Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 73760405
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|73760405 thymopoietin isoform beta [Homo sapiens]
(454 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|73760405 thymopoietin isoform beta [Homo sapiens] 895 0.0
gi|73760401 thymopoietin isoform gamma [Homo sapiens] 438 e-123
gi|4507555 thymopoietin isoform alpha [Homo sapiens] 378 e-105
gi|7706607 LEM domain containing 3 [Homo sapiens] 49 9e-06
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 48 2e-05
gi|56676324 LEM domain containing 1 [Homo sapiens] 44 3e-04
gi|4557553 emerin [Homo sapiens] 43 5e-04
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 42 0.001
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 41 0.002
gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo sa... 39 0.013
gi|5802992 cyclin I [Homo sapiens] 38 0.022
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 37 0.028
gi|34482047 adaptor-related protein complex 3, beta 2 subunit [H... 37 0.037
gi|87299628 biorientation of chromosomes in cell division 1-like... 36 0.063
gi|21450645 tetratricopeptide repeat domain 16 [Homo sapiens] 36 0.063
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 36 0.082
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 36 0.082
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 36 0.082
gi|113425121 PREDICTED: similar to Golgin subfamily A member 8-l... 35 0.11
gi|4758410 fragile X mental retardation syndrome related protein... 35 0.14
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.14
gi|239758038 PREDICTED: mucin 3A, cell surface associated, parti... 35 0.18
gi|169164209 PREDICTED: hypothetical protein [Homo sapiens] 35 0.18
gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo ... 35 0.18
gi|4507963 zinc finger protein 37 homolog [Homo sapiens] 35 0.18
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 34 0.24
gi|113425119 PREDICTED: similar to golgi autoantigen, golgin sub... 34 0.24
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 34 0.24
gi|33354279 hypothetical protein LOC55425 [Homo sapiens] 34 0.24
gi|21541824 transducin-like enhancer protein 1 [Homo sapiens] 34 0.31
>gi|73760405 thymopoietin isoform beta [Homo sapiens]
Length = 454
Score = 895 bits (2313), Expect = 0.0
Identities = 454/454 (100%), Positives = 454/454 (100%)
Query: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
Sbjct: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
Query: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
Sbjct: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
Query: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
Sbjct: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
Query: 181 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQSYSQAGITETEWTSGSSKG 240
DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQSYSQAGITETEWTSGSSKG
Sbjct: 181 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQSYSQAGITETEWTSGSSKG 240
Query: 241 GPLQALTRESTRGSRRTPRKRVETSEHFRIDGPVISESTPIAETIMASSNESLVVNRVTG 300
GPLQALTRESTRGSRRTPRKRVETSEHFRIDGPVISESTPIAETIMASSNESLVVNRVTG
Sbjct: 241 GPLQALTRESTRGSRRTPRKRVETSEHFRIDGPVISESTPIAETIMASSNESLVVNRVTG 300
Query: 301 NFKHASPILPITEFSDIPRRAPKKPLTRAEVGEKTEERRVERDILKEMFPYEASTPTGIS 360
NFKHASPILPITEFSDIPRRAPKKPLTRAEVGEKTEERRVERDILKEMFPYEASTPTGIS
Sbjct: 301 NFKHASPILPITEFSDIPRRAPKKPLTRAEVGEKTEERRVERDILKEMFPYEASTPTGIS 360
Query: 361 ASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGRSIPVWIKILLF 420
ASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGRSIPVWIKILLF
