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Search of human proteins with 73858559
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo
sapiens]
(363 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo sa... 716 0.0
gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 641 0.0
gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 641 0.0
gi|52630338 proline/serine-rich coiled-coil 1 isoform b [Homo sa... 433 e-121
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 55 1e-07
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 55 1e-07
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 54 2e-07
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 54 3e-07
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 52 6e-07
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 51 1e-06
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 51 2e-06
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 51 2e-06
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 51 2e-06
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 51 2e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 48 1e-05
gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens] 48 2e-05
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-05
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-05
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-05
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap... 47 3e-05
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap... 47 3e-05
gi|171543895 ataxin 2 [Homo sapiens] 47 3e-05
gi|118402590 myosin XV [Homo sapiens] 47 3e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 46 5e-05
gi|167736355 mucin 4 isoform a [Homo sapiens] 46 6e-05
gi|41281612 zinc finger protein 828 [Homo sapiens] 46 6e-05
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 46 6e-05
gi|49472835 bridging integrator 2 [Homo sapiens] 46 6e-05
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 45 8e-05
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 45 8e-05
>gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo
sapiens]
Length = 363
Score = 716 bits (1849), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ 60
MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ
Sbjct: 1 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ 60
Query: 61 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK 120
GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK
Sbjct: 61 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK 120
Query: 121 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL 180
DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL
Sbjct: 121 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL 180
Query: 181 FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSP 240
FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSP
Sbjct: 181 FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSP 240
Query: 241 PGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG 300
PGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG
Sbjct: 241 PGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG 300
Query: 301 RGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPG 360
RGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPG
Sbjct: 301 RGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPG 360
Query: 361 PTR 363
PTR
Sbjct: 361 PTR 363
>gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 641 bits (1654), Expect = 0.0
Identities = 333/363 (91%), Positives = 333/363 (91%), Gaps = 30/363 (8%)
Query: 1 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ 60
MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ
Sbjct: 1 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ 60
Query: 61 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK 120
GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK
Sbjct: 61 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK 120
Query: 121 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL 180
DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL
Sbjct: 121 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL 180
Query: 181 FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSP 240
FPASKSPASSPLTRSTPPVRGRAGPSGRAAAS
Sbjct: 181 FPASKSPASSPLTRSTPPVRGRAGPSGRAAAS---------------------------- 212
Query: 241 PGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG 300
PPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG
Sbjct: 213 --PPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG 270
Query: 301 RGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPG 360
RGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPG
Sbjct: 271 RGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPG 330
Query: 361 PTR 363
PTR
Sbjct: 331 PTR 333
>gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 641 bits (1654), Expect = 0.0
Identities = 333/363 (91%), Positives = 333/363 (91%), Gaps = 30/363 (8%)
Query: 1 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ 60
MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ
Sbjct: 1 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ 60
Query: 61 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK 120
GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK
Sbjct: 61 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK 120
Query: 121 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL 180
DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL
Sbjct: 121 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL 180
Query: 181 FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSP 240
FPASKSPASSPLTRSTPPVRGRAGPSGRAAAS
Sbjct: 181 FPASKSPASSPLTRSTPPVRGRAGPSGRAAAS---------------------------- 212
Query: 241 PGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG 300
PPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG
Sbjct: 213 --PPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG 270
Query: 301 RGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPG 360
RGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPG
Sbjct: 271 RGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPG 330
Query: 361 PTR 363
PTR
Sbjct: 331 PTR 333
>gi|52630338 proline/serine-rich coiled-coil 1 isoform b [Homo
sapiens]
Length = 310
Score = 433 bits (1114), Expect = e-121
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ 60
MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ
Sbjct: 1 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ 60
Query: 61 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK 120
GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK
Sbjct: 61 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK 120
Query: 121 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL 180
DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL
Sbjct: 121 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL 180
Query: 181 FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLR 221
FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLR
Sbjct: 181 FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLR 221
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 54.7 bits (130), Expect = 1e-07
Identities = 72/254 (28%), Positives = 95/254 (37%), Gaps = 33/254 (12%)
Query: 102 GLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRK----GSV 157
G P + P ++ SP P V R PSP P N GS+
Sbjct: 177 GSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQ-PSPGPTPPPFPGNRGTALGGGSI 235
Query: 158 RALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRA 217
R +S SN PT + K P P + P + A P ++
Sbjct: 236 RQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVP 295
Query: 218 AKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAP-QPSTSNSQRLPR-PQGAAAKSSS 275
+ R S S + +PP PP P R P PS+S + PR PQ + SSS
Sbjct: 296 STPRPSASSQ-----------APPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSS 344
Query: 276 QLPIPS-----AIPRPASRMPLTSRSVPPGR-GALPPD-----SLSTRKGLPR----PST 320
P+PS +P P S P PPGR G LPP + ST + LP PS
Sbjct: 345 TPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSR 404
Query: 321 AGHRVRESGHKVPV 334
+G SG + P+
Sbjct: 405 SGVDSPRSGPRPPL 418
Score = 39.7 bits (91), Expect = 0.004
Identities = 69/279 (24%), Positives = 91/279 (32%), Gaps = 51/279 (18%)
Query: 104 GPRRVKPSPRRETF------VLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRK--- 154
GPR+ P P F L +R P +S S P TP +D+
Sbjct: 209 GPRQPSPGPTPPPFPGNRGTALGGGSIRQS-PLSSSSPFSNRPPLPPTPSRALDDKPPPP 267
Query: 155 ----GSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAA 210
G+ ++ + P + P P++ P++S PP R GP
Sbjct: 268 PPPVGNRPSIHREAVPPPPPQNNKPPV----PSTPRPSASSQAPPPPPPPSRPGPPPLPP 323
Query: 211 ASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAA 270
+S SG+ E L + L S PP P P P S+R P P
Sbjct: 324 SS----------SGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPP-SERPPPPVRDP 372
Query: 271 AKSSSQLPIPSAIPRPASRMPLTSRSVP-----PGRGA-----------LPPDSLSTRKG 314
S LP P P SR TSR++P P R LPPD S G
Sbjct: 373 PGRSGPLPPPP----PVSRNGSTSRALPATPQLPSRSGVDSPRSGPRPPLPPDRPSA--G 426
Query: 315 LPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPP 353
P P +R P S+L PP
Sbjct: 427 APPPPPPSTSIRNGFQDSPCEDEWESRFYFHPISDLPPP 465
Score = 35.0 bits (79), Expect = 0.10
Identities = 37/128 (28%), Positives = 48/128 (37%), Gaps = 19/128 (14%)
Query: 234 KFLHPSP---PGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRM 290
+F PSP GPP P R+ + P PRP + S P+PS PRP
Sbjct: 149 RFPVPSPGHRSGPPEPQRNRMPP----------PRPDVGSKPDSIPPPVPST-PRPIQSS 197
Query: 291 PLTSRSVPPGRGALPPDSLSTRKGLP---RPSTAGHRVRES--GHKVPVSQRLNLPVMGA 345
P S P G P T P + G +R+S P S R LP +
Sbjct: 198 PHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPS 257
Query: 346 TRSNLQPP 353
+ +PP
Sbjct: 258 RALDDKPP 265
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 54.7 bits (130), Expect = 1e-07
Identities = 72/254 (28%), Positives = 95/254 (37%), Gaps = 33/254 (12%)
Query: 102 GLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRK----GSV 157
G P + P ++ SP P V R PSP P N GS+
Sbjct: 177 GSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQ-PSPGPTPPPFPGNRGTALGGGSI 235
Query: 158 RALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRA 217
R +S SN PT + K P P + P + A P ++
Sbjct: 236 RQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVP 295
Query: 218 AKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAP-QPSTSNSQRLPR-PQGAAAKSSS 275
+ R S S + +PP PP P R P PS+S + PR PQ + SSS
Sbjct: 296 STPRPSASSQ-----------APPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSS 344
Query: 276 QLPIPS-----AIPRPASRMPLTSRSVPPGR-GALPPD-----SLSTRKGLPR----PST 320
P+PS +P P S P PPGR G LPP + ST + LP PS
Sbjct: 345 TPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSR 404
Query: 321 AGHRVRESGHKVPV 334
+G SG + P+
Sbjct: 405 SGVDSPRSGPRPPL 418
Score = 39.7 bits (91), Expect = 0.004
Identities = 69/279 (24%), Positives = 91/279 (32%), Gaps = 51/279 (18%)
Query: 104 GPRRVKPSPRRETF------VLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRK--- 154
GPR+ P P F L +R P +S S P TP +D+
Sbjct: 209 GPRQPSPGPTPPPFPGNRGTALGGGSIRQS-PLSSSSPFSNRPPLPPTPSRALDDKPPPP 267
Query: 155 ----GSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAA 210
G+ ++ + P + P P++ P++S PP R GP
Sbjct: 268 PPPVGNRPSIHREAVPPPPPQNNKPPV----PSTPRPSASSQAPPPPPPPSRPGPPPLPP 323
Query: 211 ASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAA 270
+S SG+ E L + L S PP P P P S+R P P
Sbjct: 324 SS----------SGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPP-SERPPPPVRDP 372
Query: 271 AKSSSQLPIPSAIPRPASRMPLTSRSVP-----PGRGA-----------LPPDSLSTRKG 314
S LP P P SR TSR++P P R LPPD S G
Sbjct: 373 PGRSGPLPPPP----PVSRNGSTSRALPATPQLPSRSGVDSPRSGPRPPLPPDRPSA--G 426
Query: 315 LPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPP 353
P P +R P S+L PP
