Guide to the Human Genome
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Name: AQP3 Sequence: fasta or formatted (292aa) NCBI GI: 4826645
Description:

aquaporin 3

Referenced in:

Aquaporins
Kidney

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         27           1
 C cysteine            2.1          6           1
 D aspartate           2.1          6           1
 E glutamate           3.4         10           3
 F phenylalanine       6.8         20           2
 G glycine            11.6         34           2
 H histidine           3.1          9           1
 I isoleucine          6.5         19           1
 K lysine              1.7          5           1
 L leucine            11.6         34           2
 M methionine          2.4          7           1
 N asparagine          3.8         11           2
 P proline             5.1         15           3
 Q glutamine           3.8         11           1
 R arginine            3.4         10           1
 S serine              4.5         13           1
 T threonine           5.1         15           2
 V valine              8.9         26           2
 W tryptophan          2.1          6           3
 Y tyrosine            2.7          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   aquaporin 3 
AQP9                  0.451   aquaporin 9 
AQP7                  0.436   aquaporin 7 
AQP10                 0.436   aquaporin 10 
AQP5                  0.106   aquaporin 5 
AQP4                  0.101   aquaporin 4 isoform b 
AQP4                  0.101   aquaporin 4 isoform a 
AQP1                  0.091   aquaporin 1 
AQP8                  0.091   aquaporin 8 
AQP2                  0.089   aquaporin 2 
MIP                   0.089   major intrinsic protein of lens fiber 
AQP6                  0.077   aquaporin 6 
SLC2A8                0.010   solute carrier family 2 (facilitated glucose transpo...
FAM115A               0.009   hypothetical protein LOC9747 
CHST11                0.009   carbohydrate sulfotransferase 11 
TRIM64                0.007   tripartite motif-containing 64 
LOC642446             0.007   PREDICTED: tripartite motif-containing protein 64B-...
CLDN19                0.007   claudin 19 isoform a 
RFPL1                 0.007   ret finger protein-like 1 
RFPL3                 0.007   ret finger protein-like 3 isoform 1 
RFPL3                 0.007   ret finger protein-like 3 isoform 2 
CLDN19                0.007   claudin 19 isoform b 
RFPL4A                0.007   ret finger protein-like 4A 
SLC1A6                0.005   solute carrier family 1 (high affinity aspartate/glut...
SPNS2                 0.005   spinster homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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