Sbjct: 361 ASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGRSIPVWIKILLF 420
Query: 421 VVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN 454
VVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN
Sbjct: 421 VVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN 454
>gi|73760401 thymopoietin isoform gamma [Homo sapiens]
Length = 345
Score = 438 bits (1127), Expect = e-123
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
Sbjct: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
Query: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
Sbjct: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
Query: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
Sbjct: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
Query: 181 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ 221
DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ
Sbjct: 181 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ 221
Score = 253 bits (645), Expect = 3e-67
Identities = 175/361 (48%), Positives = 210/361 (58%), Gaps = 39/361 (10%)
Query: 111 DVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAE 170
D + LT + L +LV V G RK ++L Q +R+ PLP
Sbjct: 7 DPSVLTKDKLKSELVANNVTLP--AGEQRK---DVYVQLYLQHLTARNRPPLPA------ 55
Query: 171 NTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQ-RRVEHNQSYSQAGIT 229
T G D +S +EE + L GR++ V K ++ + + + +
Sbjct: 56 GTNSKGPPD---FSSDEEREPTPV-LGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLD 111
Query: 230 ETEWTSGSS---------KGGPLQALTRESTRGSRRTPRKRVETSEHFRIDGPVISESTP 280
TE T+ GP+ TR+ + K E R P+ + S+
Sbjct: 112 VTELTNEDLLDQLVKYGVNPGPIVGTTRKLYE---KKLLKLREQGTESRSSTPLPTISSS 168
Query: 281 IAETIMASSNESLVVNRVTGNFKHASPILPITEFSDIPRRAPKKPLT-------RAEVGE 333
T SN+S +R + N + + L + + + RA K P+T +VGE
Sbjct: 169 AENTRQNGSNDS---DRYSDNEEDSKIELKLEKREPLKGRA-KTPVTLKQRRVEHNQVGE 224
Query: 334 KTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPK 393
KTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPK
Sbjct: 225 KTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPK 284
Query: 394 YVPLADVKSEKTKKGRSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKS 453
YVPLADVKSEKTKKGRSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKS
Sbjct: 285 YVPLADVKSEKTKKGRSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKS 344
Query: 454 N 454
N
Sbjct: 345 N 345
>gi|4507555 thymopoietin isoform alpha [Homo sapiens]
Length = 694
Score = 378 bits (970), Expect = e-105
Identities = 192/198 (96%), Positives = 192/198 (96%)
Query: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
Sbjct: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
Query: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
Sbjct: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
Query: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
Sbjct: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
Query: 181 DRYSDNEEDSKIELKLEK 198
DRYSDNEE K E K K
Sbjct: 181 DRYSDNEEGKKKEHKKVK 198
>gi|7706607 LEM domain containing 3 [Homo sapiens]
Length = 911
Score = 48.9 bits (115), Expect = 9e-06
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 114 ELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTR 173
+L++E+L QL +YG++PGP+ +TR +Y KKL KLRE+ + S TR
Sbjct: 11 QLSDEELFSQLRRYGLSPGPVTESTRPVYLKKLKKLREEEQQQHRS------GGRGNKTR 64
Query: 174 QNGSNDS 180
+ +N++
Sbjct: 65 NSNNNNT 71
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 48.1 bits (113), Expect = 2e-05
Identities = 60/278 (21%), Positives = 103/278 (37%), Gaps = 33/278 (11%)