Sbjct: 427 APPPPPPSTSIRNGFQDSPCEDEWESRFYFHPISDLPPP 465
Score = 35.0 bits (79), Expect = 0.10
Identities = 37/128 (28%), Positives = 48/128 (37%), Gaps = 19/128 (14%)
Query: 234 KFLHPSP---PGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRM 290
+F PSP GPP P R+ + P PRP + S P+PS PRP
Sbjct: 149 RFPVPSPGHRSGPPEPQRNRMPP----------PRPDVGSKPDSIPPPVPST-PRPIQSS 197
Query: 291 PLTSRSVPPGRGALPPDSLSTRKGLP---RPSTAGHRVRES--GHKVPVSQRLNLPVMGA 345
P S P G P T P + G +R+S P S R LP +
Sbjct: 198 PHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPS 257
Query: 346 TRSNLQPP 353
+ +PP
Sbjct: 258 RALDDKPP 265
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 53.9 bits (128), Expect = 2e-07
Identities = 78/280 (27%), Positives = 114/280 (40%), Gaps = 41/280 (14%)
Query: 122 SPVRDLLPTVNSLTRS--TPSPSSLT------PRLRSNDRKGSVRALRATSGKRPSNMKR 173
+PV P SL S +PS S+LT P L S+ G L TS P
Sbjct: 1481 APVVPAAPGPPSLAPSGASPSASALTLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNST 1540
Query: 174 ESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLT- 232
+P C+ S +SP + P +A A+++ + A L + + L
Sbjct: 1541 VAPACSPVLVPASALASPFPSAPNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAP 1600
Query: 233 --------LKFLHPSPPGPP------TPIRSVLAPQ--PSTS--NSQRLPRPQGAAAKSS 274
L L PSP P TP+ V+AP P TS ++ +P P A SS
Sbjct: 1601 SPAPPLAPLPVLAPSPGAAPVLASSQTPV-PVMAPSSTPGTSLASASPVPAPTPVLAPSS 1659
Query: 275 SQ----LPIPSAIPRPAS--RMPLTSRSVPPGRGALPPDSLSTRKGLPRP--STAGHRVR 326
+Q P+PS +P PAS + L P G+ P +LS G P+ T +
Sbjct: 1660 TQTMLPAPVPSPLPSPASTQTLALAPALAPTLGGSSPSQTLSLGTGNPQGPFPTQTLSLT 1719
Query: 327 ESGHKVPV-SQRLNL---PVMGATRS-NLQPPRKVAVPGP 361
+ VP +Q L+L P +G T++ +L P +A P
Sbjct: 1720 PASSLVPTPAQTLSLAPGPPLGPTQTLSLAPAPPLAPASP 1759
Score = 40.4 bits (93), Expect = 0.002
Identities = 71/282 (25%), Positives = 100/282 (35%), Gaps = 51/282 (18%)
Query: 33 TVLVTPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCA 92
T LVTP PL G P +V + L LG L PE E+ +A LE +
Sbjct: 2518 TCLVTPSSPLLLG------PPSVPISASVTNLPLG-LRPEA--ELCAQALASPESLELAS 2568
Query: 93 LQDRESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSND 152
+ E++ L P +DLLP + + SLTP
Sbjct: 2569 VASSETSSLSL------------------VPPKDLLPVAVEILPVSEKNLSLTP------ 2604
Query: 153 RKGSVRALRATSGKRPSNMKRESP-TCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAA 211
S +L +G P+ ++E+P + + P L G P +AA
Sbjct: 2605 ---SAPSLTLEAGSIPNGQEQEAPDSAEGTTLTVLPEGEELPLCVSESNGLELPP--SAA 2659
Query: 212 SEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAA 271
S+E L + E LT S P P + + PSTS+S A
Sbjct: 2660 SDEPLQEPLEADRTSE--ELTEAKTPTSSPEKPQELVTAEVAAPSTSSS----------A 2707
Query: 272 KSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRK 313
SS + P P+ PR + + R GR PP RK
Sbjct: 2708 TSSPEGPSPARPPRRRTSADVEIRGQGTGRPGQPPGPKVLRK 2749
Score = 35.8 bits (81), Expect = 0.062
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 22/133 (16%)
Query: 239 SPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPAS---------- 288
+P PT +R +L S S P A SS L +PS++P PAS
Sbjct: 1363 APMPTPTLVRPLLKLVHSPSPEVSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSSP 1422
Query: 289 -RMPLTSRSVPPGRGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMG-AT 346
P++S P +LP +S LP P++A +P+S L + G A
Sbjct: 1423 LASPVSSTVSVPLSSSLP---ISVPTTLPAPASA-------PLTIPISAPLTVSASGPAL 1472
Query: 347 RSNLQPPRKVAVP 359
+++ PP VP
Sbjct: 1473 LTSVTPPLAPVVP 1485
Score = 35.4 bits (80), Expect = 0.080
Identities = 75/305 (24%), Positives = 99/305 (32%), Gaps = 75/305 (24%)
Query: 86 AQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLT 145
A + L SA + L + P +T +L SP L P L PSP +
Sbjct: 1566 APAQASLLAPASSASQALATP-LAPMAAPQTAILAPSPAPPLAP----LPVLAPSPGA-A 1619
Query: 146 PRLRSNDRKGSVRALRATSGKR---------PSNMKRESPTCNLFPAS-KSPASSPLTRS 195
P L S+ V A +T G P+ + S T + PA SP SP +
Sbjct: 1620 PVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQ 1679
Query: 196 T-------PPVRGRAGPS-------GRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPP 241
T P G + PS G T+ L + S L P PP
Sbjct: 1680 TLALAPALAPTLGGSSPSQTLSLGTGNPQGPFPTQTLSLTPASSLVPTPAQTLSLAPGPP 1739
Query: 242 -----------GPPTPIRSVLAPQPS-------TSNSQRLPRPQGAAAKSSSQLPIPSAI 283
PP S + P P+ S+S L P + S P+P+
Sbjct: 1740 LGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSASLLAPASVQTLTLSPAPVPTLG 1799
Query: 284 PRPASRMPLTSRS-----------VPPGRGALP---------------PDSLSTRKGLPR 317
P A + L S V GA P PD+L+ R G P
Sbjct: 1800 PAAAQTLALAPASTQSPASQASSLVVSASGAAPLPVTMVSRLPVSKDEPDTLTLRSGPPS 1859
Query: 318 -PSTA 321
PSTA
Sbjct: 1860 PPSTA 1864
Score = 30.4 bits (67), Expect = 2.6
Identities = 34/109 (31%), Positives = 41/109 (37%), Gaps = 28/109 (25%)
Query: 238 PSPPGPPTPIRS----VLAPQPSTS-------NSQRLP------RPQGAAAKSSSQLPIP 280
P PP P P++ +L P P N+ R P RP S+ P P
Sbjct: 981 PDPPPRPKPVKMKVNRMLQPVPKQEGRTVVVVNNPRAPLGPVPVRPPPGPELSAQPTPGP 1040
Query: 281 SAIPRPASRM--------PLTSRSVPPGRGALP---PDSLSTRKGLPRP 318
PAS M PL S PPG LP P+S S + LP P
Sbjct: 1041 VPQVLPASLMVSASPAGPPLIPASRPPGPVLLPPLQPNSGSLPQVLPSP 1089
Score = 28.5 bits (62), Expect = 9.8
Identities = 74/277 (26%), Positives = 102/277 (36%), Gaps = 59/277 (21%)
Query: 118 VLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPT 177
V++ +P RD L V L + PSS P A RP+ PT
Sbjct: 1312 VVRQAP-RDGLTPVPPLAPAPRPPSSGLP---------------AVLNPRPTLTPGRLPT 1355
Query: 178 CNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLH 237
L A ++P +P T P ++ PS +AS AA L +S L +
Sbjct: 1356 PTLGTA-RAPMPTP-TLVRPLLKLVHSPSPEVSASAPG-AAPLTISSP-----LHVPSSL 1407
Query: 238 PSPPGPPTPIRS---VLAPQPST-----SNSQRLPRPQGAAAKSSSQLPIPSAIPRPASR 289
P P P PI + + +P ST S+S + P A +S+ L IP + P S
Sbjct: 1408 PGPASSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSA 1467
Query: 290 MP---LTSRSVP--------PGRGALPPD-----------SLSTRKGLPRPSTAGH--RV 325
LTS + P PG +L P L+T L T GH +
Sbjct: 1468 SGPALLTSVTPPLAPVVPAAPGPPSLAPSGASPSASALTLGLATAPSLSSSQTPGHPLLL 1527
Query: 326 RESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPGPT 362
+ VP LN V A L P +A P P+
Sbjct: 1528 APTSSHVP---GLNSTVAPACSPVLVPASALASPFPS 1561
>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
sapiens]
Length = 439
Score = 53.5 bits (127), Expect = 3e-07
Identities = 87/329 (26%), Positives = 117/329 (35%), Gaps = 37/329 (11%)
Query: 43 RRGLSHRSDPNAVAPAPQG------VRLSLGPL-SPEKLEEILDEANRLAAQLEQCALQD 95
R GL+H P +AP P R P+ SPE E ++A +CA+
Sbjct: 54 REGLAH--PPQGLAPPPTAGNRPHPTRKCTFPVPSPELGAGREGEVAGVSACGRRCAVLG 111
Query: 96 RESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKG 155
+A G R P R V D L T RS+P+ S++ L R+G
Sbjct: 112 VRAAARGQLNSRTAPRDRHRG-VGPDPGRETALGTATLSLRSSPTAGSVSTGLVGKQREG 170
Query: 156 SVRALRAT----SGKR---------PSNMKRESPTCNLFPASKSPASSPLTRSTPPVRG- 201
RA G R P+ + R +P P S SP RS PP R
Sbjct: 171 GNGPWRAPVFRLPGARLRLSSQLPSPTTLPRAAPLTPYRPGSPSPRGHSRLRSRPPTRAQ 230
Query: 202 -RAGPSGRAAASEETRAA-KLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSN 259
R G + + R +R G G TL P+ P P + PQ
Sbjct: 231 LRVGANPLSPVPARLRGCHSVRPEGGGVRSCRTLGCCPPTSPHQPPRLPVTPVPQSVALP 290
Query: 260 SQRLPRP--QGAAAKSSSQLPIPSAI-------PRPASRMPLTSRSVPPGRGALPPDSLS 310
S + RP GAA + S Q +A+ P P R P + P + P D+
Sbjct: 291 SLQSARPAAAGAAPRLSPQAARCTALSTEKPDRPGPPRRPPAPTPVSAPTLRSAPLDAHR 350
Query: 311 TRKGLPRPSTA--GHRVRESGHKVPVSQR 337
R+ LP S R S + VS R
Sbjct: 351 LRERLPESSVGPRAEPARRSRNAAMVSPR 379
Score = 33.9 bits (76), Expect = 0.23
Identities = 37/110 (33%), Positives = 42/110 (38%), Gaps = 16/110 (14%)
Query: 262 RLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPP-GRGAL---PPDSLSTRKG--- 314
RLP GA + SSQLP P+ +PR A P S P G L PP R G
Sbjct: 181 RLP---GARLRLSSQLPSPTTLPRAAPLTPYRPGSPSPRGHSRLRSRPPTRAQLRVGANP 237
Query: 315 ---LPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPGP 361
+P H VR G V + L S QPPR P P
Sbjct: 238 LSPVPARLRGCHSVRPEGGGVRSCRTLG---CCPPTSPHQPPRLPVTPVP 284
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 52.4 bits (124), Expect = 6e-07
Identities = 78/298 (26%), Positives = 116/298 (38%), Gaps = 48/298 (16%)
Query: 89 EQCALQDRESAGEGLGPRRVKPSPRRETFVLKDSPVRDL-LPTVNSLTRSTPSPSSLTPR 147
+QC D + LGP + S R TF DL L + +LT +TP+ SL
Sbjct: 234 KQCGQADTYQSP--LGPLFSQDSGRPFTFQ------SDLALLGLENLTTATPALGSLPA- 284
Query: 148 LRSNDRKGSVRALRATSGKRPSNMKRESPTC-NLFPASKSPASSPLTRSTPPVRGRAGPS 206
+G+V + P+ +R SPT + A PA +PL + P
Sbjct: 285 --GRGPRGTV------APATPTKPQRTSPTNPHQHMAVGGPAQTPLLPAKLSASNALDPM 336
Query: 207 GRAAASEETRAAKLRVSGSGEFVGLTL--KFLHPSPPGPPTPIRSVLAPQP------STS 258
A+ TR + + + + T K L P P T I + +P P S+
Sbjct: 337 LPASVGGSTRTPRPAAAQPSQKITATKIPKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSF 396
Query: 259 NSQRLPRPQGAAAKSSSQLPIPSAIPRPAS----RMPLTSRSVPPGRGALPPDSLSTRKG 314
LP + S P+P+ + RPA R P R PP LPP + S++K
Sbjct: 397 TKSALPTQKQVPPTSR---PVPARVSRPAEKPIQRNPGMPRPPPPSTRPLPPTTSSSKKP 453
Query: 315 LPRPSTAGHRV----------RESGHKVPVSQRLN---LPVMGATRSNLQPPRKVAVP 359
+P + ++ R S HK P L+ P G+TRS +PP + P
Sbjct: 454 IPTLARTEAKITSHASKPASARTSTHKPPPFTALSSSPAPTPGSTRST-RPPATMVPP 510
Score = 36.6 bits (83), Expect = 0.036
Identities = 75/334 (22%), Positives = 110/334 (32%), Gaps = 36/334 (10%)
Query: 37 TPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDR 96
TP KP R ++ AV Q PL P KL +N L L
Sbjct: 296 TPTKPQRTSPTNPHQHMAVGGPAQT------PLLPAKLSA----SNALDPMLPASV---- 341
Query: 97 ESAGEGLGPRRVKPSPRRE---TFVLKDSPVRDLLPTVNSLTRSTPSPSSLT-PRLRSND 152
G PR P ++ T + K P + P+ + + +P P+ T P +
Sbjct: 342 --GGSTRTPRPAAAQPSQKITATKIPKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKS 399
Query: 153 RKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASS----PLTRSTPPVRGRAGPSGR 208
+ + + TS P+ + R + P ++P P TR PP +
Sbjct: 400 ALPTQKQVPPTSRPVPARVSRPAEK----PIQRNPGMPRPPPPSTRPLPPTTSSSKKPIP 455
Query: 209 AAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQG 268
A E AK+ S T P P T + S AP P ++ S R P
Sbjct: 456 TLARTE---AKITSHASKPASART----STHKPPPFTALSSSPAPTPGSTRSTRPPATMV 508
Query: 269 AAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLP-RPSTAGHRVRE 327
+S A+P P S + + + S RK +P RP A V
Sbjct: 509 PPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKKAGPKSSPRKPVPLRPGKAARDVPL 568
Query: 328 SGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPGP 361
S S R P T + + P + P
Sbjct: 569 SDLTTRPSPRQPQPSQQTTPALVLAPAQFLSSSP 602
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 51.2 bits (121), Expect = 1e-06
Identities = 62/229 (27%), Positives = 90/229 (39%), Gaps = 45/229 (19%)
Query: 106 RRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSG 165
RR PSP + V P + RS+P +P L S RKGS +
Sbjct: 623 RRASPSPPPKRRVSHSPPPKQ---------RSSPVTKRRSPSLSSKHRKGSSPSRSTREA 673
Query: 166 KRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVR--GRAGPSGRAAASEETRAAKLRVS 223
+ P KR SP+ P ++P +S S PPVR + P R + S TR + RVS
Sbjct: 674 RSPQPNKRHSPS----PRPRAPQTS---SSPPPVRRGASSSPQRRQSPSPSTRPIR-RVS 725
Query: 224 GSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAI 283
+ E P I+ +P P + + ++++S S P P+A
Sbjct: 726 RTPE----------------PKKIKKAASPSPQSVR-------RVSSSRSVSGSPEPAAK 762
Query: 284 PRPASRMPLTSRSVPPGRGALPPDSLSTRKG-LPRPSTAGHRVRESGHK 331
PA P+ S+S P P + K P PS + +E G K
Sbjct: 763 KPPAPPSPVQSQS--PSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGGK 809
Score = 48.9 bits (115), Expect = 7e-06
Identities = 84/333 (25%), Positives = 126/333 (37%), Gaps = 64/333 (19%)
Query: 22 SPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEA 81
+P S V V+P + + H+ +P+P + P E E D+
Sbjct: 416 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSP-----APKPRKVELSESEEDKG 470
Query: 82 NRLAA-----QLEQCALQDRESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTR 136
++AA Q Q Q+++S+ + G R + +K+ V R
Sbjct: 471 GKMAAADSVQQRRQYRRQNQQSSSDS-GSSSSSEDERPKRSHVKNGEV-------GRRRR 522
Query: 137 STPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESP----------TCNLFPASKS 186
