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Search of human proteins with 74136552
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|74136552 mesoderm development candidate 2 [Homo sapiens]
(234 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|74136552 mesoderm development candidate 2 [Homo sapiens] 476 e-135
gi|242332502 hypothetical protein LOC9674 [Homo sapiens] 33 0.21
gi|242332500 hypothetical protein LOC9674 [Homo sapiens] 33 0.21
gi|242332498 hypothetical protein LOC9674 [Homo sapiens] 33 0.21
gi|242332496 hypothetical protein LOC9674 [Homo sapiens] 33 0.21
gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens] 33 0.28
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 32 0.36
gi|186659512 calmodulin regulated spectrin-associated protein 1 ... 32 0.36
gi|223555917 metadherin [Homo sapiens] 32 0.47
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 32 0.47
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 32 0.47
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 32 0.61
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 32 0.61
gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [H... 32 0.61
gi|28466983 leprecan-like 2 [Homo sapiens] 32 0.61
gi|22035548 amyloid beta A4 precursor protein-binding, family A,... 32 0.61
gi|116256485 chromosome 6 open reading frame 10 [Homo sapiens] 32 0.61
gi|58530845 zyxin [Homo sapiens] 31 0.80
gi|4508047 zyxin [Homo sapiens] 31 0.80
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 31 1.0
gi|4506289 protein tyrosine phosphatase, non-receptor type 1 [Ho... 31 1.0
gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo sa... 31 1.0
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|61102725 la related protein isoform 2 [Homo sapiens] 30 1.4
gi|39725634 la related protein isoform 1 [Homo sapiens] 30 1.4
gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo sa... 30 1.4
gi|109255230 centrosomal protein 170kDa isoform beta [Homo sapiens] 30 1.4
gi|109255228 centrosomal protein 170kDa isoform alpha [Homo sapi... 30 1.4
gi|109255232 centrosomal protein 170kDa isoform gamma [Homo sapi... 30 1.4
gi|24308394 hypothetical protein LOC140893 [Homo sapiens] 30 1.4
>gi|74136552 mesoderm development candidate 2 [Homo sapiens]
Length = 234
Score = 476 bits (1224), Expect = e-135
Identities = 234/234 (100%), Positives = 234/234 (100%)
Query: 1 MAASRWARKAVVLLCASDLLLLLLLLPPPGSCAAEGSPGTPDESTPPPRKKKKDIRDYND 60
MAASRWARKAVVLLCASDLLLLLLLLPPPGSCAAEGSPGTPDESTPPPRKKKKDIRDYND
Sbjct: 1 MAASRWARKAVVLLCASDLLLLLLLLPPPGSCAAEGSPGTPDESTPPPRKKKKDIRDYND 60
Query: 61 ADMARLLEQWEKDDDIEEGDLPEHKRPSAPVDFSKIDPSKPESILKMTKKGKTLMMFVTV 120
ADMARLLEQWEKDDDIEEGDLPEHKRPSAPVDFSKIDPSKPESILKMTKKGKTLMMFVTV
Sbjct: 61 ADMARLLEQWEKDDDIEEGDLPEHKRPSAPVDFSKIDPSKPESILKMTKKGKTLMMFVTV 120
Query: 121 SGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVGQDRC 180
SGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVGQDRC
Sbjct: 121 SGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVGQDRC 180
Query: 181 ADVTLEGQVYPGKGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKREDL 234
ADVTLEGQVYPGKGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKREDL
Sbjct: 181 ADVTLEGQVYPGKGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKREDL 234
>gi|242332502 hypothetical protein LOC9674 [Homo sapiens]
Length = 99
Score = 33.1 bits (74), Expect = 0.21