Query: 116 TNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQN 175
T +DL Q+ P P+V T+ LK R ES P S S +
Sbjct: 517 TQKDLTGQV------PTPVVKQTK-------LKQRADSRESLKPAAKPLPSKSVRKESKE 563
Query: 176 GSNDSDRYSDNEEDSKIELK----LEKREPLKGRAKTPVTLKQRRVEHNQSYSQAGITET 231
+ + + + E+ K+E K ++K +P+K K VT K+ + S +A + E
Sbjct: 564 ETPEVTKVNHVEKPPKVESKEKVMVKKDKPIKTETKPSVTEKEVPSKEEPSPVKAEVAEK 623
Query: 232 EWTSGSSKGGPLQALTRES------TRGSRRTPRKRVETSEHFRIDGPVISESTPIAETI 285
+ T K + + +E+ + + P+K V E P+ E P E +
Sbjct: 624 QATDVKPKAAKEKTVKKETKVKPEDKKEEKEKPKKEVAKKED---KTPIKKEEKPKKEEV 680
Query: 286 MASSNESLVVNRVTGNFKHASPILPITEFSDIPRRAPKKPLTRAEVGEKTEERRVERDIL 345
+ + K P E ++ KK + + E K E +++ +D
Sbjct: 681 KKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPKKEIKKLPKDAK 740
Query: 346 KEMFPY-EASTPTGISASCRRPIKG------AAGRPLE 376
K P EA P + + + AAG+P E
Sbjct: 741 KSSTPLSEAKKPAALKPKVPKKEESVKKDSVAAGKPKE 778
>gi|56676324 LEM domain containing 1 [Homo sapiens]
Length = 108
Score = 43.9 bits (102), Expect = 3e-04
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 110 LDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKL 149
+DV L++ L +QL K G +PGPI+ +TRKLYEKKL++L
Sbjct: 2 VDVKCLSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQL 41
>gi|4557553 emerin [Homo sapiens]
Length = 254
Score = 43.1 bits (100), Expect = 5e-04
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 114 ELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTR 173
+L++ +L L +Y + GP+VG+TR+LYEKK+ + Q R S P + +SS +
Sbjct: 6 DLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQ--RRRLSPPSSSAASSYSFSD 63
Query: 174 QNGS-NDSDRY 183
N + D+D Y
Sbjct: 64 LNSTRGDADMY 74
Score = 38.9 bits (89), Expect = 0.010
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 409 RSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPF 442
R +P+W ++LLF+V + LF +Y M+ + NPF
Sbjct: 221 RQVPLWGQLLLFLVFVIVLFFIYHFMQAEEGNPF 254
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 41.6 bits (96), Expect = 0.001
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 17/195 (8%)
Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL 110
PPLP G R +GS + RSR+ GR + K+ K R++ +
Sbjct: 101 PPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR-GRGSEKRKKKSRKDTSRNC 159
Query: 111 DVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAE 170
+ Q K PG + + E+ K R + S SS+ + SSS+
Sbjct: 160 SAST-------SQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSS 212
Query: 171 NTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQSYSQAGITE 230
++ + S+ R + K K +KR+ LK + K + E Q + G +
Sbjct: 213 SSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGK-------EKAEAQQVEALPGPSL 265
Query: 231 TEW--TSGSSKGGPL 243
+W ++G + GP+
Sbjct: 266 DQWHRSAGEEEDGPV 280
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 41.2 bits (95), Expect = 0.002
Identities = 55/252 (21%), Positives = 97/252 (38%), Gaps = 40/252 (15%)
Query: 52 PLPAGTNSKGPPDFSSDEEREP-TPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL 110
P+ + +S D SS+EE++P T + S A ++ +D ED +
Sbjct: 318 PVESSEDSSDESDSSSEEEKKPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSEDDEAP 377
Query: 111 DVTELTNEDLLDQ--------LVKYGVNPGPIVGTTRKLYEKKL---------LKLREQG 153
T ++ ++ VK P VG +KL +K E+
Sbjct: 378 SKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSEEESSSSEEEK 437
Query: 154 TESRSSTPLPTISSSAENT---------RQNGSNDSDRYSDNEEDSKIELKLEKREPLK- 203
T+ +T P ++ A + ++ S+DSD S EE+ K K++P K
Sbjct: 438 TKKMVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQKV 497