+PS S+ +P R ++ S R R S P +R SP T P ++
Sbjct: 523 HSPSRSA-SPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRT 581
Query: 187 PASSPLTRS------TPPVRGRAGPS---GRAAAS----EETRAA-----KLRVSGSGEF 228
P+ P RS +PP++ R PS R AS + RA+ K RVS S
Sbjct: 582 PSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHS--- 638
Query: 229 VGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPAS 288
P P +P+ +P S S ++ P + ++ S P P P
Sbjct: 639 ---------PPPKQRSSPVTKRRSPSLS-SKHRKGSSPSRSTREARSPQPNKRHSPSPRP 688
Query: 289 RMPLTSRSVPP-GRGALPPDSLSTRKGLPRPST 320
R P TS S PP RGA S R+ P PST
Sbjct: 689 RAPQTSSSPPPVRRGA---SSSPQRRQSPSPST 718
Score = 45.8 bits (107), Expect = 6e-05
Identities = 72/301 (23%), Positives = 110/301 (36%), Gaps = 52/301 (17%)
Query: 44 RGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGL 103
R HR+ + +PAP+ EK E+ + + ++++ ++Q+ S + L
Sbjct: 199 RSPRHRTKSRSPSPAPE---------KKEKTPELPEPS----VKVKEPSVQEATSTSDIL 245
Query: 104 G-------PRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRS---TPSPSSLTPRLRSNDR 153
P +PSP + + K+ S +RS + SPS PR R R
Sbjct: 246 KVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSR 305
Query: 154 KGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASE 213
S R RPS +R SP R TPP R P R + S
Sbjct: 306 SRSYSPRR-----RPSPRRRPSP----------------RRRTPPRRMPPPPRHRRSRSP 344
Query: 214 ETRAAKLRVSGSGEFVGLTLKFLHPSPPGPP----TPIRSVLAPQPSTSNSQRLPRPQGA 269
R + S SG + P PP +P R PS S +R RP
Sbjct: 345 VRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPP 404
Query: 270 AAKSSSQLPIPSAIPRPASRMPLTSRSVPPGR--GALPPDSLSTRKGLPRPSTAGHRVRE 327
A P+ P+ ++R + SV PGR G + + ++ P P+ +V
Sbjct: 405 ATPPPKTRHSPT--PQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVEL 462
Query: 328 S 328
S
Sbjct: 463 S 463
Score = 43.9 bits (102), Expect = 2e-04
Identities = 74/286 (25%), Positives = 105/286 (36%), Gaps = 46/286 (16%)
Query: 105 PRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATS 164
PRR+ P PR SPVR + SL+ S+ S SS R RS +K R +
Sbjct: 329 PRRMPPPPRHRR---SRSPVRRRRRSSASLSGSSSSSSS--SRSRSPPKKPPKR-----T 378
Query: 165 GKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSG 224
P +R SP+ + P + SP +TPP + R P+ + S TR +++ VS
Sbjct: 379 SSPPRKTRRLSPSAS--PPRRRHRPSP--PATPPPKTRHSPTPQQ--SNRTRKSRVSVSP 432
Query: 225 ---SGEFVGL--TLKFLHPSPPGPPTPIR----------------SVLAPQPSTSNSQRL 263
SG+ T K PSP P + SV + +Q+
Sbjct: 433 GRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQS 492
Query: 264 PRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPR------ 317
G+++ S + P S + R P R A P ++ PR
Sbjct: 493 SSDSGSSSSSEDERPKRSHVKNGEVGR---RRRHSPSRSASPSPRKRQKETSPRGRRRRS 549
Query: 318 PSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPGPTR 363
PS R R S P +R P R PP + P P R
Sbjct: 550 PSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRR 595
Score = 28.9 bits (63), Expect = 7.5
Identities = 48/215 (22%), Positives = 73/215 (33%), Gaps = 12/215 (5%)
Query: 150 SNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRA 209
S +++ R+ R + PS +R SP S S + T+S P
Sbjct: 162 SREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTP 221
Query: 210 AASEETRAAKLRVSGSGEFVGLTLKFLHPSP---PGPPTPIRSVLAPQPSTSNSQRLPRP 266
E + K LK P P P P+P ++ + + PR
Sbjct: 222 ELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKN---SKKEKEKEKTRPRS 278
Query: 267 QGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGL-PRPSTAGHRV 325
+ + S + RP R SRS P R P S R+ PR R
Sbjct: 279 RSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRH 338
Query: 326 RESGHKVPVSQRLNLPVMGATRS-----NLQPPRK 355
R S V +R + + G++ S + PP+K
Sbjct: 339 RRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKK 373
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 50.8 bits (120), Expect = 2e-06
Identities = 70/338 (20%), Positives = 124/338 (36%), Gaps = 25/338 (7%)
Query: 35 LVTPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQ 94
+ TP+ + + P P R SL P S E L + ++
Sbjct: 99 VTTPDTSTTQHNKVSTSPKITTAKPINPRPSLPPNSDTSKETSLTVNKETTVETKETTTT 158
Query: 95 DRESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLT--PRLRS-- 150
+++++ +G + K + +ET ++ + +DL PT L + TP + T P L +
Sbjct: 159 NKQTSTDG----KEKTTSAKETQSIEKTSAKDLAPTSKVLAKPTPKAETTTKGPALTTPK 214
Query: 151 NDRKGSVRALRATSGKRPS-NMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRA 209
+ + +T+ K P+ + +PT PA + S+P T P P+
Sbjct: 215 EPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTT 274
Query: 210 AASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIR----SVLAPQPSTSNSQRLPR 265
K + + T K P+ P P P + P+ T + + P
Sbjct: 275 PKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPA 334
Query: 266 P-QGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRPSTAGHR 324
P A ++ + P P+A +PA P T + P P + T P P+T
Sbjct: 335 PTTKEPAPTTPKEPAPTAPKKPA---PTTPKEPAP---TTPKEPAPTTTKEPSPTTPKEP 388
Query: 325 VRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPGPT 362
+ P + + P T+S P++ P PT
Sbjct: 389 APTTTKSAPTTTKEPAPT--TTKSAPTTPKE---PSPT 421
Score = 37.4 bits (85), Expect = 0.021
Identities = 70/341 (20%), Positives = 116/341 (34%), Gaps = 47/341 (13%)
Query: 37 TPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDR 96
TP++P + PAP + P +P+KL E +LA + +
Sbjct: 454 TPKEPAPTTTKKPAPTTPKEPAPTTPK-ETAPTTPKKLTPTTPE--KLAPTTPE---KPA 507
Query: 97 ESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGS 156
+ E L P +P T + P T P+P++ + ++ +
Sbjct: 508 PTTPEELAPT----TPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPA 563
Query: 157 VRALRATS-----GKRPSNMKRESPTCNLFPA--------SKSPASSPLTRSTPPVRGRA 203
+ T+ G P+ +K +PT PA +K P S+ + P
Sbjct: 564 PTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAPTTPKGT 623
Query: 204 GPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQP-----STS 258
P+ + T + G TLK P+P P P LAP ST+
Sbjct: 624 APTTPKEPAPTTPKEPAPTTPKGT-APTTLK--EPAPTTPKKPAPKELAPTTTKGPTSTT 680
Query: 259 NSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRP 318
+ + P A ++ + P P+ +PA P T + PP +ST P
Sbjct: 681 SDKPAPTTPKETAPTTPKEPAPTTPKKPA---PTTPETPPP-----TTSEVSTPTTTKEP 732
Query: 319 STAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVP 359
+T HK P L ++ P++ VP
Sbjct: 733 TTI--------HKSPDESTPELSAEPTPKALENSPKEPGVP 765
Score = 33.5 bits (75), Expect = 0.31
Identities = 41/195 (21%), Positives = 64/195 (32%), Gaps = 22/195 (11%)
Query: 129 PTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPA 188
PT +TP + T + A P+ K SPT PA +
Sbjct: 335 PTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK 394
Query: 189 SSPLTRSTP-PVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
S+P T P P ++ P+ S T P+P P P
Sbjct: 395 SAPTTTKEPAPTTTKSAPTTPKEPSPTTTK-------------------EPAPTTPKEPA 435
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPL-TSRSVPPGRGALPP 306
+ T+ + P A ++++ P P+ PA P T+ + P P
Sbjct: 436 PTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTP 495
Query: 307 DSLS-TRKGLPRPST 320
+ L+ T P P+T
Sbjct: 496 EKLAPTTPEKPAPTT 510
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 50.8 bits (120), Expect = 2e-06
Identities = 70/338 (20%), Positives = 124/338 (36%), Gaps = 25/338 (7%)
Query: 35 LVTPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQ 94
+ TP+ + + P P R SL P S E L + ++
Sbjct: 140 VTTPDTSTTQHNKVSTSPKITTAKPINPRPSLPPNSDTSKETSLTVNKETTVETKETTTT 199
Query: 95 DRESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLT--PRLRS-- 150
+++++ +G + K + +ET ++ + +DL PT L + TP + T P L +
Sbjct: 200 NKQTSTDG----KEKTTSAKETQSIEKTSAKDLAPTSKVLAKPTPKAETTTKGPALTTPK 255
Query: 151 NDRKGSVRALRATSGKRPS-NMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRA 209
+ + +T+ K P+ + +PT PA + S+P T P P+
Sbjct: 256 EPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTT 315
Query: 210 AASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIR----SVLAPQPSTSNSQRLPR 265
K + + T K P+ P P P + P+ T + + P
Sbjct: 316 PKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPA 375
Query: 266 P-QGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRPSTAGHR 324
P A ++ + P P+A +PA P T + P P + T P P+T
Sbjct: 376 PTTKEPAPTTPKEPAPTAPKKPA---PTTPKEPAP---TTPKEPAPTTTKEPSPTTPKEP 429
Query: 325 VRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPGPT 362
+ P + + P T+S P++ P PT
Sbjct: 430 APTTTKSAPTTTKEPAPT--TTKSAPTTPKE---PSPT 462
Score = 37.4 bits (85), Expect = 0.021
Identities = 70/341 (20%), Positives = 116/341 (34%), Gaps = 47/341 (13%)
Query: 37 TPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDR 96
TP++P + PAP + P +P+KL E +LA + +
Sbjct: 495 TPKEPAPTTTKKPAPTTPKEPAPTTPK-ETAPTTPKKLTPTTPE--KLAPTTPE---KPA 548
Query: 97 ESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGS 156
+ E L P +P T + P T P+P++ + ++ +
Sbjct: 549 PTTPEELAPT----TPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPA 604
Query: 157 VRALRATS-----GKRPSNMKRESPTCNLFPA--------SKSPASSPLTRSTPPVRGRA 203
+ T+ G P+ +K +PT PA +K P S+ + P
Sbjct: 605 PTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAPTTPKGT 664
Query: 204 GPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQP-----STS 258
P+ + T + G TLK P+P P P LAP ST+
Sbjct: 665 APTTPKEPAPTTPKEPAPTTPKGT-APTTLK--EPAPTTPKKPAPKELAPTTTKGPTSTT 721
Query: 259 NSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRP 318
+ + P A ++ + P P+ +PA P T + PP +ST P
Sbjct: 722 SDKPAPTTPKETAPTTPKEPAPTTPKKPA---PTTPETPPP-----TTSEVSTPTTTKEP 773
Query: 319 STAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVP 359
+T HK P L ++ P++ VP
Sbjct: 774 TTI--------HKSPDESTPELSAEPTPKALENSPKEPGVP 806
Score = 33.5 bits (75), Expect = 0.31
Identities = 41/195 (21%), Positives = 64/195 (32%), Gaps = 22/195 (11%)
Query: 129 PTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPA 188
PT +TP + T + A P+ K SPT PA +
Sbjct: 376 PTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK 435
Query: 189 SSPLTRSTP-PVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
S+P T P P ++ P+ S T P+P P P
Sbjct: 436 SAPTTTKEPAPTTTKSAPTTPKEPSPTTTK-------------------EPAPTTPKEPA 476
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPL-TSRSVPPGRGALPP 306
+ T+ + P A ++++ P P+ PA P T+ + P P
Sbjct: 477 PTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTP 536
Query: 307 DSLS-TRKGLPRPST 320
+ L+ T P P+T
Sbjct: 537 EKLAPTTPEKPAPTT 551
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 50.8 bits (120), Expect = 2e-06
Identities = 70/338 (20%), Positives = 124/338 (36%), Gaps = 25/338 (7%)
Query: 35 LVTPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQ 94
+ TP+ + + P P R SL P S E L + ++
Sbjct: 192 VTTPDTSTTQHNKVSTSPKITTAKPINPRPSLPPNSDTSKETSLTVNKETTVETKETTTT 251
Query: 95 DRESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLT--PRLRS-- 150
+++++ +G + K + +ET ++ + +DL PT L + TP + T P L +
Sbjct: 252 NKQTSTDG----KEKTTSAKETQSIEKTSAKDLAPTSKVLAKPTPKAETTTKGPALTTPK 307
Query: 151 NDRKGSVRALRATSGKRPS-NMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRA 209
+ + +T+ K P+ + +PT PA + S+P T P P+
Sbjct: 308 EPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTT 367
Query: 210 AASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIR----SVLAPQPSTSNSQRLPR 265
K + + T K P+ P P P + P+ T + + P
Sbjct: 368 PKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPA 427
Query: 266 P-QGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRPSTAGHR 324
P A ++ + P P+A +PA P T + P P + T P P+T
Sbjct: 428 PTTKEPAPTTPKEPAPTAPKKPA---PTTPKEPAP---TTPKEPAPTTTKEPSPTTPKEP 481
Query: 325 VRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPGPT 362
+ P + + P T+S P++ P PT
Sbjct: 482 APTTTKSAPTTTKEPAPT--TTKSAPTTPKE---PSPT 514
Score = 37.4 bits (85), Expect = 0.021
Identities = 70/341 (20%), Positives = 116/341 (34%), Gaps = 47/341 (13%)
Query: 37 TPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDR 96
TP++P + PAP + P +P+KL E +LA + +
Sbjct: 547 TPKEPAPTTTKKPAPTTPKEPAPTTPK-ETAPTTPKKLTPTTPE--KLAPTTPE---KPA 600