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 191 PGKGGGSKEKNKTKQDKGKKKKEGDL 216
PGK G EKNK K+ K KKK E DL
Sbjct: 55 PGKRGQQPEKNKKKKKKKKKKDEEDL 80
>gi|242332500 hypothetical protein LOC9674 [Homo sapiens]
Length = 99
Score = 33.1 bits (74), Expect = 0.21
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 191 PGKGGGSKEKNKTKQDKGKKKKEGDL 216
PGK G EKNK K+ K KKK E DL
Sbjct: 55 PGKRGQQPEKNKKKKKKKKKKDEEDL 80
>gi|242332498 hypothetical protein LOC9674 [Homo sapiens]
Length = 99
Score = 33.1 bits (74), Expect = 0.21
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 191 PGKGGGSKEKNKTKQDKGKKKKEGDL 216
PGK G EKNK K+ K KKK E DL
Sbjct: 55 PGKRGQQPEKNKKKKKKKKKKDEEDL 80
>gi|242332496 hypothetical protein LOC9674 [Homo sapiens]
Length = 99
Score = 33.1 bits (74), Expect = 0.21
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 191 PGKGGGSKEKNKTKQDKGKKKKEGDL 216
PGK G EKNK K+ K KKK E DL
Sbjct: 55 PGKRGQQPEKNKKKKKKKKKKDEEDL 80
>gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens]
Length = 4981
Score = 32.7 bits (73), Expect = 0.28
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 22/108 (20%)
Query: 6 WARKAVVLLCASDLLLLLLLLPPPGSCAAEGSPGTPDESTPPPRKKK----------KDI 55
WA A+V CA+ L LL+L L C + + +E P +KKK +I
Sbjct: 4503 WAVPAIVGSCATVLALLVLSLILCNQCRGKKAKNPKEEKKPKEKKKKGSENVAFDDPDNI 4562
Query: 56 RDYNDADMARLLEQWEKDDDI----------EEGDLPEHKR--PSAPV 91
Y D R + DI +E D+P + PSAP+
Sbjct: 4563 PPYGDDMTVRKQPEGNPKPDIIERENPYLIYDETDIPHNSETIPSAPL 4610
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 32.3 bits (72), Expect = 0.36
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 72 KDDDIEEGDLPEHKRPSAPVDFSKIDPSKPESILKMTKKGKTLMMFVTVSGSP-----TE 126
+D ++ E ++ E P +P+ K P P ++ K + L++ + + SP +E
Sbjct: 522 EDSNLVEEEIVELDYPESPLVSEK--PFPPHMSPEVEHKEEELILPLLAASSPEHVALSE 579
Query: 127 KETEEITSLWQGSLFNANYDV 147
+E EEI S+ GS F + Y V
Sbjct: 580 EEREEIASVSTGSAFVSEYSV 600
>gi|186659512 calmodulin regulated spectrin-associated protein 1 [Homo
sapiens]
Length = 1602
Score = 32.3 bits (72), Expect = 0.36
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 174 LVGQDRCADVTLEGQVYPGKGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENR 226
LV D AD+ EG PG G K++ K + + KK+ LK + EE R
Sbjct: 1250 LVSLDGSADLVSEGDQKPGVGFFFKDEQKAEDELAKKRAAFLLKQQRKAEEAR 1302
>gi|223555917 metadherin [Homo sapiens]
Length = 582
Score = 32.0 bits (71), Expect = 0.47
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 193 KGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKREDL 234
KG G+ K+K+ K KKKK+G+ S + E REDL
Sbjct: 432 KGEGALPTGKSKKKKKKKKKQGEDNSTAQDTEELEKEIREDL 473
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 32.0 bits (71), Expect = 0.47
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 193 KGGGSKEKNKTKQ-DKGKKKKEGDLKSRSSKEENRAGNKRE 232
K G KEK K K+ +K KKKK + + R KEE KR+
Sbjct: 25 KEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRK 65
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 32.0 bits (71), Expect = 0.47
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 198 KEKNKTKQDKGKKK-KEGDLKSRSSKEENRAGNKRE 232
KEK K K++K KKK KE + K + ++E R KRE
Sbjct: 699 KEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKRE 734
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 198 KEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
KEK K K K KKKK+ K + KE + +RE
Sbjct: 697 KEKEKKKDKKEKKKKKEKEKEKKEKEREKEKRERE 731
Score = 28.5 bits (62), Expect = 5.2