Query: 204 --GRAKT-PVTLKQRRVEHNQSYSQAGITETEWTSGSSKGGP---------LQALTREST 251
G A + P + K+ + E + S S +E E KG P ALT ++
Sbjct: 498 AGGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQAPKANGTSALTAQNG 557
Query: 252 RGSRRTPRKRVE 263
+ ++ + + E
Sbjct: 558 KAAKNSEEEEEE 569
Score = 34.3 bits (77), Expect = 0.24
Identities = 59/298 (19%), Positives = 103/298 (34%), Gaps = 54/298 (18%)
Query: 58 NSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTN 117
+S D S +EE P A A R G+ A K ++ E+ D D
Sbjct: 83 SSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAAAKASESSSSEESSDDD----DE 138
Query: 118 EDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGS 177
ED Q V+ GV P +++++ P + S++
Sbjct: 139 EDQKKQPVQKGVKP-----------------------QAKAAKAPPKKAKSSD------- 168
Query: 178 NDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLK-QRRVEHNQSYSQAGITETEWTSG 236
+DSD S++E + K+ TPVT+K Q + + + I + S
Sbjct: 169 SDSDSSSEDEPPKNQKPKI-----------TPVTVKAQTKAPPKPARAAPKIANGKAASS 217
Query: 237 SSKGGPLQALTRESTRGSRRTPRKRVETSEHFRIDGPVISESTPIAETIMASSNES---- 292
SS + + TP+K V + PV + +TP ++ + + S
Sbjct: 218 SSSSSSSSSSDDSEEEKAAATPKKTV-PKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEE 276
Query: 293 ---LVVNRVTGNFKHASPILPITEFSDIPRRAPKKPLTRAEVGEKTEERRVERDILKE 347
+ G + P + + PKK + + + E +E+ E D E
Sbjct: 277 EQKKPMKNKPGPYSSVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSE 334
>gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo
sapiens]
Length = 938
Score = 38.5 bits (88), Expect = 0.013
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 115 LTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLK-LREQG 153
L +DL +++VK G+ GPI TTR ++EKKL + L EQG
Sbjct: 75 LNPDDLREEIVKAGLKCGPITSTTRFIFEKKLAQALLEQG 114
>gi|5802992 cyclin I [Homo sapiens]
Length = 377
Score = 37.7 bits (86), Expect = 0.022
Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 19 ELVANNV-TLPAGEQRKDVYVQLYLQH-LTARNRPPLPAGTNSKGPPDFSSDEEREPTPV 76
ELVA+++ TL + VYV L+H L ++ +S PDFS D + PV
Sbjct: 241 ELVAHHLSTLQSSLPLNSVYVYRPLKHTLVTCDKGVFRLHPSSVPGPDFSKDNSKPEVPV 300
Query: 77 LGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL--DVTELTNEDLLDQLVKYGVNPGPI 134
G+ AA AA G K T K + + DD + L NED + + N G +
Sbjct: 301 RGT-AAFYHHLPAASGCKQTSTKRKVEEMEVDDFYDGIKRLYNEDNVSE------NVGSV 353
Query: 135 VGT 137
GT
Sbjct: 354 CGT 356
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 37.4 bits (85), Expect = 0.028
Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 25/195 (12%)
Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL 110
PPLP G R +GS + RSR+ GR + K+ K R++ +
Sbjct: 101 PPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR-GRGSEKRKKKSRKDTSRNC 159
Query: 111 DVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAE 170
+ + G T E+ K R + S SS+ + SSS+
Sbjct: 160 SAS---------------TSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSS 204
Query: 171 NTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQSYSQAGITE 230
++ + S+ R + K K +KR+ LK + K + E Q + G +
Sbjct: 205 SSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGK-------EKAEAQQVEALPGPSL 257
Query: 231 TEW--TSGSSKGGPL 243
+W ++G + GP+
Sbjct: 258 DQWHRSAGEEEDGPV 272
>gi|34482047 adaptor-related protein complex 3, beta 2 subunit [Homo
sapiens]
Length = 1082
Score = 37.0 bits (84), Expect = 0.037
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 154 TESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLK----GRAKTP 209
TES S P S ++++ ++GS +S SDNE+ + E K E + G+ KT
Sbjct: 688 TESADSDPESESESDSKSSSESGSGESSSESDNEDQDEDEEKGRGSESEQSEEDGKRKTK 747