Query: 97 ESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGS 156
+ E L P +P T + P T P+P++ + ++ +
Sbjct: 601 PTTPEELAPT----TPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPA 656
Query: 157 VRALRATS-----GKRPSNMKRESPTCNLFPA--------SKSPASSPLTRSTPPVRGRA 203
+ T+ G P+ +K +PT PA +K P S+ + P
Sbjct: 657 PTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAPTTPKGT 716
Query: 204 GPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQP-----STS 258
P+ + T + G TLK P+P P P LAP ST+
Sbjct: 717 APTTPKEPAPTTPKEPAPTTPKGT-APTTLK--EPAPTTPKKPAPKELAPTTTKGPTSTT 773
Query: 259 NSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRP 318
+ + P A ++ + P P+ +PA P T + PP +ST P
Sbjct: 774 SDKPAPTTPKETAPTTPKEPAPTTPKKPA---PTTPETPPP-----TTSEVSTPTTTKEP 825
Query: 319 STAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVP 359
+T HK P L ++ P++ VP
Sbjct: 826 TTI--------HKSPDESTPELSAEPTPKALENSPKEPGVP 858
Score = 33.5 bits (75), Expect = 0.31
Identities = 41/195 (21%), Positives = 64/195 (32%), Gaps = 22/195 (11%)
Query: 129 PTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPA 188
PT +TP + T + A P+ K SPT PA +
Sbjct: 428 PTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK 487
Query: 189 SSPLTRSTP-PVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
S+P T P P ++ P+ S T P+P P P
Sbjct: 488 SAPTTTKEPAPTTTKSAPTTPKEPSPTTTK-------------------EPAPTTPKEPA 528
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPL-TSRSVPPGRGALPP 306
+ T+ + P A ++++ P P+ PA P T+ + P P
Sbjct: 529 PTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTP 588
Query: 307 DSLS-TRKGLPRPST 320
+ L+ T P P+T
Sbjct: 589 EKLAPTTPEKPAPTT 603
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 50.8 bits (120), Expect = 2e-06
Identities = 70/338 (20%), Positives = 124/338 (36%), Gaps = 25/338 (7%)
Query: 35 LVTPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQ 94
+ TP+ + + P P R SL P S E L + ++
Sbjct: 233 VTTPDTSTTQHNKVSTSPKITTAKPINPRPSLPPNSDTSKETSLTVNKETTVETKETTTT 292
Query: 95 DRESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLT--PRLRS-- 150
+++++ +G + K + +ET ++ + +DL PT L + TP + T P L +
Sbjct: 293 NKQTSTDG----KEKTTSAKETQSIEKTSAKDLAPTSKVLAKPTPKAETTTKGPALTTPK 348
Query: 151 NDRKGSVRALRATSGKRPS-NMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRA 209
+ + +T+ K P+ + +PT PA + S+P T P P+
Sbjct: 349 EPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTT 408
Query: 210 AASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIR----SVLAPQPSTSNSQRLPR 265
K + + T K P+ P P P + P+ T + + P
Sbjct: 409 PKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPA 468
Query: 266 P-QGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRPSTAGHR 324
P A ++ + P P+A +PA P T + P P + T P P+T
Sbjct: 469 PTTKEPAPTTPKEPAPTAPKKPA---PTTPKEPAP---TTPKEPAPTTTKEPSPTTPKEP 522
Query: 325 VRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPGPT 362
+ P + + P T+S P++ P PT
Sbjct: 523 APTTTKSAPTTTKEPAPT--TTKSAPTTPKE---PSPT 555
Score = 37.4 bits (85), Expect = 0.021
Identities = 70/341 (20%), Positives = 116/341 (34%), Gaps = 47/341 (13%)
Query: 37 TPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDR 96
TP++P + PAP + P +P+KL E +LA + +
Sbjct: 588 TPKEPAPTTTKKPAPTTPKEPAPTTPK-ETAPTTPKKLTPTTPE--KLAPTTPE---KPA 641
Query: 97 ESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGS 156
+ E L P +P T + P T P+P++ + ++ +
Sbjct: 642 PTTPEELAPT----TPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPA 697
Query: 157 VRALRATS-----GKRPSNMKRESPTCNLFPA--------SKSPASSPLTRSTPPVRGRA 203
+ T+ G P+ +K +PT PA +K P S+ + P
Sbjct: 698 PTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAPTTPKGT 757
Query: 204 GPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQP-----STS 258
P+ + T + G TLK P+P P P LAP ST+
Sbjct: 758 APTTPKEPAPTTPKEPAPTTPKGT-APTTLK--EPAPTTPKKPAPKELAPTTTKGPTSTT 814
Query: 259 NSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRP 318
+ + P A ++ + P P+ +PA P T + PP +ST P
Sbjct: 815 SDKPAPTTPKETAPTTPKEPAPTTPKKPA---PTTPETPPP-----TTSEVSTPTTTKEP 866
Query: 319 STAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVP 359
+T HK P L ++ P++ VP
Sbjct: 867 TTI--------HKSPDESTPELSAEPTPKALENSPKEPGVP 899
Score = 33.5 bits (75), Expect = 0.31
Identities = 41/195 (21%), Positives = 64/195 (32%), Gaps = 22/195 (11%)
Query: 129 PTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPA 188
PT +TP + T + A P+ K SPT PA +
Sbjct: 469 PTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK 528
Query: 189 SSPLTRSTP-PVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
S+P T P P ++ P+ S T P+P P P
Sbjct: 529 SAPTTTKEPAPTTTKSAPTTPKEPSPTTTK-------------------EPAPTTPKEPA 569
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPL-TSRSVPPGRGALPP 306
+ T+ + P A ++++ P P+ PA P T+ + P P
Sbjct: 570 PTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTP 629
Query: 307 DSLS-TRKGLPRPST 320
+ L+ T P P+T
Sbjct: 630 EKLAPTTPEKPAPTT 644
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 48.1 bits (113), Expect = 1e-05
Identities = 56/213 (26%), Positives = 77/213 (36%), Gaps = 33/213 (15%)
Query: 105 PRRVKP-SPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRAT 163
P V P SP+ T K++P P+V +L P++ P+ AL T
Sbjct: 867 PSAVTPLSPKGVTLPPKETPT----PSVVNLPFPKEGPATPAPK--------QAPALSMT 914
Query: 164 SGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVS 223
S R +P PAS SP +P + P + GP+ + T A S
Sbjct: 915 SSS--PKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPS 972
Query: 224 GSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAI 283
G PSP G PTP A PS P P+GA P P A+
Sbjct: 973 PKGGPAT-------PSPKGAPTP---PAATPPSPKGGPATPSPKGA--------PTPPAV 1014
Query: 284 PRPASRMPLTSRSVPPGRGALPPDSLSTRKGLP 316
P+ + + P G P + + KG P
Sbjct: 1015 TPPSPKGSPAATPFPKGASTPPAATPPSPKGSP 1047
Score = 41.2 bits (95), Expect = 0.001
Identities = 57/226 (25%), Positives = 81/226 (35%), Gaps = 29/226 (12%)
Query: 105 PRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATS 164
P PSP+ +P PT + T +P TP + +
Sbjct: 943 PAATPPSPKGGPA----TPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKG 998
Query: 165 GKR-PSNMKRESPTCNLFPASK-SPASSPLTR--STPPVRGRAGPSGRAAASEETRAAKL 220
G PS +P P+ K SPA++P + STPP P G AA+ + A
Sbjct: 999 GPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPT 1058
Query: 221 RVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQ-LPI 279
+ + PSP G P AP P + P P+G A S + P+
Sbjct: 1059 TPAAT-----------LPSPKGGPATPSLKGAPTPPAATP---PSPKGGPATPSPKGAPM 1104
Query: 280 PSAIPRPASRMPLTS---RSVPPGRGALPPDSLSTRKGLPRPSTAG 322
P A P+ + L + + P A PP S + GL P G
Sbjct: 1105 PPAATPPSPKGGLATPPHKGAPTTPAATPP---SPKGGLATPPPKG 1147
Score = 40.8 bits (94), Expect = 0.002
Identities = 62/225 (27%), Positives = 78/225 (34%), Gaps = 40/225 (17%)
Query: 100 GEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRA 159
G + P PSP+ +P PT + T +P TP KG+
Sbjct: 1101 GAPMPPAATPPSPKGGLA----TPPHKGAPTTPAATPPSPKGGLATP-----PPKGAPTT 1151
Query: 160 LRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAK 219
AT P + K T P K ++P P G A PS + A T A
Sbjct: 1152 PAAT----PPSPKGGLAT----PPPKGAPTTPAATPPSPKGGLATPSPKGAP---TTPAA 1200
Query: 220 LRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPI 279
S G GL PSP G PT + A PS P P+GA ++ P
Sbjct: 1201 TPPSPKG---GLAT----PSPKGAPT---TPAATPPSPKGGLATPSPKGAPTTPAATPPS 1250
Query: 280 PSAIPR--PASRMPLTSRSVPP---GRGALPPDSLSTRKGLPRPS 319
P P P P + PP G A PP KG P P+
Sbjct: 1251 PKGGPATPPPKGAPTPPAATPPSLKGGLATPP-----HKGAPNPA 1290
Score = 38.5 bits (88), Expect = 0.009
Identities = 70/340 (20%), Positives = 123/340 (36%), Gaps = 42/340 (12%)
Query: 19 GGLSPSDSREEEDITVLVTP---EKPLRRGLSHRSDPNAV--APAPQGVRLSLG------ 67
GG + S+ + + + P E P + ++ S P PAP G
Sbjct: 1454 GGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSP 1513
Query: 68 ---PLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVL--KDS 122
P +P + + L ++ L +E+ + P PSP++ + K++
Sbjct: 1514 KEVPATPSSRRDPIAPTATLLSKKTPATLAPKEAL---IPPAMTVPSPKKTPAIPTPKEA 1570
Query: 123 PVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFP 182
P +S TPS P + +V + P + SP P
Sbjct: 1571 PATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKG--P 1628
Query: 183 ASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVS-GSGEFVGLT-LKFLHPSP 240
A+ +P +P + P + P+ A+ + + A + S G G T LK + +P
Sbjct: 1629 ATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTALKEVLVAP 1688
Query: 241 PGPPTPIRSV---LAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRP----------- 286
TPI + PQ S++ P +AK+ S+ P+ + P P
Sbjct: 1689 APESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGPLSTVAPAPLLPVQKDSSKT 1748
Query: 287 -----ASRMPLTSRSVPPGRGALPPDSLSTRKGLPRPSTA 321
AS P + P + + P + + K LP+P +A
Sbjct: 1749 AKGKDASHSPKGPLAPPESKASTPLTAAAFEKVLPKPESA 1788
Score = 37.4 bits (85), Expect = 0.021
Identities = 50/201 (24%), Positives = 69/201 (34%), Gaps = 26/201 (12%)
Query: 129 PTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPA 188
PT + T +P TP KG+ AT + SP + +P
Sbjct: 1195 PTTPAATPPSPKGGLATP-----SPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPP 1249
Query: 189 SSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPP--TP 246
S +TPP +G P S + A G+ +T PSP G P +P
Sbjct: 1250 SPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVT----PPSPKGGPATSP 1305
Query: 247 IRSVLAPQ----PSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG-- 300
+ P PS S P P+GA + P P P +P T+ S G
Sbjct: 1306 PKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTP----TLPATTPSSKGGPT 1361
Query: 301 -----RGALPPDSLSTRKGLP 316
G PP + + KG P
Sbjct: 1362 TPSSKEGPTPPAATPSHKGGP 1382
Score = 36.2 bits (82), Expect = 0.047
Identities = 81/353 (22%), Positives = 113/353 (32%), Gaps = 54/353 (15%)
Query: 38 PEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRE 97
P P +G + P A P+P+G GP +P + A + L
Sbjct: 1071 PATPSLKGAP--TPPAATPPSPKG-----GPATPSPKGAPMPPA--ATPPSPKGGLATPP 1121
Query: 98 SAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSV 157
G P PSP+ +P PT + T +P TP KG+
Sbjct: 1122 HKGAPTTPAATPPSPKGGLA----TPPPKGAPTTPAATPPSPKGGLATP-----PPKGAP 1172
Query: 158 RALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRA 217
AT + SP + +P S +TP +G P+ AA +
Sbjct: 1173 TTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKG--APTTPAATPPSPKG 1230
Query: 218 AKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRL-------------- 263
S G T PSP G P AP P + L
Sbjct: 1231 GLATPSPKG--APTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPN 1288
Query: 264 ------PRPQGAAAKSSSQ-LPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLS--TRKG 314
P P+G A S + P P A P+ P S PP +GA P +++ + KG
Sbjct: 1289 PAVVTPPSPKGGPATSPPKGAPTPPAATPPS---PKGSPGTPPPKGAPTPPAVTPPSPKG 1345
Query: 315 LP-----RPSTAGHRVRESGHKVPVSQRLNLPVMGA-TRSNLQPPRKVAVPGP 361
P PS+ G S + P G + P R A+P P
Sbjct: 1346 TPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSP 1398
Score = 34.3 bits (77), Expect = 0.18
Identities = 65/287 (22%), Positives = 103/287 (35%), Gaps = 90/287 (31%)
Query: 120 KDSPVRD-------LLPTVNSLTRSTPSPSS---------LTPRLRSNDRKGSVRALRAT 163
K+ PV++ L+PT + PSP + L P + + S+
Sbjct: 686 KNHPVKEGTLTTLPLVPTASENCPVAPSPQNTCAPLATLVLAPEIPKSVPSPSL----PP 741
Query: 164 SGKRPSNMKRE--SPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLR 221
+G P K + S T L P + SP P S A+A+ ++
Sbjct: 742 AGTPPGTKKVDGISHTSALAPVASSPKECPTEDSG------------ASATASSKGTLTY 789
Query: 222 VSGSGEFVGLTLKFLHPSPP------GPPTPIRSVLAP---------------------Q 254
++ S +G+++ PP GP TPI ++ +P
Sbjct: 790 LADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDS 849
Query: 255 PSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKG 314
P+T++S P P+GA P PSA+ PL+ + V LPP K
Sbjct: 850 PATTHSPTPPSPKGA--------PTPSAV------TPLSPKGV-----TLPP------KE 884