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 189 VYPGKGGGSKEKNKTKQDK--GKKKKEGDLKSRSSKEENRAGNKRE 232
V P K KEK K K+ K K+KK+ K + KE+ R KRE
Sbjct: 684 VLPEKLFEEKEKVKEKEKKKDKKEKKKKKEKEKEKKEKEREKEKRE 729
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 31.6 bits (70), Expect = 0.61
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 31/210 (14%)
Query: 38 PGTPD-----ESTPPPRKKKKDIRDYNDADMARLLEQWEKDDDIEE-----GDLPEHKRP 87
P TP+ S+ K K D+ + N A+ + + +++ +EE E K
Sbjct: 29 PVTPEVKPKRTSSSRKMKTKSDMMEENIDTSAQAVAETKQEAVVEEDYNENAKNGEAKIT 88
Query: 88 SAPVDFSKIDPSKPESILKMTKKG---KTLMMFVTVSGSPTEKETEEITSLWQGSLFNAN 144
AP +I K E+I T+KG K + + +KE EE + +G +
Sbjct: 89 EAPASEKEIVEVKEENIEDATEKGGEKKEAVAAEVKNEEEDQKEDEEDQNEEKGEAGKED 148
Query: 145 YDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVGQDRCADVTLEGQVYPGKGGGS--KEKNK 202
D + G + + G A E +D G+D GKG G KEK +
Sbjct: 149 KDEKGEEDGKEDKNGNEK-GEDAKEKEDGKKGED-------------GKGNGEDGKEKGE 194
Query: 203 TKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
++++ +K+ GD K +E G+K+E
Sbjct: 195 DEKEEEDRKETGDGKENEDGKEK--GDKKE 222
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 31.6 bits (70), Expect = 0.61
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 193 KGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRED 233
K S +KN+ K D KKKK+ D K + KEE K E+
Sbjct: 181 KKSKSDDKNENKNDPEKKKKKKD-KEKKKKEEKSKDKKEEE 220
Score = 30.4 bits (67), Expect = 1.4
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 199 EKNKTKQDKGKKKKEGDLKSRSSKEENR 226
EK K K+DK KKKKE KS+ KEE +
Sbjct: 196 EKKKKKKDKEKKKKEE--KSKDKKEEEK 221
Score = 27.7 bits (60), Expect = 8.9
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 198 KEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKREDL 234
K +NK +K KKKK+ + K + K +++ +++++
Sbjct: 188 KNENKNDPEKKKKKKDKEKKKKEEKSKDKKEEEKKEV 224
>gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [Homo
sapiens]
Length = 690
Score = 31.6 bits (70), Expect = 0.61
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 193 KGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRED 233
K S +KN+ K D KKKK+ D K + KEE K E+
Sbjct: 112 KKSKSDDKNENKNDPEKKKKKKD-KEKKKKEEKSKDKKEEE 151
Score = 30.4 bits (67), Expect = 1.4
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 199 EKNKTKQDKGKKKKEGDLKSRSSKEENR 226
EK K K+DK KKKKE KS+ KEE +
Sbjct: 127 EKKKKKKDKEKKKKEE--KSKDKKEEEK 152
Score = 27.7 bits (60), Expect = 8.9
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 198 KEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKREDL 234
K +NK +K KKKK+ + K + K +++ +++++
Sbjct: 119 KNENKNDPEKKKKKKDKEKKKKEEKSKDKKEEEKKEV 155
>gi|28466983 leprecan-like 2 [Homo sapiens]
Length = 736
Score = 31.6 bits (70), Expect = 0.61
Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 20 LLLLLLLPPPGSCAAEG----SPGTPDES 44
LLLLLLLPPPGS G SPG P ++
Sbjct: 8 LLLLLLLPPPGSPEPPGLTQLSPGAPPQA 36
>gi|22035548 amyloid beta A4 precursor protein-binding, family A,
member 1 [Homo sapiens]
Length = 837
Score = 31.6 bits (70), Expect = 0.61
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 16/112 (14%)
Query: 37 SPGTPDESTPPPRKKKKDIRDYNDADMARLLEQWEKDDDIEEGDLPEHKRPS---APVDF 93
SP TPDE P ++DI D D R + +GD P S A
Sbjct: 367 SPYTPDEPKEPIWVMRQDISPTRDCDDQRPM----------DGDSPSPGSSSPLGAESSS 416
Query: 94 SKIDPSKPESILKMTKKGKTLMMFVTVSGSPTEKETEEITSLWQGSLFNANY 145
+ + PS P + K+L F T P + E+ L G +F ANY
Sbjct: 417 TSLHPSDPVEASTNKESRKSLASFPTYVEVPGPCDPED---LIDGIIFAANY 465