Query: 210 VTLKQRRVEHNQ----SYSQAGITETEWTSGSSKGGPLQALTRESTRGSRRTP 258
+ +R+ E + S S + +E+E TS S + E SR+TP
Sbjct: 748 KKVPERKGEASSSDEGSDSSSSSSESEMTSESEEE------QLEPASWSRKTP 794
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 36.2 bits (82), Expect = 0.063
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 21/180 (11%)
Query: 94 KATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGT--TRKLYEKKLLKLRE 151
K +K ED+ D N D+LD ++ P T++ + L +L +
Sbjct: 2770 KRKRKQHYLSSEDEPD------DNPDVLDSRIETAQRQCPETEPHDTKEENSRDLEELPK 2823
Query: 152 QGTESRSSTPL-----PTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRA 206
+E+ S+T SSS + ND D EED I +K ++ P K
Sbjct: 2824 TSSETNSTTSRVMEEKDEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPV 2883
Query: 207 KTPVTLKQRRVEHNQSYSQAGITETEWTSGSSKGGPLQALTRESTRGSRRTPRKRVETSE 266
+T + +K + S + GI E + SSK +Q T ES + + + + +
Sbjct: 2884 ETTLKMK------DDSKTDTGIVTVEQSPSSSKLKVMQ--TDESNKETANLQERSISNDD 2935
>gi|21450645 tetratricopeptide repeat domain 16 [Homo sapiens]
Length = 873
Score = 36.2 bits (82), Expect = 0.063
Identities = 46/232 (19%), Positives = 85/232 (36%), Gaps = 32/232 (13%)
Query: 60 KGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELT--N 117
+G P ++ EE + TP + + A + +K + ++E K +L +++ +
Sbjct: 544 QGEPLIATSEELKATPEIPQVKPGSSEGEAEAPEEEEEKEKEKKEEKKSELIPSKVASLS 603
Query: 118 EDLLDQLVKYGVNPGPIVGTTR------------------KLYEKKLLKLR--EQGTESR 157
+ LDQ GT+ + LLK + + G
Sbjct: 604 DSYLDQTSSASSMSFRTTGTSETEMSAICQEYRSTSATAVTFSDSSLLKTQSSDSGNNRE 663
Query: 158 SSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRV 217
+ + P + + RQ+ S S SK + + KR K +A +
Sbjct: 664 ALSHGPRKIKATQGQRQSLSKTEPTQSQRRNSSKTKATIHKRNSSKTKATQSQRRNSSKT 723
Query: 218 EHNQSYSQAGITETEWTSGSSKG--------GPLQALTR-ESTRGSRRTPRK 260
Q Q+ ++TE T G + GP Q ++ ++TR R+ PRK
Sbjct: 724 RATQGQGQSS-SKTEATQGQRQSSSEIEATQGPRQEPSKTKTTRSPRQRPRK 774
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 35.8 bits (81), Expect = 0.082
Identities = 62/292 (21%), Positives = 114/292 (39%), Gaps = 20/292 (6%)
Query: 107 KDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTIS 166
KDD +V LT E+ +++ G V + L EK+ LK E+GT +
Sbjct: 1316 KDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKK 1375
Query: 167 SSAENTRQNGSND-----SDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ 221
SS + R + + S R D +++SK + K R P + + P L ++ +
Sbjct: 1376 SSRKRKRDSDAGSSTPTTSTRSRDKDDESK-KQKKRGRPPAEKLSPNPPNLTKKM----K 1430
Query: 222 SYSQAGITETEWTSGSSKGGP-LQALTRESTRGSRRTPRKRVETSE-HFRIDGPVISEST 279
A I + +SG +Q +R+ RK V+ + RI
Sbjct: 1431 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLN 1490
Query: 280 PIAETIMASSNESLVVNRVTGNFKHASPILPITEFSDIPRRAPKKPLTRAEVGEKTEERR 339
+ + +M + N + G+ + I+ + F+ + ++ K+ + E E+ EE
Sbjct: 1491 DLEKDVMLLCQNAQTFN-LEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGE 1549
Query: 340 VE------RDI-LKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEE 384
E R + +K + + RRP +G+ +P+ D EE
Sbjct: 1550 EEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEE 1601
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 35.8 bits (81), Expect = 0.082
Identities = 62/292 (21%), Positives = 114/292 (39%), Gaps = 20/292 (6%)
Query: 107 KDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTIS 166
KDD +V LT E+ +++ G V + L EK+ LK E+GT +
Sbjct: 1349 KDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKK 1408
Query: 167 SSAENTRQNGSND-----SDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ 221
SS + R + + S R D +++SK + K R P + + P L ++ +