Query: 315 LPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPGP 361
P PS + G P ++ P + T S+ P + A P P
Sbjct: 885 TPTPSVVNLPFPKEGPATPAPKQ--APALSMTSSS--PKKARATPAP 927
Score = 29.3 bits (64), Expect = 5.8
Identities = 57/271 (21%), Positives = 89/271 (32%), Gaps = 58/271 (21%)
Query: 105 PRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATS 164
P PSP+ + +P PT S ++ P+P + TP KG +
Sbjct: 1336 PAVTPPSPKGTPTLPATTPSSKGGPTTPS-SKEGPTPPAATP-----SHKGGPAMTPPSP 1389
Query: 165 GKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSG 224
+ P+ P+ K +SP P + A P R A+ ++
Sbjct: 1390 KRGPA-----------IPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKG------- 1431
Query: 225 SGEFVGLTLKFLHPSPPGPPTPIRSVLAPQ-------PSTSNSQRLPRPQGAAAKSSSQL 277
LT P TP+ AP P+T +S+ P S +
Sbjct: 1432 -----DLT--------PPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEP 1478
Query: 278 PIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQR 337
P P + +S + P G LP S+ K +P S + P++
Sbjct: 1479 PAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVP--------ATPSSRRDPIAPT 1530
Query: 338 LNL-----PVMGATRSNLQPPRKVAVPGPTR 363
L P A + L PP + VP P +
Sbjct: 1531 ATLLSKKTPATLAPKEALIPP-AMTVPSPKK 1560
>gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens]
Length = 739
Score = 47.8 bits (112), Expect = 2e-05
Identities = 94/375 (25%), Positives = 130/375 (34%), Gaps = 87/375 (23%)
Query: 5 EEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQGVRL 64
+ED+ + DE DF LS S S ED V P R ++ + N P +
Sbjct: 25 KEDILLLADEKFDFD-LSLSSSSANEDDEVFFGPFGHKERCIAASLELNNPVPEQPPLPT 83
Query: 65 S-----LGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPR------------- 106
S PL+ EK E+ EA+ LA +E + A + PR
Sbjct: 84 SESPFAWSPLAGEKFVEVYKEAHLLALHIESSSRNQAAQAAKPEDPRSQGVERFIQESKL 143
Query: 107 ---------RVKPSP---RRETFVLKDSPVRDLLPTVNS--LTRSTPSPSSLTPRLRSND 152
+K SP +RET+ L DSP+ L P V L S+P+ S + R
Sbjct: 144 KINLFEKEKEMKKSPTSLKRETYYLSDSPL--LGPPVGEPRLLASSPALPSSGAQARLTR 201
Query: 153 RKGSVRALRATSGKRPSNMKRESPTCNL---FPASKSPASSPLTRSTPPVRGRAGPSGRA 209
G + A + RES T + + P + L VRGR+ P
Sbjct: 202 APGPPHSAHA--------LPRESCTAHAASQAATQRKPGTKLLLPRAASVRGRSIPGAAE 253
Query: 210 AASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGP-------------------PTP---- 246
+E A+ R E + + + P P P P P
Sbjct: 254 KPKKEIPASPSRTKIPAE--KESHRDVLPDKPAPGAVNVPAAGSHLGQGKRAIPVPNKLG 311
Query: 247 IRSVLAPQP-STSN--------------SQRLPRPQGAAAKSSSQLPIPSAIPRPASRMP 291
++ L P STSN S P AKSS IP+ RP S +
Sbjct: 312 LKKTLLKAPGSTSNLARKSSSGPVWSGASSACTSPAVGKAKSSEFASIPANSSRPLSNIS 371
Query: 292 LTSRSVPPG-RGALP 305
+ R P R ALP
Sbjct: 372 KSGRMGPAMLRPALP 386
Score = 28.5 bits (62), Expect = 9.8
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 234 KFLHPSPPGPPTP-IRSVLAPQPSTS------NSQRLPRPQGAAAKSSSQLPIPSAIPRP 286
KF P TP + PQ TS +S + R G A +S SA+P P
Sbjct: 474 KFSIGDSPDSSTPKLSRAQRPQSCTSVGRVTVHSTPVRRSSGPAPQSLLSARRVSALPTP 533
Query: 287 ASRM-----PLTSRSVPPGRGALPPDSLSTRKGLPRPSTA--GHRVRESGHK 331
ASR P+T +++P G+ R PR ++A RES K
Sbjct: 534 ASRRCSGLPPMTPKTMPRAVGSPLCVPARRRSSEPRKNSAMRTEPTRESNRK 585
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 47.0 bits (110), Expect = 3e-05
Identities = 58/221 (26%), Positives = 80/221 (36%), Gaps = 58/221 (26%)
Query: 139 PSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPP 198
P P+SL+PR AL + G++P PA ++ P++ PP
Sbjct: 83 PRPASLSPRA----------ALASAPGQKPQ------------PARQAQLPRPVSGVRPP 120
Query: 199 VRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTS 258
RGR G S A A R G ++ ++PSPP PP PI + A +
Sbjct: 121 PRGRVGLS---QAPGRPLGACARAKG--------IRLVNPSPPRPPEPIPASAAVTSGLT 169
Query: 259 ----NSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGA------LPPDS 308
N+ P PQ + IP R A+ P VP RG+ PP+
Sbjct: 170 ARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVPFCRGSSGLSVPTPPEH 229
Query: 309 LSTR-------KGLPR--------PSTAGHRVRESGHKVPV 334
R + LPR PST S H P+
Sbjct: 230 AGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSSHSAPL 270
Score = 35.8 bits (81), Expect = 0.062
Identities = 64/234 (27%), Positives = 83/234 (35%), Gaps = 37/234 (15%)
Query: 104 GPRRVKPSPRRETFVLKDS--------PVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKG 155
GP++ + S R + KD P R +P R + S TP + R+
Sbjct: 180 GPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVP----FCRGSSGLSVPTPPEHAGGRRK 235
Query: 156 SVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAA-ASEE 214
R R S+ E P+ A+ S S+PL P+R PS R A A E
Sbjct: 236 KFTRTRPLP--RTSSFLSEVPSTRPLCATSSSHSAPLPFFWSPLRN---PSPRPAPACGE 290
Query: 215 TRAAKLRV-------SGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQ 267
R +L S SG G K H + P PP P A P N R
Sbjct: 291 LRLGRLSPPRADTGGSSSGGCSGPDSK--HRTLPAPPAPTAWPAAGAPGAPNPAESRRGP 348
Query: 268 GAAAKSSSQLPIPSAI-------PRPASRMPLTSRSVPPGRGALPPDSLSTRKG 314
G A S+ P + R S +P S PGR P S S +KG
Sbjct: 349 GPAQGPPSRRDEPRRVVIAARECGREGSELP-PSGEETPGRRKSP--SQSCKKG 399
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 47.0 bits (110), Expect = 3e-05
Identities = 58/221 (26%), Positives = 80/221 (36%), Gaps = 58/221 (26%)
Query: 139 PSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPP 198
P P+SL+PR AL + G++P PA ++ P++ PP
Sbjct: 83 PRPASLSPRA----------ALASAPGQKPQ------------PARQAQLPRPVSGVRPP 120
Query: 199 VRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTS 258
RGR G S A A R G ++ ++PSPP PP PI + A +
Sbjct: 121 PRGRVGLS---QAPGRPLGACARAKG--------IRLVNPSPPRPPEPIPASAAVTSGLT 169
Query: 259 ----NSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGA------LPPDS 308
N+ P PQ + IP R A+ P VP RG+ PP+
Sbjct: 170 ARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVPFCRGSSGLSVPTPPEH 229
Query: 309 LSTR-------KGLPR--------PSTAGHRVRESGHKVPV 334
R + LPR PST S H P+
Sbjct: 230 AGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSSHSAPL 270
Score = 35.8 bits (81), Expect = 0.062
Identities = 64/234 (27%), Positives = 83/234 (35%), Gaps = 37/234 (15%)
Query: 104 GPRRVKPSPRRETFVLKDS--------PVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKG 155
GP++ + S R + KD P R +P R + S TP + R+
Sbjct: 180 GPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVP----FCRGSSGLSVPTPPEHAGGRRK 235
Query: 156 SVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAA-ASEE 214
R R S+ E P+ A+ S S+PL P+R PS R A A E
Sbjct: 236 KFTRTRPLP--RTSSFLSEVPSTRPLCATSSSHSAPLPFFWSPLRN---PSPRPAPACGE 290
Query: 215 TRAAKLRV-------SGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQ 267
R +L S SG G K H + P PP P A P N R
Sbjct: 291 LRLGRLSPPRADTGGSSSGGCSGPDSK--HRTLPAPPAPTAWPAAGAPGAPNPAESRRGP 348
Query: 268 GAAAKSSSQLPIPSAI-------PRPASRMPLTSRSVPPGRGALPPDSLSTRKG 314
G A S+ P + R S +P S PGR P S S +KG
Sbjct: 349 GPAQGPPSRRDEPRRVVIAARECGREGSELP-PSGEETPGRRKSP--SQSCKKG 399
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 47.0 bits (110), Expect = 3e-05
Identities = 58/221 (26%), Positives = 80/221 (36%), Gaps = 58/221 (26%)
Query: 139 PSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPP 198
P P+SL+PR AL + G++P PA ++ P++ PP
Sbjct: 83 PRPASLSPRA----------ALASAPGQKPQ------------PARQAQLPRPVSGVRPP 120
Query: 199 VRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTS 258
RGR G S A A R G ++ ++PSPP PP PI + A +
Sbjct: 121 PRGRVGLS---QAPGRPLGACARAKG--------IRLVNPSPPRPPEPIPASAAVTSGLT 169
Query: 259 ----NSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGA------LPPDS 308
N+ P PQ + IP R A+ P VP RG+ PP+
Sbjct: 170 ARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVPFCRGSSGLSVPTPPEH 229
Query: 309 LSTR-------KGLPR--------PSTAGHRVRESGHKVPV 334
R + LPR PST S H P+
Sbjct: 230 AGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSSHSAPL 270
Score = 35.8 bits (81), Expect = 0.062
Identities = 64/234 (27%), Positives = 83/234 (35%), Gaps = 37/234 (15%)
Query: 104 GPRRVKPSPRRETFVLKDS--------PVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKG 155
GP++ + S R + KD P R +P R + S TP + R+
Sbjct: 180 GPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVP----FCRGSSGLSVPTPPEHAGGRRK 235
Query: 156 SVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAA-ASEE 214
R R S+ E P+ A+ S S+PL P+R PS R A A E
Sbjct: 236 KFTRTRPLP--RTSSFLSEVPSTRPLCATSSSHSAPLPFFWSPLRN---PSPRPAPACGE 290
Query: 215 TRAAKLRV-------SGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQ 267
R +L S SG G K H + P PP P A P N R
Sbjct: 291 LRLGRLSPPRADTGGSSSGGCSGPDSK--HRTLPAPPAPTAWPAAGAPGAPNPAESRRGP 348
Query: 268 GAAAKSSSQLPIPSAI-------PRPASRMPLTSRSVPPGRGALPPDSLSTRKG 314
G A S+ P + R S +P S PGR P S S +KG
Sbjct: 349 GPAQGPPSRRDEPRRVVIAARECGREGSELP-PSGEETPGRRKSP--SQSCKKG 399
>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
sapiens]
Length = 1038
Score = 47.0 bits (110), Expect = 3e-05
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 238 PSPPG---PPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLT- 293
PSP G P P R + P+P+ + Q P P G + +SQ P P++ PR R PL+
Sbjct: 729 PSPGGDDKPQVPPRVPIPPRPTRPHVQLSPAPPG--EEETSQWPGPASPPRVPPREPLSP 786
Query: 294 ------SRSVPPGRGALPPDSLSTRKGLPRPST 320
S VPPG LPP LS+ G P+T
Sbjct: 787 QGSRTPSPLVPPGSSPLPP-RLSSSPGKTMPTT 818
>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
sapiens]
Length = 1086
Score = 47.0 bits (110), Expect = 3e-05
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 238 PSPPG---PPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLT- 293
PSP G P P R + P+P+ + Q P P G + +SQ P P++ PR R PL+
Sbjct: 807 PSPGGDDKPQVPPRVPIPPRPTRPHVQLSPAPPG--EEETSQWPGPASPPRVPPREPLSP 864
Query: 294 ------SRSVPPGRGALPPDSLSTRKGLPRPST 320
S VPPG LPP LS+ G P+T
Sbjct: 865 QGSRTPSPLVPPGSSPLPP-RLSSSPGKTMPTT 896
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 47.0 bits (110), Expect = 3e-05
Identities = 79/319 (24%), Positives = 124/319 (38%), Gaps = 43/319 (13%)
Query: 68 PLSPEKLEEILDE---ANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLKDSPV 124
PL + EE L AN+LA ++E A A E + + T V ++S
Sbjct: 425 PLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDD----RSEEEKYTAVQRNSSE 480
Query: 125 RDLLPTVNSLTRSTPSPSSLTPRLRS--NDRKGSVRALRATSGKRPSNMKRESPTCNLFP 182
R+ ++N+ P + S + R+ S R + SG PS + S T + P
Sbjct: 481 REG-HSINTRENKYIPPGQRNREVISWGSGRQNSPRMGQPGSGSMPS--RSTSHTSDFNP 537
Query: 183 ASKS-----------PASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGL 231
S S P+ P S PP R ++GP+ S RAA S
Sbjct: 538 NSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPN-----SLPPRAATPTRPPSRPPSRP 592
Query: 232 TLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMP 291
+ HPS G P P+ ++ P +S+ PR A + + + +S +
Sbjct: 593 SRPPSHPSAHGSPAPVSTM----PKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLE 648
Query: 292 LTSRSVPPGRGALPPDS---------LSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPV 342
S + PP A PP + S G+PR S HR R S + + + PV
Sbjct: 649 FVSHN-PPSEAATPPVARTSPSGGTWSSVVSGVPRLSPKTHRPR-SPRQNSIGNTPSGPV 706
Query: 343 MGATRSNLQPPRKVAVPGP 361
+ + ++ + P VA+P P
Sbjct: 707 LASPQAGIIPTEAVAMPIP 725
Score = 43.1 bits (100), Expect = 4e-04
Identities = 65/256 (25%), Positives = 99/256 (38%), Gaps = 30/256 (11%)
Query: 104 GPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSND--RKGSVRALR 161
GP + P T P R P + +P+P S P+ S++ + S +A R
Sbjct: 570 GPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQR 629
Query: 162 ATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLR 221
R S R S + L S +P P +TPPV R PSG +S
Sbjct: 630 HPRNHRVS-AGRGSISSGLEFVSHNP---PSEAATPPV-ARTSPSGGTWSSV-------- 676
Query: 222 VSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQ-GAAAKSSSQLPIP 280
VSG + L P P +P ++ + PS L PQ G + +PIP
Sbjct: 677 VSG--------VPRLSPKTHRPRSPRQNSIGNTPS---GPVLASPQAGIIPTEAVAMPIP 725
Query: 281 SAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNL 340
+A P PAS P ++R+V P A R+ P + + E+ ++ +
Sbjct: 726 AASPTPAS--PASNRAVTPSSEAKDSRLQDQRQNSPAGNKENIKPNETSPSFSKAENKGI 783
Query: 341 -PVMGATRSNLQPPRK 355