>gi|116256485 chromosome 6 open reading frame 10 [Homo sapiens]
Length = 563
Score = 31.6 bits (70), Expect = 0.61
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 190 YPGKGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
+ KG KEK + + KK++GD ++ K +++ KRE
Sbjct: 493 FEDKGNNDKEKERDAEKDPNKKEKGDKNTKGDKGKDKVKGKRE 535
Score = 28.9 bits (63), Expect = 4.0
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 11/61 (18%)
Query: 184 TLEGQVYPG-----KGGGSKEKNKTKQDKGK--KKKEGDLKSRSSKEE----NRAGNKRE 232
TLE QV KG ++EK ++ +DKG K+KE D + +K+E N G+K +
Sbjct: 468 TLESQVKKSESGVLKGQEAQEKKESFEDKGNNDKEKERDAEKDPNKKEKGDKNTKGDKGK 527
Query: 233 D 233
D
Sbjct: 528 D 528
>gi|58530845 zyxin [Homo sapiens]
Length = 572
Score = 31.2 bits (69), Expect = 0.80
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 28 PPGSCAAEGSPGTPDESTPPPRKKKKDIRDYNDADMARLLEQWEKDDDIEEGDLPEHKRP 87
PP EG P P P PR+K I D ++ LL+ K+D + + P
Sbjct: 117 PPPPPEEEGGPEAPIPPPPQPREKVSSI-DLEIDSLSSLLDDMTKNDPFKARVSSGYVPP 175
Query: 88 SAPVDFSKIDPSKP 101
FS +KP
Sbjct: 176 PVATPFSSKSSTKP 189
>gi|4508047 zyxin [Homo sapiens]
Length = 572
Score = 31.2 bits (69), Expect = 0.80
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 28 PPGSCAAEGSPGTPDESTPPPRKKKKDIRDYNDADMARLLEQWEKDDDIEEGDLPEHKRP 87
PP EG P P P PR+K I D ++ LL+ K+D + + P
Sbjct: 117 PPPPPEEEGGPEAPIPPPPQPREKVSSI-DLEIDSLSSLLDDMTKNDPFKARVSSGYVPP 175
Query: 88 SAPVDFSKIDPSKP 101
FS +KP
Sbjct: 176 PVATPFSSKSSTKP 189
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 30.8 bits (68), Expect = 1.0
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 42 DESTPPPRKKKKDIRDYNDADMARLLEQWEKDDDIEEGDLPEHKRPSAPV------DFSK 95
D+ TP + + R+ + E+ E+DD+ EEGD K AP+ + +
Sbjct: 251 DQETPSRNLRVRADRNLKTEEEEEEEEEEEEDDEEEEGDDEGQKSREAPILKEFKEEGEE 310
Query: 96 IDPSKPESILKMTKKGKTLMMFVTVSGSPTEKETEE 131
I KPE ++ K ++ V G + EE
Sbjct: 311 IPRVKPEEMMDERPKTRSQEQEVLERGGRFTRSQEE 346
>gi|4506289 protein tyrosine phosphatase, non-receptor type 1 [Homo
sapiens]
Length = 435
Score = 30.8 bits (68), Expect = 1.0
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 41 PDESTPPPRKKKKDIRDYNDADMARL-LEQWEKDDDIEEGDLPEHKRPSAPVDFSK--ID 97
P+ PPPR K+ + +N QW K++ E+ D P + +P++ + I+
Sbjct: 303 PEHIPPPPRPPKRILEPHNGKCREFFPNHQWVKEETQEDKDCPIKEEKGSPLNAAPYGIE 362
Query: 98 PSKPESILKMTKKGKTLMMFVTVS---GSPT--EKETEEITSLWQGSLFN 142
++ ++ G +L S G P+ EK+ + S W+ L N
Sbjct: 363 SMSQDTEVRSRVVGGSLRGAQAASPAKGEPSLPEKDEDHALSYWKPFLVN 412
>gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo
sapiens]
Length = 938
Score = 30.8 bits (68), Expect = 1.0
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 1 MAASRWARKAVVLLCASDLLLLLLLL-----PPPGSCAAEGSPGTPDESTPPPRKKKKDI 55
+AA+ WA A LL AS LL+ + L P PG G+P P + P + +
Sbjct: 6 LAAAEWAALAWELLGASVLLIAVRWLVRRLGPRPGGLGRSGTPVPPPSAAAAPASGEMTM 65
Query: 56 RDYNDADMARLLEQWEKDDDIEE 78
DA +ARL + DD+ E
Sbjct: 66 ----DALLARL--KLLNPDDLRE 82
>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 30.4 bits (67), Expect = 1.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 198 KEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
KEK K K+ K KKKK+ K + K++ + KR+
Sbjct: 108 KEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRK 142
Score = 30.4 bits (67), Expect = 1.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 198 KEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
KEK K K+ K KKKK+ K + K++ + KR+
Sbjct: 110 KEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRK 144