Sbjct: 1409 SSRKRKRDSDAGSSTPTTSTRSRDKDDESK-KQKKRGRPPAEKLSPNPPNLTKKM----K 1463
Query: 222 SYSQAGITETEWTSGSSKGGP-LQALTRESTRGSRRTPRKRVETSE-HFRIDGPVISEST 279
A I + +SG +Q +R+ RK V+ + RI
Sbjct: 1464 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLN 1523
Query: 280 PIAETIMASSNESLVVNRVTGNFKHASPILPITEFSDIPRRAPKKPLTRAEVGEKTEERR 339
+ + +M + N + G+ + I+ + F+ + ++ K+ + E E+ EE
Sbjct: 1524 DLEKDVMLLCQNAQTFN-LEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGE 1582
Query: 340 VE------RDI-LKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEE 384
E R + +K + + RRP +G+ +P+ D EE
Sbjct: 1583 EEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEE 1634
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 35.8 bits (81), Expect = 0.082
Identities = 62/292 (21%), Positives = 114/292 (39%), Gaps = 20/292 (6%)
Query: 107 KDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTIS 166
KDD +V LT E+ +++ G V + L EK+ LK E+GT +
Sbjct: 1349 KDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKK 1408
Query: 167 SSAENTRQNGSND-----SDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ 221
SS + R + + S R D +++SK + K R P + + P L ++ +
Sbjct: 1409 SSRKRKRDSDAGSSTPTTSTRSRDKDDESK-KQKKRGRPPAEKLSPNPPNLTKKM----K 1463
Query: 222 SYSQAGITETEWTSGSSKGGP-LQALTRESTRGSRRTPRKRVETSE-HFRIDGPVISEST 279
A I + +SG +Q +R+ RK V+ + RI
Sbjct: 1464 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLN 1523
Query: 280 PIAETIMASSNESLVVNRVTGNFKHASPILPITEFSDIPRRAPKKPLTRAEVGEKTEERR 339
+ + +M + N + G+ + I+ + F+ + ++ K+ + E E+ EE
Sbjct: 1524 DLEKDVMLLCQNAQTFN-LEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGE 1582
Query: 340 VE------RDI-LKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEE 384
E R + +K + + RRP +G+ +P+ D EE
Sbjct: 1583 EEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEE 1634
>gi|113425121 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 4 [Homo sapiens]
Length = 632
Score = 35.4 bits (80), Expect = 0.11
Identities = 54/232 (23%), Positives = 84/232 (36%), Gaps = 10/232 (4%)
Query: 42 LQHLTARNRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKAT-KKTD 100
L+ +NRP +PAG N + S E G +A G R AT K +
Sbjct: 17 LKEYWQKNRPRVPAGVNRNRKTNGSIPETATSGGCQPPGDSATGFHREGPTSSATLKDLE 76
Query: 101 KPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSST 160
P QE LD T + L + + + +L E+K Q E
Sbjct: 77 SPCQERAVVLDSTSVKISRLKNTIKSLKQQKKQV---EHQLEEEKKANNERQKAERELEV 133
Query: 161 PLPTISSSAE--NTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKG---RAKTPVTLKQR 215
+ T+ E NT S RY + EE + ++L+ KG RA + V ++
Sbjct: 134 QIQTLIIQKEELNTDLYHMERSLRYFE-EESKDLAVRLQHSLQCKGELERALSAVIATEK 192
Query: 216 RVEHNQSYSQAGITETEWTSGSSKGGPLQALTRESTRGSRRTPRKRVETSEH 267
+ + S TE E L+A + ++ +R E +EH
Sbjct: 193 KKANQLSSCSKAHTEWELEQSLQDQALLKAQLTQLKESFQQLQLERDECAEH 244
>gi|4758410 fragile X mental retardation syndrome related protein 2
[Homo sapiens]
Length = 673
Score = 35.0 bits (79), Expect = 0.14
Identities = 36/139 (25%), Positives = 46/139 (33%), Gaps = 21/139 (15%)
Query: 153 GTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTL 212
G S ST T S E + G D D + EE +R P GR + P
Sbjct: 444 GPSSDVSTASETESEKREEPNRAGPGDRDPPTRGEES--------RRRPTGGRGRGPPPA 495
Query: 213 KQRRVEHNQS-------------YSQAGITETEWTSGSSKGGPLQALTRESTRGSRRTPR 259
+ +N S YS +E E S G P A R RRT
Sbjct: 496 PRPTSRYNSSSISSVLKDPDSNPYSLLDTSEPEPPVDSEPGEPPPASARRRRSRRRRTDE 555
Query: 260 KRVETSEHFRIDGPVISES 278
R DGP ++E+
Sbjct: 556 DRTVMDGGLESDGPNMTEN 574
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 35.0 bits (79), Expect = 0.14