PV+ R + +K
Sbjct: 784 SPVVSEHRKQIDDLKK 799
Score = 29.3 bits (64), Expect = 5.8
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 238 PSPPGPPTPIRSVLAPQ-PSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRS 296
P P T R A + P + QR R G ++ P PSA P P P
Sbjct: 8 PRSPAVATESRRFAAARWPGWRSLQRPARRSGRGGGGAAPGPYPSAAPPPPGPGP----- 62
Query: 297 VPPGRGALPPDS 308
PP R + PP +
Sbjct: 63 -PPSRQSSPPSA 73
Score = 28.5 bits (62), Expect = 9.8
Identities = 57/279 (20%), Positives = 96/279 (34%), Gaps = 29/279 (10%)
Query: 50 SDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVK 109
+ P A + V + + SP + A +++ + LQD+ +K
Sbjct: 708 ASPQAGIIPTEAVAMPIPAASPTPASPASNRAVTPSSEAKDSRLQDQRQNSPAGNKENIK 767
Query: 110 PSPRRETFVLKD----SPV--------RDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSV 157
P+ +F + SPV DL N S S +L + +R+G
Sbjct: 768 PNETSPSFSKAENKGISPVVSEHRKQIDDLKKFKNDFRLQPSSTSESMDQLLNKNREGEK 827
Query: 158 -RAL---RATSGKRPSNMKRESPTCNLFPAS-KSPASSPLTRST------PPVRGRAGPS 206
R L + + S ++ S C + SP+ SP S P V + +
Sbjct: 828 SRDLIKDKIEPSAKDSFIENSSSNCTSGSSKPNSPSISPSILSNTEHKRGPEVTSQGVQT 887
Query: 207 GRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRP 266
A +E + + + + TL +P RS P+PST+ + P+
Sbjct: 888 SSPACKQEKDDKEEKKDAAEQVRKSTL-----NPNAKEFNPRSFSQPKPSTTPTSPRPQA 942
Query: 267 QGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALP 305
Q + + Q P P +P P VP G P
Sbjct: 943 QPSPSMVGHQQPTP-VYTQPVCFAPNMMYPVPVSPGVQP 980
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 46.6 bits (109), Expect = 3e-05
Identities = 70/247 (28%), Positives = 93/247 (37%), Gaps = 37/247 (14%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP V+++ P LTPR R+ R S G P R P P
Sbjct: 519 LPPVSAVPYGHPFWGFLTPRQRNLQRALSAFGAHRGLGFGPE-FGRPVPR---------P 568
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSG-EFVGLTLKFLHPSPPGPPTP 246
A+S L R P R S++ RA V + + G L + P PG P
Sbjct: 569 ATS-LARFLKKTLSEKKPIARLRGSQKARAGGPAVREAAYKRFGYKLAGMDPEKPGTPIV 627
Query: 247 IRSVLAPQPSTSNSQRLPRPQGAAAKSS--SQLPIPSAIPRPASRMPLTSRSVPPGRGAL 304
+R S+++++R P PQ A S S L P PRP S P PP
Sbjct: 628 LRRAQPRARSSNDARRPPAPQPAPRTLSHWSALLSPPVPPRPPSSGP------PPA---- 677
Query: 305 PPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLP----------VMGATRSNLQPPR 354
PP S GLPRP++ +R H P + ++P V S PP
Sbjct: 678 PPLS-PALSGLPRPASPYGSLRR--HPPPWAAPAHVPPAPQASWWAFVEPPAVSPEVPPD 734
Query: 355 KVAVPGP 361
+A PGP
Sbjct: 735 LLAFPGP 741
Score = 43.1 bits (100), Expect = 4e-04
Identities = 76/280 (27%), Positives = 101/280 (36%), Gaps = 40/280 (14%)
Query: 105 PRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATS 164
P V P+P+ + + P + P V + P P P R + R+G+ S
Sbjct: 707 PAHVPPAPQASWWAFVEPPA--VSPEVPPDLLAFPGPR---PSFRGSRRRGAAFGFPGAS 761
Query: 165 GKRPSNMKRESPTCNLFPASKSPAS----SPLTRSTPPVRGRAGP-------SGRAAASE 213
R S + SP + P+ +S SPL +P + R GP R S
Sbjct: 762 -PRASRRRAWSPLASPQPSLRSSPGLGYCSPLAPPSPQLSLRTGPFQPPFLPPARRPRSL 820
Query: 214 ETRAAKLRVSGSGEFVGLTLKFLHPSPPGPP-----TPIRSVL-APQPSTSNSQRLPRPQ 267
+ A R +G G L P PP PP +P RS L P +RL P
Sbjct: 821 QESPAPRRAAGRLGPPGSPLPG-SPRPPSPPLGLCHSPRRSSLNLPSRLPHTWRRLSEPP 879
Query: 268 GAAAKSSSQLPIPSAIPRPASRMPLTSR-------------SVPPGRGALPPDSLST-RK 313
A K +LP A R PL R +VPP + D T R
Sbjct: 880 TRAVKPQVRLPFHRPPRAGAWRAPLEHRESPREPEDSETPWTVPPLAPSWDVDMPPTQRP 939
Query: 314 GLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRS-NLQP 352
P P AG R R PV + L ++G S LQP
Sbjct: 940 PSPWPGGAGSR-RGFSRPPPVPENPFLQLLGPVPSPTLQP 978
Score = 35.0 bits (79), Expect = 0.10
Identities = 95/387 (24%), Positives = 132/387 (34%), Gaps = 77/387 (19%)
Query: 18 FGGLSPSDSREEEDITVLVTPEKPLRR--GLSHRSDPNAVAPAPQGVRLSLGPLSPEKLE 75
F G SP SR + L +P+ LR GL + S +AP + L GP P
Sbjct: 757 FPGASPRASRRRA-WSPLASPQPSLRSSPGLGYCSP---LAPPSPQLSLRTGPFQPP--- 809
Query: 76 EILDEANRLAAQLEQCALQDRESAGEGLGPRRV----KPSPRRETFVLKDSPVRDLLPTV 131
L A R + E A R +AG LGP P P L SP R L
Sbjct: 810 -FLPPARRPRSLQESPA--PRRAAGR-LGPPGSPLPGSPRPPSPPLGLCHSPRRSSLNLP 865
Query: 132 NSLTR-----STPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKS 186
+ L S P ++ P++R R RA + + P RESP +
Sbjct: 866 SRLPHTWRRLSEPPTRAVKPQVRLPFH----RPPRAGAWRAPLE-HRESP--------RE 912
Query: 187 PASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTP 246
P S + PP+ PS R G+G G F P PP P P
Sbjct: 913 PEDSETPWTVPPL----APSWDVDMPPTQRPPSPWPGGAGSRRG----FSRP-PPVPENP 963
Query: 247 IRSVLAPQPSTSNSQRLP-----------------------------RPQGAAAKSSSQL 277
+L P PS + P +P+ A QL
Sbjct: 964 FLQLLGPVPSPTLQPEDPAADMTRVFLGRHHEPGPGQLTKSAGPTPEKPEEEATLGDPQL 1023
Query: 278 PIPSAIPRPASRMPLT-SRSVPPGRGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQ 336
P + P PA +T + + P + L P+ + R L P A + R + P +
Sbjct: 1024 PAETKPPTPAPPKDVTPPKDITPPKDVL-PEQKTLRPSLSYPLAACDQTRATW--PPWHR 1080
Query: 337 RLNLPVMGATRSNLQPPRKVAVPGPTR 363
LP A + ++ P + G R
Sbjct: 1081 WGTLPQAAAPLAPIRAPEPLPKGGERR 1107
Score = 28.9 bits (63), Expect = 7.5
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 213 EETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI------RSVLAPQPSTSNSQR--LP 264
E+ A R+ G G+ G + +P PP P S LA Q + + Q L
Sbjct: 2407 EKPTAIAYRMKGGGQPGGGSSSGTEDTPRRPPEPKPIPGLDASTLALQQAFIHKQAVLLA 2466
Query: 265 RPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRP 318
R A + Q P+ +A+ + P + P G PP + P+P
Sbjct: 2467 REMTLQATALQQQPLSAALRSLPAEKPPAPEAQPTSVGTGPPAKPVLLRATPKP 2520
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 46.2 bits (108), Expect = 5e-05
Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 29/171 (16%)
Query: 151 NDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRA- 209
+D GS+ + A S ++ +P A+ + + +P AGP+ A
Sbjct: 23 SDLVGSLESQLAASAAHHHHLAPRTPEVRA--AAAGALGNHVVSGSPAGAAGAGPAAPAE 80
Query: 210 ----AASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPR 265
AA E A + R G G P PGPP+P R ++ P+ ++ P
Sbjct: 81 GAPGAAPEPPPAGRARPGGGG-----------PQRPGPPSPRRPLVPAGPAPPAAKLRPP 129
Query: 266 PQG----------AAAKSSSQLPIPSAIPRPASRMPLTSRSVP-PGRGALP 305
P+G AAA ++ P P+ +PA L +R+ P PG G P
Sbjct: 130 PEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP 180
Score = 37.7 bits (86), Expect = 0.016
Identities = 54/226 (23%), Positives = 72/226 (31%), Gaps = 50/226 (22%)
Query: 155 GSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEE 214
GS L + P+ + L P K PA+ TPP G A P AA
Sbjct: 200 GSAALLNSHHAAAPAVSLVNNGPAALLPLPK-PAAPGTVIQTPPFVGAAAPPAPAA---- 254
Query: 215 TRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAA--- 271
PSPP P P AP P L RP G A
Sbjct: 255 -----------------------PSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPP 291
Query: 272 KSSSQLPIPSA-----------IPRPASRMPLTSRSVP-PGRGALPP----DSLSTRKGL 315
++ +P P+A P PA+ P P PG A P + S ++ +
Sbjct: 292 TAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVV 351
Query: 316 PRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPGP 361
A + SG P S ++ + + L P V P P
Sbjct: 352 QAAPPAAQTLAASG---PASTAASMVIGPTMQGALPSPAAVPPPAP 394
Score = 33.9 bits (76), Expect = 0.23
Identities = 41/129 (31%), Positives = 52/129 (40%), Gaps = 22/129 (17%)
Query: 183 ASKSPASSPLTRSTPPVRGRAG--PSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPS- 239
A SPA+ P PP G P G A A ++ + + SG LT L P
Sbjct: 382 ALPSPAAVP-----PPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTVLAPRL 436
Query: 240 --PPGPPTPIRSVLAPQ----PSTSNSQRLPRPQGAAAKSSSQL---PIPSAIPRPASRM 290
PP PT I++ P + N Q L PQ A A+ +Q P + PRPA
Sbjct: 437 PQPPQNPTNIQNFQLPPGMVLVRSENGQLLMIPQQALAQMQAQAHAQPQTTMAPRPA--- 493
Query: 291 PLTSRSVPP 299
T S PP
Sbjct: 494 --TPTSAPP 500
Score = 30.8 bits (68), Expect = 2.0
Identities = 36/137 (26%), Positives = 49/137 (35%), Gaps = 5/137 (3%)
Query: 183 ASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPG 242
A P +P T + PP AGP A A AA+ S G
Sbjct: 269 APPPPPPAPATLARPPGHP-AGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSG 327
Query: 243 PPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPL--TSRSVPPG 300
P P + AP P P+ AA ++Q S A+ M + T + P
Sbjct: 328 QPGPGAAAAAPAPGVKAES--PKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPS 385
Query: 301 RGALPPDSLSTRKGLPR 317
A+PP + T GLP+
Sbjct: 386 PAAVPPPAPGTPTGLPK 402
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 45.8 bits (107), Expect = 6e-05
Identities = 56/217 (25%), Positives = 83/217 (38%), Gaps = 18/217 (8%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP + + ST L S+ G L T S T +L S
Sbjct: 1793 LPVTDVSSASTGQAIPLPVTSPSSASTGDTTPLPVTDASSAST----GDTTSLPVTIPSS 1848
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
ASS T S P + +G A + T A+ + +G+ L + + + G TP+
Sbjct: 1849 ASSGHTTSLPVTDASSVSTGHATSLLVTDASSV---STGDTTPLPVTDTNSASTGDTTPL 1905
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASR-----MPLT-SRSVPPGR 301
A ST ++ LP ++A + P+P P AS +P+T + SVP G
Sbjct: 1906 HVTDASSVSTGHATSLPVTSLSSASTGDTTPLPVTSPSSASSGHTTPLPVTDASSVPTGH 1965
Query: 302 GALPP----DSLSTRKGLPRPSTAGHRVRESGHKVPV 334
P S+ST P P T V +GH P+
Sbjct: 1966 ATSLPVTDASSVSTGHATPLPVTDASSV-STGHATPL 2001
Score = 36.6 bits (83), Expect = 0.036
Identities = 50/217 (23%), Positives = 77/217 (35%), Gaps = 18/217 (8%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP ++ + ST + L S+ G L T S L S
Sbjct: 3425 LPVTDASSASTGQATPLPVTSLSSVSTGDTTPLLVTDASSVST----GHATPLPVTDTSS 3480
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
AS+ T P + +G+A T + + +G+ L + G TP+
Sbjct: 3481 ASTGDTTRLPVTDTSSASTGQATPLPVTSLSSV---STGDTTPLLVTDASSVSTGHATPL 3537
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASR-----MPLTSRSVPPGRG 302
ST ++ RLP ++A + P+P IP +S +P+TS S
Sbjct: 3538 PVTDTSSASTGDTTRLPVTDTSSASTGQATPLPVTIPSSSSSGHTTPLPVTSTSSVSTGH 3597
Query: 303 ALP-----PDSLSTRKGLPRPSTAGHRVRESGHKVPV 334
P P S ST P P T+ +GH P+
Sbjct: 3598 VTPLHVTSPSSASTGHVTPLPVTSTSSA-STGHATPL 3633
Score = 36.2 bits (82), Expect = 0.047
Identities = 41/207 (19%), Positives = 71/207 (34%), Gaps = 5/207 (2%)
Query: 122 SPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRK-----GSVRALRATSGKRPSNMKRESP 176
+P+ P+ S +TP P + T + G A + + P +
Sbjct: 1647 TPLHVTSPSSASTGHATPLPVTSTSSASTGHATPLPVTGLSSATTDDTTRLPVTDVSSAS 1706
Query: 177 TCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFL 236
T P + SS T T P+ + S + + +G+ L +
Sbjct: 1707 TGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHASPLLVTDASSASTGQATPLPVTDT 1766
Query: 237 HPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRS 296
TP+ ST ++ RLP ++A + +P+P P AS T
Sbjct: 1767 SSVSTAHATPLPVTGLSSASTDDTTRLPVTDVSSASTGQAIPLPVTSPSSASTGDTTPLP 1826
Query: 297 VPPGRGALPPDSLSTRKGLPRPSTAGH 323
V A D+ S +P +++GH
Sbjct: 1827 VTDASSASTGDTTSLPVTIPSSASSGH 1853
Score = 35.8 bits (81), Expect = 0.062
Identities = 39/151 (25%), Positives = 54/151 (35%), Gaps = 7/151 (4%)
Query: 186 SPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPT 245
S A P +S+P A P AA S + + R S + + L + PPT
Sbjct: 880 STAGRPTGQSSP-TSPSASPQETAAISRMAQTQRTRTSRGSDTISLASQATDTFSTVPPT 938
Query: 246 P--IRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGA 303
P I S P T P G K+ + I +A P P + S
Sbjct: 939 PPSITSTGLTSPQTETHTLSPSGSG---KTFTTALISNATPLPVTYASSASTGHTTPLHV 995
Query: 304 LPPDSLSTRKGLPRPSTAGHRVRESGHKVPV 334
S+ST P P T+ V +GH P+
Sbjct: 996 TDASSVSTGHATPLPVTSPSSV-STGHTTPL 1025
Score = 35.4 bits (80), Expect = 0.080
Identities = 54/242 (22%), Positives = 85/242 (35%), Gaps = 28/242 (11%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP ++ + ST + L S+ G L T S T + P +
Sbjct: 3153 LPVTDTSSSSTGDTTPLLVTETSSVSTGHATPLLVTDASSAS-------TGHATPLHVTS 3205
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
SS T T PV S + L + +G+ L + + + G TP+
Sbjct: 3206 PSSASTGDTTPVPVTDTSSVSTGHATPLPVTGLSSASTGDTTRLPVTDISSASTGQATPL 3265
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIP-----SAIPRPASRMPLTSRSVPPGRG 302
ST ++ LP ++A + P+P SA A+ +P+TS S
Sbjct: 3266 PVTNTSSVSTGDTMPLPVTSPSSASTGHATPLPVTSTSSASTGHATPVPVTSTSSASTGH 3325