Score = 29.3 bits (64), Expect = 3.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 198 KEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
KEK K K+ K KKKK+ K + K++ + K++
Sbjct: 106 KEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 140
Score = 28.9 bits (63), Expect = 4.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 198 KEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
K+K K K+ K KKKK+ K + K++ + KR+
Sbjct: 112 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRK 146
Score = 28.9 bits (63), Expect = 4.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 198 KEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
K+K K K+ K KKKK+ K + K++ + KR+
Sbjct: 114 KKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRK 148
Score = 28.5 bits (62), Expect = 5.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 198 KEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
K+K K K+ K KKKK+ K + K + + KR+
Sbjct: 116 KKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRK 150
Score = 28.1 bits (61), Expect = 6.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 198 KEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
K+K K K+ K KKKK+ K + K + + KR+
Sbjct: 118 KKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRK 152
Score = 28.1 bits (61), Expect = 6.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 198 KEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
K+K K K+ K KKKK+ K R K + + K++
Sbjct: 120 KKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKK 154
Score = 28.1 bits (61), Expect = 6.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 198 KEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
K+K K K+ K KKKK+ + R K + + KR+
Sbjct: 122 KKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRK 156
Score = 27.7 bits (60), Expect = 8.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 198 KEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNK 230
K+K K K+ K K+K++ K + K++ + GN+
Sbjct: 133 KKKKKKKKRKRKRKRKRKRKKKRKKKKKKTGNE 165
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 30.4 bits (67), Expect = 1.4
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 192 GKGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
G+G SKE KTK D+ ++K GD + ++ + GNK +
Sbjct: 212 GEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKK-GNKHK 251
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 30.4 bits (67), Expect = 1.4
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 192 GKGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKRE 232
G+G SKE KTK D+ ++K GD + ++ + GNK +
Sbjct: 135 GEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKK-GNKHK 174
>gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo
sapiens]
Length = 1925
Score = 30.4 bits (67), Expect = 1.4
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 6 WARKAVVLLCASDLLLLLLLLPPPGSCAAEGSPGTPDESTPPP----RKKKKDIRDYNDA 61
W ++ + + L L+ +LP P S +G P E P KK++ + +
Sbjct: 1711 WNEQSTKFMDQKNSLYLMPILPVPSSSWEDGKGKQPKEDRPEHYPGLGKKEEGEEEKGEE 1770
Query: 62 DMARLLEQWEKDDDIEEGDL 81
+ L E+ E++++ EE +L
Sbjct: 1771 EEEELEEEEEEEEETEEEEL 1790
>gi|109255230 centrosomal protein 170kDa isoform beta [Homo sapiens]
Length = 1486
Score = 30.4 bits (67), Expect = 1.4
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 23/213 (10%)
Query: 30 GSCAAEGSPGTPDESTPPPR-KKKKDIRDYNDADMARLLEQWEKDD-DIEEGDLP----E 83
