosine            3.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289178          1.000   PREDICTED: hypothetical protein XP_002342152 
ARID1B                0.013   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.013   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.013   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
ERC1                  0.009   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.009   RAB6-interacting protein 2 isoform delta 
LOC100129303          0.006   PREDICTED: hypothetical protein 
LOC100129303          0.006   PREDICTED: hypothetical protein 
LOC100129303          0.006   PREDICTED: hypothetical protein 
KIAA0556              0.006   hypothetical protein LOC23247 
C8orf58               0.006   hypothetical protein LOC541565 
TSPO                  0.006   translocator protein isoform PBR 
FASTKD1               0.006   FAST kinase domains 1 
DENND3                0.006   DENN/MADD domain containing 3 
UNC5CL                0.006   unc-5 homolog C-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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