Query: 303 ALP-----PDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRL----------NLPVMGATR 347
P S ST P P T+ +GH P+ + LPV GA+
Sbjct: 3326 TTPLPVTDTSSASTGDTTPLPVTSPSSA-STGHTTPLHVTIPSSASTGDTSTLPVTGASS 3384
Query: 348 SN 349
++
Sbjct: 3385 AS 3386
Score = 35.4 bits (80), Expect = 0.080
Identities = 45/194 (23%), Positives = 66/194 (34%), Gaps = 13/194 (6%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP ++ + ST + L S+ G + TS S T + P +
Sbjct: 3873 LPVTSTSSVSTGHATPLPVTSPSSASTGHATPVPVTSTSSAS-------TGDTTPLPVTN 3925
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
ASS T P+ + S + + +G L L L G TP+
Sbjct: 3926 ASSLSTGHATPLHVTSPSSASRGDTSTLPVTDASSASTGHATPLPLTSLSSVSTGDTTPL 3985
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPD 307
ST + LP ++ + P+P IP AS TS V
Sbjct: 3986 PVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTIPSSASSGHTTSLPVTDA------S 4039
Query: 308 SLSTRKGLPRPSTA 321
S+ST G P P T+
Sbjct: 4040 SVSTGHGTPLPVTS 4053
Score = 35.0 bits (79), Expect = 0.10
Identities = 51/222 (22%), Positives = 75/222 (33%), Gaps = 20/222 (9%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP ++ + ST + L S+ G L T S T P +
Sbjct: 2193 LPVTDTSSASTGQATPLPVTSPSSASTGHAIPLLVTDTSSAS-------TGQATPLPVTS 2245
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
SS T T P+ S + L +G+ L + + G TP+
Sbjct: 2246 LSSASTGDTTPLPVTDASSVSTGHATSLPVTSLSSVSTGDTTPLPVTSPSSASTGHATPL 2305
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPD 307
A ST ++ LP ++A + P+P P AS T V
Sbjct: 2306 HVTDASSASTGHATPLPVTSLSSASTGDTTPLPVTSPSSASTGHATPLHVTDA------S 2359
Query: 308 SLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSN 349
S+ST P P T+ SGH P LPV A+ ++
Sbjct: 2360 SVSTGDTTPLPVTSSSSA-SSGHTTP------LPVTDASSAS 2394
Score = 34.3 bits (77), Expect = 0.18
Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 20/226 (8%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRAL------RATSGKRPSNMKRESPTCNLF 181
LP ++ + ST +SL + S G L A++G+ S + ++ + +
Sbjct: 1425 LPVTDASSVSTDHATSLPVTIPSAASTGHTTPLPVTDTSSASTGQATSLLVTDTSSVSTG 1484
Query: 182 PASKSPASSPLTRST---PPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHP 238
+ P +S + ST P+ + S + L + +G+ + L +
Sbjct: 1485 DTTPLPVTSTSSASTGHVTPLHVTSPSSASTGHATPLPVTSLSSASTGDTMPLPVTSPSS 1544
Query: 239 SPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASR-----MPLT 293
+ G TP+ A ST ++ LP ++A + P+P AS+ +P+T
Sbjct: 1545 ASTGDTTPLPVTDASSVSTGHTTPLPVTSPSSASTGHTTPLPVTDTSSASKGDTTPLPVT 1604
Query: 294 SRSVPPGRGALP-----PDSLSTRKGLPRPSTAGHRVRESGHKVPV 334
S S P S ST P P T + +GH P+
Sbjct: 1605 SPSSASTGHTTPLPVTDTSSASTGDTTPLPVTNASSL-STGHATPL 1649
Score = 33.5 bits (75), Expect = 0.31
Identities = 52/223 (23%), Positives = 79/223 (35%), Gaps = 22/223 (9%)
Query: 122 SPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLF 181
+P+ P+ S +TP P + S+ G L TS PS+ T
Sbjct: 1295 TPLHVTSPSSASTGHATPLPVTSL----SSASTGDTMPLPVTS---PSSASTGDTT---- 1343
Query: 182 PASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPP 241
P + ASS T T P+ S + L +G+ L + +
Sbjct: 1344 PLPVTDASSVSTGHTTPLHVTDASSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSAST 1403
Query: 242 GPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASR-----MPLT--- 293
G TP+ ST ++ LP ++ + +P IP AS +P+T
Sbjct: 1404 GHATPLLVTDTSSASTGHATPLPVTDASSVSTDHATSLPVTIPSAASTGHTTPLPVTDTS 1463
Query: 294 SRSVPPGRGALPPD--SLSTRKGLPRPSTAGHRVRESGHKVPV 334
S S L D S+ST P P T+ +GH P+
Sbjct: 1464 SASTGQATSLLVTDTSSVSTGDTTPLPVTSTSSA-STGHVTPL 1505
Score = 33.1 bits (74), Expect = 0.40
Identities = 46/204 (22%), Positives = 70/204 (34%), Gaps = 27/204 (13%)
Query: 122 SPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLF 181
+P+ P+ S TP P + T S+ G L T S T +
Sbjct: 3599 TPLHVTSPSSASTGHVTPLPVTST----SSASTGHATPLLVTDASSVS-------TGHAT 3647
Query: 182 PASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPP 241
P + ASS T T P+ S + L +G+ L + +
Sbjct: 3648 PLPVTDASSASTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTDASSAST 3707
Query: 242 GPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIP-----SAIPRPASRMPLTSRS 296
G TP+ + ST ++ LP ++A + P+P SA + +P+T S
Sbjct: 3708 GHATPLPVTIPSSVSTGDTMPLPVTSPSSASTGHATPLPVTGLSSASTGDTTPLPVTDTS 3767
Query: 297 VPPGRGALPPDSLSTRKGLPRPST 320
S STR P P T
Sbjct: 3768 -----------SASTRHATPLPVT 3780
Score = 33.1 bits (74), Expect = 0.40
Identities = 54/245 (22%), Positives = 85/245 (34%), Gaps = 37/245 (15%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP N+ + ST + L S+ +G L T S T + P +
Sbjct: 3921 LPVTNASSLSTGHATPLHVTSPSSASRGDTSTLPVTDASSAS-------TGHATPLPLTS 3973
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
SS T T P+ +T +A +G+ L + L G TP+
Sbjct: 3974 LSSVSTGDTTPL-----------PVTDTSSAS-----TGQATPLPVTSLSSVSTGDTTPL 4017
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASR-----MPLTSRSVPPGRG 302
+ S+ ++ LP ++ + P+P AS +P+T S
Sbjct: 4018 PVTIPSSASSGHTTSLPVTDASSVSTGHGTPLPVTSTSSASTGDTTPLPVTDTSSASTGH 4077
Query: 303 ALP-----PDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVA 357
A P S ST P P T+ V +GH P++ A+ + P K+
Sbjct: 4078 ATPLPVTDTSSASTGHATPLPVTSLSSV-STGHATPLAVS---SATSASTVSSDSPLKME 4133
Query: 358 VPGPT 362
PG T
Sbjct: 4134 TPGMT 4138
Score = 32.7 bits (73), Expect = 0.52
Identities = 51/233 (21%), Positives = 80/233 (34%), Gaps = 34/233 (14%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP ++ + ST + L S+ G L T S T + P +
Sbjct: 3665 LPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTDASSAS-------TGHATPLPVTI 3717
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
SS T T P+ + S + L + +G+ L + + TP+
Sbjct: 3718 PSSVSTGDTMPLPVTSPSSASTGHATPLPVTGLSSASTGDTTPLPVTDTSSASTRHATPL 3777
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIP----------SAIPRP----------- 286
ST ++ RLP ++A + P+P P P
Sbjct: 3778 PVTDTSSASTDDTTRLPVTDVSSASTGHATPLPVTSTSSASTGDTTPLPVTDTSSVSTGH 3837
Query: 287 ASRMPLTSRSVPPGRGALP-----PDSLSTRKGLPRPSTAGHRVRESGHKVPV 334
A+ +P+TSRS A P S+ST P P T+ V +GH P+
Sbjct: 3838 ATSLPVTSRSSASTGHATPLPVTDTSSVSTGHATPLPVTSTSSV-STGHATPL 3889
Score = 32.3 bits (72), Expect = 0.68
Identities = 45/204 (22%), Positives = 73/204 (35%), Gaps = 17/204 (8%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP + + ST + L S+ G L TS PS+ + T + P +
Sbjct: 3249 LPVTDISSASTGQATPLPVTNTSSVSTGDTMPLPVTS---PSS----ASTGHATPLPVTS 3301
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
SS T PV + S + + +G+ L + + G TP+
Sbjct: 3302 TSSASTGHATPVPVTSTSSASTGHTTPLPVTDTSSASTGDTTPLPVTSPSSASTGHTTPL 3361
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIP-----SAIPRPASRMPLTSRSVPPGRG 302
+ ST ++ LP ++A + P+P S A+ +P+TS S
Sbjct: 3362 HVTIPSSASTGDTSTLPVTGASSASTGHATPLPVTDTSSVSTGHATPLPVTSLSSVSTGD 3421
Query: 303 ALP-----PDSLSTRKGLPRPSTA 321
P S ST + P P T+
Sbjct: 3422 TTPLPVTDASSASTGQATPLPVTS 3445
Score = 32.0 bits (71), Expect = 0.89
Identities = 47/204 (23%), Positives = 73/204 (35%), Gaps = 17/204 (8%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP ++ + ST + L S+ G L T+ S L S S
Sbjct: 2609 LPVTDTSSASTGDTTPLPVTDTSSASTGHATPLPVTNTSSVST----GHATPLHVTSPSS 2664
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
AS+ T P + +G A + T A+ + +G L + + G TP+
Sbjct: 2665 ASTGHTTPLPVTDASSVSTGHATSLPVTDASSVF---TGHATSLPVTIPSSASSGHTTPL 2721
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIP-----SAIPRPASRMPLTSRSVPPGRG 302
A ST ++ LP ++ + P+P S A+ +PLTS S
Sbjct: 2722 PVTDASSVSTGHATSLPVTDASSVSTGHATPLPVTDASSVSTGHATPLPLTSLSSVSTGD 2781
Query: 303 ALP-----PDSLSTRKGLPRPSTA 321
P S ST + P P T+
Sbjct: 2782 TTPLPVTDTSSASTGQATPLPVTS 2805
Score = 30.8 bits (68), Expect = 2.0
Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 17/204 (8%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP + + ST + L S+ G L T S S + A+ +
Sbjct: 1185 LPVTSPSSASTGHATPLLVTDTSSASTGHATPLPVTDASSVSTDHATSLPVTIPSAASTG 1244
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
++PL P + +G+A + T + + +G+ L + + G TP+
Sbjct: 1245 HTTPL----PVTDTSSASTGQATSLLVTDTSSV---STGDTTPLPVTSTSSASTGHVTPL 1297
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASR-----MPLTSRSVPPGRG 302
ST ++ LP ++A + +P+P P AS +P+T S
Sbjct: 1298 HVTSPSSASTGHATPLPVTSLSSASTGDTMPLPVTSPSSASTGDTTPLPVTDASSVSTGH 1357
Query: 303 ALP-----PDSLSTRKGLPRPSTA 321
P S ST + P P T+
Sbjct: 1358 TTPLHVTDASSASTGQATPLPVTS 1381
Score = 30.8 bits (68), Expect = 2.0
Identities = 48/217 (22%), Positives = 77/217 (35%), Gaps = 18/217 (8%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP + + ST + L S+ G L TS PS+ + T + P +
Sbjct: 1537 LPVTSPSSASTGDTTPLPVTDASSVSTGHTTPLPVTS---PSS----ASTGHTTPLPVTD 1589
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
SS T P+ + S + + +G+ L + G TP+
Sbjct: 1590 TSSASKGDTTPLPVTSPSSASTGHTTPLPVTDTSSASTGDTTPLPVTNASSLSTGHATPL 1649
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIP-----SAIPRPASRMPLTSRSVPPGRG 302
ST ++ LP ++A + P+P SA +R+P+T S
Sbjct: 1650 HVTSPSSASTGHATPLPVTSTSSASTGHATPLPVTGLSSATTDDTTRLPVTDVSSASTGQ 1709
Query: 303 ALP-----PDSLSTRKGLPRPSTAGHRVRESGHKVPV 334
A P S+ST P P T+ +GH P+
Sbjct: 1710 ATPLPVTSLSSVSTGDTTPLPVTSPSSA-STGHASPL 1745
Score = 30.8 bits (68), Expect = 2.0
Identities = 41/175 (23%), Positives = 62/175 (35%), Gaps = 17/175 (9%)
Query: 182 PASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPP 241
P + ASS TR + + S + + +G L + +
Sbjct: 2528 PLPVTNASSLSTRHATSLHVTSPSSASTGHATSLPVTDTSAASTGHATPLPVTSTSSAST 2587
Query: 242 GPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIP-----SAIPRPASRMPLTSRS 296
G TP+ ST + LP ++A + P+P SA A+ +P+T+ S
Sbjct: 2588 GDTTPLPVTDTYSASTGQATPLPVTDTSSASTGDTTPLPVTDTSSASTGHATPLPVTNTS 2647
Query: 297 VPPGRGALP-----PDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGAT 346
A P P S ST P P T V +GH +LPV A+
Sbjct: 2648 SVSTGHATPLHVTSPSSASTGHTTPLPVTDASSV-STGHAT------SLPVTDAS 2695
Score = 30.4 bits (67), Expect = 2.6
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 242 GPPTPIRSVLAPQPSTSNSQRLP--RPQGAAAKSSSQLPI---PSAIPRPASRMPLTSRS 296
G TP+ A ST ++ RLP P A+ ++ LP+ PSA + +P+T+ S
Sbjct: 2476 GHTTPLLVTDASSVSTGDTTRLPVTSPSSASTGHTTPLPVTDTPSASTGDTTPLPVTNAS 2535
Query: 297 VPPGRGA-----LPPDSLSTRKGLPRPSTAGHRVRESGHKVPV 334
R A P S ST P T +GH P+
Sbjct: 2536 SLSTRHATSLHVTSPSSASTGHATSLPVT-DTSAASTGHATPL 2577
Score = 30.0 bits (66), Expect = 3.4
Identities = 49/224 (21%), Positives = 76/224 (33%), Gaps = 17/224 (7%)
Query: 108 VKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKR 167
+ PS +TF LP + + ST + L S+ G L TS
Sbjct: 957 LSPSGSGKTFTTALISNATPLPVTYASSASTGHTTPLHVTDASSVSTGHATPLPVTS--- 1013
Query: 168 PSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGE 227
PS++ T P + SS T P+ + S S + +G
Sbjct: 1014 PSSVSTGHTT----PLPVTDTSSESTGHVTPLPVTSFSSASTGDSTPLPVTDTSSASTGH 1069
Query: 228 FVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIP-----SA 282
L + L + G TP+ ST ++ LP ++ + P+P SA
Sbjct: 1070 VTPLPVTSLSSASTGDTTPLPVTDTSSASTGHATSLPVTDTSSVSTGHTTPLPVTDTSSA 1129
Query: 283 IPRPASRMPLTSRSVPPGRGALP-----PDSLSTRKGLPRPSTA 321
A+ +P+T S P S ST + P P T+
Sbjct: 1130 STGHATSLPVTDTSSVSTGHTTPLHVTDASSASTGQATPLPVTS 1173
Score = 29.6 bits (65), Expect = 4.4
Identities = 49/217 (22%), Positives = 75/217 (34%), Gaps = 18/217 (8%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP ++ + ST +SL S+ G L T S S P + +
Sbjct: 1089 LPVTDTSSASTGHATSLPVTDTSSVSTGHTTPLPVTDTSSASTGHATS-----LPVTDT- 1142
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
SS T T P+ S + L +G+ L + + G TP+
Sbjct: 1143 -SSVSTGHTTPLHVTDASSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHATPL 1201
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASR-----MPLT---SRSVPP 299
ST ++ LP ++ + +P IP AS +P+T S S
Sbjct: 1202 LVTDTSSASTGHATPLPVTDASSVSTDHATSLPVTIPSAASTGHTTPLPVTDTSSASTGQ 1261
Query: 300 GRGALPPD--SLSTRKGLPRPSTAGHRVRESGHKVPV 334
L D S+ST P P T+ +GH P+
Sbjct: 1262 ATSLLVTDTSSVSTGDTTPLPVTSTSSA-STGHVTPL 1297