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 143 EKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPL 202
+KK K +++G S SS+P S++ + ++S + K + K + ++
Sbjct: 187 QKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRK 246
Query: 203 KGRAKTPVTLKQRRVEHNQSYSQAGITET 231
+ R+ TP K RR + S A ++T
Sbjct: 247 RSRSTTPAP-KSRRAHRSTSADSASSSDT 274
Score = 33.1 bits (74), Expect = 0.53
Identities = 60/298 (20%), Positives = 102/298 (34%), Gaps = 68/298 (22%)
Query: 8 PSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSKGPPDFSS 67
P+ LT ++ L N+T P V + Y + ++ R PPL S+ PP S
Sbjct: 2363 PASLTSARMAPALSGANLTSPR------VPLSAY-ERVSGRTSPPLLDRARSRTPPSAPS 2415
Query: 68 DE----EREPTPVLGSGAA----------------------------------AAGRSRA 89
ER P+P G A AG
Sbjct: 2416 QSRMTSERAPSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSL 2475
Query: 90 AVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKL 149
+ G AT + + + + D+ + G + + E+
Sbjct: 2476 SSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKER----- 2530
Query: 150 REQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLE---KREP----- 201
R + S SS+ + SSS+ ++ +GS+ SD E S + ++ E KR P
Sbjct: 2531 RSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSD-----SEGSSLPVQPEVALKRVPSPTPA 2585
Query: 202 -----LKGRAKTPVTLKQRRVEHNQSYSQAGITETEWTSGSSKGGPLQALTRESTRGS 254
+GR P K++R + S S + + + +S SS + + S+ S
Sbjct: 2586 PKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2643
>gi|239758038 PREDICTED: mucin 3A, cell surface associated, partial
[Homo sapiens]
Length = 909
Score = 34.7 bits (78), Expect = 0.18
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 208 TPVTLKQRRVEHNQSYSQAGITETEWTSGSSKGGPLQALTRESTRGSRRTPRKRVETSEH 267
T +T + S+S + IT TE TS S+ G T E+T S + + T+E
Sbjct: 169 TSITTTETPSSSTPSFSSS-ITTTETTSHSTPGFTSSITTTETTSHSTPSFTSSITTTET 227
Query: 268 FRIDGPVISESTPIAETIMASSNESLVVNRVTGNFKHASP 307
D P + S +ET S+ S + T H++P
Sbjct: 228 TSHDTPSFTSSITTSETPSHSTPSSTSLITTTKTTSHSTP 267
>gi|169164209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 34.7 bits (78), Expect = 0.18
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGR 93
PP A T+S+ PP + E P GSG AAG R +GR
Sbjct: 58 PPSHASTSSRSPPPRARRTEPAVPPSCGSGPGAAGALRMGLGR 100
>gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo
sapiens]
Length = 179
Score = 34.7 bits (78), Expect = 0.18
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGR 93
PP A T+S+ PP + E P GSG AAG R +GR
Sbjct: 58 PPSHASTSSRSPPPRARRTEPAVPPSCGSGPGAAGALRMGLGR 100
>gi|4507963 zinc finger protein 37 homolog [Homo sapiens]
Length = 630
Score = 34.7 bits (78), Expect = 0.18
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 25/160 (15%)
Query: 63 PDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLL- 121
PD S E+ P LG G + + + R K+TD Q+D D L+ + + LL
Sbjct: 78 PDMISKLEKGEAPWLGKGKRPSQGCPSKIARPKQKETDGKVQKDDDQLENIQKSQNKLLR 137
Query: 122 -------DQLVKYGVNPGPIVGTTRKLY------EKKLLKLREQGTESRSSTPLPTISSS 168
Q K G + G + G L+ +K+LLK G + + LP
Sbjct: 138 EVAVKKKTQAKKNGSDCGSL-GKKNNLHKKHVPSKKRLLKFESCGKILKQNLDLP----- 191
Query: 169 AENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKT 208
+ N R SD ++ K + KG+ +T
Sbjct: 192 -----DHSRNCVKRKSDAAKEHKKSFNHSLSDTRKGKKQT 226
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 34.3 bits (77), Expect = 0.24
Identities = 60/291 (20%), Positives = 112/291 (38%), Gaps = 19/291 (6%)
Query: 107 KDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTIS 166
KDD +V LT E+ +++ G V + L EK+ LK E+GT +
Sbjct: 1316 KDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKK 1375