GS + S G T P ++K + + + + E EK D +++E + P +
Sbjct: 531 GSATSLASQGERRRRTLPQLPNEEKSLESHRAKVVTQRSEIGEKQDTELQEKETPTQVYQ 590
Query: 84 HKRPSAPVDFSKIDPSKPESILKMTKKGKTLMMFVTVSGSPTEKETEEITSLWQGSLFNA 143
+ A SK++ + LK KTL+ + + + ET++ TSL + +L
Sbjct: 591 KDKQDADRPLSKMNRAVNGETLKTGGDNKTLLHLGSSAPGKEKSETDKETSLVKQTLAKL 650
Query: 144 NYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVGQDRCADVTLEGQVYP---GKGGGSKEK 200
QR + A + S K+ D+C + T + + P G + +
Sbjct: 651 QQQEQR-----EEAQWTPTKLS----SKNVSGQTDKCREETFKQESQPPEKNSGHSTSKG 701
Query: 201 NKTKQDKGKKKK-EGDLKSRSSKEENRAGNKRE 232
++ Q + K++K E LKS++ K G+K+E
Sbjct: 702 DRVAQSESKRRKAEEILKSQTPK----GGDKKE 730
>gi|109255228 centrosomal protein 170kDa isoform alpha [Homo
sapiens]
Length = 1584
Score = 30.4 bits (67), Expect = 1.4
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 23/213 (10%)
Query: 30 GSCAAEGSPGTPDESTPPPR-KKKKDIRDYNDADMARLLEQWEKDD-DIEEGDLP----E 83
GS + S G T P ++K + + + + E EK D +++E + P +
Sbjct: 629 GSATSLASQGERRRRTLPQLPNEEKSLESHRAKVVTQRSEIGEKQDTELQEKETPTQVYQ 688
Query: 84 HKRPSAPVDFSKIDPSKPESILKMTKKGKTLMMFVTVSGSPTEKETEEITSLWQGSLFNA 143
+ A SK++ + LK KTL+ + + + ET++ TSL + +L
Sbjct: 689 KDKQDADRPLSKMNRAVNGETLKTGGDNKTLLHLGSSAPGKEKSETDKETSLVKQTLAKL 748
Query: 144 NYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVGQDRCADVTLEGQVYP---GKGGGSKEK 200
QR + A + S K+ D+C + T + + P G + +
Sbjct: 749 QQQEQR-----EEAQWTPTKLS----SKNVSGQTDKCREETFKQESQPPEKNSGHSTSKG 799
Query: 201 NKTKQDKGKKKK-EGDLKSRSSKEENRAGNKRE 232
++ Q + K++K E LKS++ K G+K+E
Sbjct: 800 DRVAQSESKRRKAEEILKSQTPK----GGDKKE 828
>gi|109255232 centrosomal protein 170kDa isoform gamma [Homo
sapiens]
Length = 1460
Score = 30.4 bits (67), Expect = 1.4
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 23/213 (10%)
Query: 30 GSCAAEGSPGTPDESTPPPR-KKKKDIRDYNDADMARLLEQWEKDD-DIEEGDLP----E 83
GS + S G T P ++K + + + + E EK D +++E + P +
Sbjct: 531 GSATSLASQGERRRRTLPQLPNEEKSLESHRAKVVTQRSEIGEKQDTELQEKETPTQVYQ 590
Query: 84 HKRPSAPVDFSKIDPSKPESILKMTKKGKTLMMFVTVSGSPTEKETEEITSLWQGSLFNA 143
+ A SK++ + LK KTL+ + + + ET++ TSL + +L
Sbjct: 591 KDKQDADRPLSKMNRAVNGETLKTGGDNKTLLHLGSSAPGKEKSETDKETSLVKQTLAKL 650
Query: 144 NYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVGQDRCADVTLEGQVYP---GKGGGSKEK 200
QR + A + S K+ D+C + T + + P G + +
Sbjct: 651 QQQEQR-----EEAQWTPTKLS----SKNVSGQTDKCREETFKQESQPPEKNSGHSTSKG 701
Query: 201 NKTKQDKGKKKK-EGDLKSRSSKEENRAGNKRE 232
++ Q + K++K E LKS++ K G+K+E
Sbjct: 702 DRVAQSESKRRKAEEILKSQTPK----GGDKKE 730
>gi|24308394 hypothetical protein LOC140893 [Homo sapiens]
Length = 664
Score = 30.4 bits (67), Expect = 1.4
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 24 LLLPPPGSCAAE--GSPGTPDESTPPPRKKKKDIRDYNDADMARLLEQWEKDDDIEEGDL 81
L L PGS E G P P PPP + D+ + + A +L + D+++E D
Sbjct: 521 LSLSSPGSTEDEDTGRPLPPPHPQPPPHPQPPDLDGHPEPSKAEVLR--PESDELDETDT 578
Query: 82 P 82
P
Sbjct: 579 P 579
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,221,076
Number of Sequences: 37866
Number of extensions: 593705
Number of successful extensions: 4518
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 4169
Number of HSP's gapped (non-prelim): 371
length of query: 234
length of database: 18,247,518
effective HSP length: 99
effective length of query: 135
effective length of database: 14,498,784
effective search space: 1957335840
effective search space used: 1957335840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.