Score = 29.6 bits (65), Expect = 4.4
Identities = 44/222 (19%), Positives = 72/222 (32%), Gaps = 10/222 (4%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP N+ + ST +SL S+ G +L T S T + P +
Sbjct: 2529 LPVTNASSLSTRHATSLHVTSPSSASTGHATSLPVTDTSAAS-------TGHATPLPVTS 2581
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
SS T T P+ S + + +G+ L + + G TP+
Sbjct: 2582 TSSASTGDTTPLPVTDTYSASTGQATPLPVTDTSSASTGDTTPLPVTDTSSASTGHATPL 2641
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGALPPD 307
ST ++ L ++A + P+P S TS V
Sbjct: 2642 PVTNTSSVSTGHATPLHVTSPSSASTGHTTPLPVTDASSVSTGHATSLPVTDASSVFTGH 2701
Query: 308 SLSTRKGLPRPSTAGHRVR---ESGHKVPVSQRLNLPVMGAT 346
+ S +P +++GH V +LPV A+
Sbjct: 2702 ATSLPVTIPSSASSGHTTPLPVTDASSVSTGHATSLPVTDAS 2743
Score = 29.3 bits (64), Expect = 5.8
Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 23/198 (11%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP + + ST + L S+ G L TS S+ + P +
Sbjct: 2337 LPVTSPSSASTGHATPLHVTDASSVSTGDTTPLPVTSSSSASSG-------HTTPLPVTD 2389
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPI 247
ASS T T P+ S + L + +G+ L + + + G TP+
Sbjct: 2390 ASSASTGDTTPLPVTDTSSASTGHATHLPVTGLSSASTGDTTRLPVTNVSSASTGHATPL 2449
Query: 248 RSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPI-----PSAIPRPASRMPLTSRSVPPGRG 302
ST ++ LP ++ + P+ S +R+P+TS
Sbjct: 2450 PVTSTSSASTGDTTPLPGTDTSSVSTGHTTPLLVTDASSVSTGDTTRLPVTS-------- 2501
Query: 303 ALPPDSLSTRKGLPRPST 320
P S ST P P T
Sbjct: 2502 ---PSSASTGHTTPLPVT 2516
Score = 29.3 bits (64), Expect = 5.8
Identities = 43/209 (20%), Positives = 68/209 (32%), Gaps = 19/209 (9%)
Query: 122 SPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKR---------PSNMK 172
+P+ P+ S +TP P + T S+ G L TS P
Sbjct: 2895 TPLHVTSPSSASTGHATPLPVTDT----SSASTGHANPLHVTSPSSASTGHATPLPVTDT 2950
Query: 173 RESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLT 232
+ T + P + SS T T P+ + S + + +G+ L
Sbjct: 2951 SSASTGHATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHTTPLPVTDTSSASTGQATALP 3010
Query: 233 LKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPL 292
+ + G TP+ ST + LP ++ + P+P P AS
Sbjct: 3011 VTSTSSASTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHA 3070
Query: 293 TSRSVPPGRGALPPDSLSTRKGLPRPSTA 321
T V S ST + P P T+
Sbjct: 3071 TPLLVTDA------SSASTGQATPLPVTS 3093
Score = 28.9 bits (63), Expect = 7.5
Identities = 42/187 (22%), Positives = 65/187 (34%), Gaps = 22/187 (11%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSP 187
LP ++ + ST + L S+ G +L TS S T L S S
Sbjct: 1889 LPVTDTNSASTGDTTPLHVTDASSVSTGHATSLPVTSLSSAST----GDTTPLPVTSPSS 1944
Query: 188 ASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVS-------------GSGEFVGLTLK 234
ASS T P + P+G A + T A+ + +G L +
Sbjct: 1945 ASSGHTTPLPVTDASSVPTGHATSLPVTDASSVSTGHATPLPVTDASSVSTGHATPLPVT 2004
Query: 235 FLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIP-----SAIPRPASR 289
G TP+ ST ++ LP ++A + P+P S +
Sbjct: 2005 DTSSVSTGQATPLPVTSLSSASTGDTTPLPVTDTSSASTGQDTPLPVTSLSSVSTGDTTP 2064
Query: 290 MPLTSRS 296
+P+TS S
Sbjct: 2065 LPVTSPS 2071
Score = 28.5 bits (62), Expect = 9.8
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 3/127 (2%)
Query: 184 SKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGP 243
S S AS+ T P + +G+A T + + +G+ L + + G
Sbjct: 3013 STSSASTGDTTPLPVTDTSSASTGQATPLPVTSLSSV---STGDTTPLPVTSPSSASTGH 3069
Query: 244 PTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGA 303
TP+ A ST + LP ++ + P+P P AS TS V A
Sbjct: 3070 ATPLLVTDASSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHATSLPVTDTSSA 3129
Query: 304 LPPDSLS 310
D+ S
Sbjct: 3130 STGDTTS 3136
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 45.8 bits (107), Expect = 6e-05
Identities = 74/318 (23%), Positives = 106/318 (33%), Gaps = 56/318 (17%)
Query: 39 EKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQ---- 94
+KP + L+ +DP P P+ ++ P+ + + E +L + L + +
Sbjct: 93 DKP-KNQLNKETDPVKSPPLPEHQKIPCNSAEPKSIPALSMETQKLGSVLSPESPKPTPL 151
Query: 95 ---DRESAGEGLGPRRV----KPSPRRETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPR 147
+ + G + P P P + V P + + + PSP P
Sbjct: 152 TPLEPQKPGSVVSPELQTPLPSPEPSKPASVSSPEPPKSVPVCESQKLAPVPSPEPQKPA 211
Query: 148 ---------LRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPA--SKSPASSPLTR-- 194
SN + T G PS ESP P SPA+SP +R
Sbjct: 212 PVSPESVKATLSNPKPQKQSHFPETLGP-PSASSPESPVLAASPEPWGPSPAASPESRKS 270
Query: 195 --STPPVRGRAGPSGR--------AAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPP 244
+T P + PS A + E R A GS + P PPG P
Sbjct: 271 ARTTSPEPRKPSPSESPEPWKPFPAVSPEPRRPAPAVSPGSWK----------PGPPGSP 320
Query: 245 TPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLT------SRSVP 298
P +S PS S+ P + PIPS P P P S SV
Sbjct: 321 RPWKS----NPSASSGPWKPAKPAPSVSPGPWKPIPSVSPGPWKPTPSVSSASWKSSSVS 376
Query: 299 PGRGALPPDSLSTRKGLP 316
P PP S + K P
Sbjct: 377 PSSWKSPPASPESWKSGP 394
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 45.8 bits (107), Expect = 6e-05
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 147 RLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPL-TRSTPPVRGRAGP 205
R R R+ + LR PS +R+SPT + + S S +SS +RS P GR
Sbjct: 266 RSRRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPTPGREEK 325
Query: 206 ----SGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQ 261
+ + EE AA + SG G K P PG P P R+ A + S+S+S
Sbjct: 326 ITFITSFGGSDEEAAAAAAAAAASGVTTG---KPPAPPQPGGPAPGRNASARRRSSSSSS 382
Query: 262 RLPRPQGAAAKSSSQ 276
+ ++++SSS+
Sbjct: 383 SSSASRTSSSRSSSR 397
>gi|49472835 bridging integrator 2 [Homo sapiens]
Length = 565
Score = 45.8 bits (107), Expect = 6e-05
Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 26/209 (12%)
Query: 122 SPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATS-----GKRPSNMKRESP 176
SP ++ S + S + L P + ++ L G S+ + + P
Sbjct: 277 SPTSPSTLSLKSESESVSATEDLAPDAAQGEDNSEIKELLEEEEIEKEGSEASSSEEDEP 336
Query: 177 TCNLFPASKSPAS---SPLTR------------STPPVRGRAGPSGRAAASEETRAAKLR 221
PA PA SP T +TP G PSG+ ++S + R
Sbjct: 337 ----LPACNGPAQAQPSPTTERAKSQEEVLPSSTTPSPGGALSPSGQPSSSATEVVLRTR 392
Query: 222 VSGSGEFVGLTLKFLH--PSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPI 279
+ G + +PP P P R+ +P+PS+ N P G + +S + +
Sbjct: 393 TASEGSEQPKKRASIQRTSAPPSRPPPPRATASPRPSSGNIPSSPTASGGGSPTSPRASL 452
Query: 280 PSAIPRPASRMPLTSRSVPPGRGALPPDS 308
+ P + + ++ PP + P++
Sbjct: 453 GTGTASPRTSLEVSPNPEPPEKPVRTPEA 481
Score = 36.6 bits (83), Expect = 0.036
Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 15/192 (7%)
Query: 73 KLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVN 132
+++E+L+E E + ++ E GP + +PSP E + ++LP+
Sbjct: 311 EIKELLEEEEIEKEGSEASSSEEDEPLPACNGPAQAQPSPTTE----RAKSQEEVLPS-- 364
Query: 133 SLTRSTPSPS-SLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSP 191
+TPSP +L+P + + V T+ + K+ + ++ S P+ P
Sbjct: 365 ---STTPSPGGALSPSGQPSSSATEVVLRTRTASEGSEQPKKRA---SIQRTSAPPSRPP 418
Query: 192 LTRSTPPVRGRAG--PSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRS 249
R+T R +G PS A+ + + G+G T + P+P P P+R+
Sbjct: 419 PPRATASPRPSSGNIPSSPTASGGGSPTSPRASLGTGTASPRTSLEVSPNPEPPEKPVRT 478
Query: 250 VLAPQPSTSNSQ 261
A + ++Q
Sbjct: 479 PEAKENENIHNQ 490
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 45.4 bits (106), Expect = 8e-05
Identities = 63/224 (28%), Positives = 75/224 (33%), Gaps = 40/224 (17%)
Query: 168 PSNMKRESPTCNLFPASKS-----PASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRV 222
P+ SP PAS PASS RS V G G A E R A+ R
Sbjct: 584 PAEAPAPSPVPLTTPASAEEAIPLPASSDSERSASSVEGPGGALYARVARREARPARAR- 642
Query: 223 SGSGEFVGLTLKFLHPSP----PGPPTPIRSVL---------------APQPSTSNSQRL 263
GE GL+L PSP P PP P AP P S+
Sbjct: 643 ---GEIGGLSLS---PSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAA 696
Query: 264 PRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRG------ALPPDSLSTRKGLPR 317
P P S + P +R P T R PPG A P + + PR
Sbjct: 697 PSPSKRKRTPSDKSAHTVEHGSPRTRDP-TPR--PPGLPEEATALAAPSPPRARARAAPR 753
Query: 318 PSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPGP 361
P A R R + + L V G TRS + + GP
Sbjct: 754 PLGAHGRRRSPAKRAEAASMLAADVRGKTRSLGRAEVALGAQGP 797
Score = 39.7 bits (91), Expect = 0.004
Identities = 59/270 (21%), Positives = 91/270 (33%), Gaps = 53/270 (19%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKR---PSNMKRESPTCNLFPAS 184
L T S + P P+S ++ +G AL A +R P+ + E +L P+
Sbjct: 595 LTTPASAEEAIPLPASSDSERSASSVEGPGGALYARVARREARPARARGEIGGLSLSPSP 654
Query: 185 ---KSPASSPLTR-------------------STPPVRGRAGPSGRAAASEETRAAKLRV 222
K P P T+ S PP A PS S+ R +
Sbjct: 655 ERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPS----PSKRKRTPSDKS 710
Query: 223 SGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSA 282
+ + E + P PPG P ++ AP P + ++ PRP GA + S A
Sbjct: 711 AHTVEHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARAAPRPLGAHGRRRSPAKRAEA 770
Query: 283 IPRPASRMPLTSRSV-----------------PPGRGALPPDSLSTRKGLPRPSTAGHRV 325
A+ + +RS+ PP + S + P T G
Sbjct: 771 ASMLAADVRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARAPPATETPGPEK 830
Query: 326 RESGHKVPVSQRLNLPVMGATRSNLQPPRK 355
+ P + R P+ +PPRK
Sbjct: 831 AATDLPAPETPRKKTPIQ-------KPPRK 853
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 45.4 bits (106), Expect = 8e-05
Identities = 63/224 (28%), Positives = 75/224 (33%), Gaps = 40/224 (17%)
Query: 168 PSNMKRESPTCNLFPASKS-----PASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRV 222
P+ SP PAS PASS RS V G G A E R A+ R
Sbjct: 579 PAEAPAPSPVPLTTPASAEEAIPLPASSDSERSASSVEGPGGALYARVARREARPARAR- 637
Query: 223 SGSGEFVGLTLKFLHPSP----PGPPTPIRSVL---------------APQPSTSNSQRL 263
GE GL+L PSP P PP P AP P S+
Sbjct: 638 ---GEIGGLSLS---PSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAA 691
Query: 264 PRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRG------ALPPDSLSTRKGLPR 317
P P S + P +R P T R PPG A P + + PR
Sbjct: 692 PSPSKRKRTPSDKSAHTVEHGSPRTRDP-TPR--PPGLPEEATALAAPSPPRARARAAPR 748
Query: 318 PSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPGP 361
P A R R + + L V G TRS + + GP
Sbjct: 749 PLGAHGRRRSPAKRAEAASMLAADVRGKTRSLGRAEVALGAQGP 792
Score = 39.7 bits (91), Expect = 0.004
Identities = 59/270 (21%), Positives = 91/270 (33%), Gaps = 53/270 (19%)
Query: 128 LPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKR---PSNMKRESPTCNLFPAS 184
L T S + P P+S ++ +G AL A +R P+ + E +L P+
Sbjct: 590 LTTPASAEEAIPLPASSDSERSASSVEGPGGALYARVARREARPARARGEIGGLSLSPSP 649
Query: 185 ---KSPASSPLTR-------------------STPPVRGRAGPSGRAAASEETRAAKLRV 222
K P P T+ S PP A PS S+ R +
Sbjct: 650 ERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPS----PSKRKRTPSDKS 705
Query: 223 SGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSA 282
+ + E + P PPG P ++ AP P + ++ PRP GA + S A
Sbjct: 706 AHTVEHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARAAPRPLGAHGRRRSPAKRAEA 765
Query: 283 IPRPASRMPLTSRSV-----------------PPGRGALPPDSLSTRKGLPRPSTAGHRV 325
A+ + +RS+ PP + S + P T G
Sbjct: 766 ASMLAADVRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARAPPATETPGPEK 825
Query: 326 RESGHKVPVSQRLNLPVMGATRSNLQPPRK 355
+ P + R P+ +PPRK
Sbjct: 826 AATDLPAPETPRKKTPIQ-------KPPRK 848
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.129 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,315,755
Number of Sequences: 37866
Number of extensions: 1176178
Number of successful extensions: 9688
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 1112
Number of HSP's that attempted gapping in prelim test: 6815
Number of HSP's gapped (non-prelim): 3169
length of query: 363
length of database: 18,247,518
effective HSP length: 104
effective length of query: 259
effective length of database: 14,309,454
effective search space: 3706148586
effective search space used: 3706148586
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.