Query: 167 SSAENTRQNGSND-----SDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ 221
SS + R + + S R D +++SK + K R P + + P L ++ +
Sbjct: 1376 SSRKRKRDSDAGSSTPTTSTRSRDKDDESK-KQKKRGRPPAEKLSPNPPNLTKKM----K 1430
Query: 222 SYSQAGITETEWTSGSSKGGPLQALTRESTRGSRRTPRKRVETSE-HFRIDGPVISESTP 280
A I + + +Q +R+ RK V+ + RI
Sbjct: 1431 KIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLND 1490
Query: 281 IAETIMASSNESLVVNRVTGNFKHASPILPITEFSDIPRRAPKKPLTRAEVGEKTEERRV 340
+ + +M + N + G+ + I+ + F+ + ++ K+ + E E+ EE
Sbjct: 1491 LEKDVMLLCQNAQTFN-LEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEE 1549
Query: 341 E------RDI-LKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEE 384
E R + +K + + RRP +G+ +P+ D EE
Sbjct: 1550 EGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEE 1600
>gi|113425119 PREDICTED: similar to golgi autoantigen, golgin
subfamily a, 8E isoform 2 [Homo sapiens]
Length = 631
Score = 34.3 bits (77), Expect = 0.24
Identities = 54/232 (23%), Positives = 84/232 (36%), Gaps = 10/232 (4%)
Query: 42 LQHLTARNRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKAT-KKTD 100
L+ +NRP +PAG N + S E G +A G R AT K +
Sbjct: 17 LKEYWQKNRPRVPAGVNRNRKTNGSIPETATSGGCQPPGDSATGFHREGPTSSATLKDLE 76
Query: 101 KPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSST 160
P QE LD T + L + + + +L E+K Q E
Sbjct: 77 SPCQERAVVLDSTSVKISRLKNTIKSLKQQKKQV---EHQLEEEKKANNERQKAERVLEV 133
Query: 161 PLPTISSSAE--NTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKG---RAKTPVTLKQR 215
+ T+ E NT S RY + EE + ++L+ KG RA + V ++
Sbjct: 134 QIQTLIIQKEELNTDLYHMERSLRYFE-EESKDLAVRLQHSLQCKGELERALSAVIATEK 192
Query: 216 RVEHNQSYSQAGITETEWTSGSSKGGPLQALTRESTRGSRRTPRKRVETSEH 267
+ + S TE E L+A + ++ +R E +EH
Sbjct: 193 KKANQLSSCSKAHTEWELEQSLQDQALLKAQLTQLKESFQQLQLERDECAEH 244
>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
Length = 3957
Score = 34.3 bits (77), Expect = 0.24
Identities = 59/313 (18%), Positives = 112/313 (35%), Gaps = 38/313 (12%)
Query: 54 PAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVT 113
P G+ +G P SS+E + L + S + +K+ ++T + ++ K T
Sbjct: 2214 PCGSLMEGTPQISSEESYKHEG-LAETPETSPESLSFSPKKSEEQTGETKESTK-----T 2267
Query: 114 ELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTR 173
E T E R E K G+E R +T +S E+ +
Sbjct: 2268 ETTTE-------------------IRSEKEHPTTKDITGGSEERGATVTEDSETSTESFQ 2308
Query: 174 QNGSNDSD------RYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQSYSQAG 227
+ + S R D + L E L A + +++ + +
Sbjct: 2309 KEATLGSPKDTSPKRQDDCTGSCSVALAKETPTGLTEEAACDEGQRTFGSSAHKTQTDSE 2368
Query: 228 ITETEWTSGSSKGGPLQALTRESTRGSRRTPRKRVETSEHFRIDGPVISESTPIAETIMA 287
+ E+ TS +K PL + ++ G+ P+ + + + + P + +E + A
Sbjct: 2369 VQESTATSDETKALPLPEASVKTDTGTESKPQGVIRSPQGLELALP-----SRDSEVLSA 2423
Query: 288 SSNESLVVNRVTGNFKHASPILPITEFSDIPRRAPKKPLTRAEVGEKTEERRVERDILKE 347
+++SL V+ ASP+L P PL + + E VE +
Sbjct: 2424 VADDSLAVSHKDS--LEASPVLEDNSSHKTPDSLEPSPLKESPCRDSLESSPVEPKMKAG 2481
Query: 348 MFPYEASTPTGIS 360
+FP P ++
Sbjct: 2482 IFPSHFPLPAAVA 2494
>gi|33354279 hypothetical protein LOC55425 [Homo sapiens]
Length = 340
Score = 34.3 bits (77), Expect = 0.24
Identities = 38/192 (19%), Positives = 76/192 (39%), Gaps = 34/192 (17%)
Query: 62 PPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLL 121
PP F ++ P P++G A G ++ +K+ K D P Q++ D + +ED++
Sbjct: 96 PPGFKKQDDSPPRPIIGP-ALPPGFIKST--QKSDKGRDDPGQQETDSSE-----DEDII 147
Query: 122 DQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSS------------- 168
+ GP+ +EK+ +++E+ T+ + P + S
Sbjct: 148 GPMPA----KGPVNYNVTTEFEKRAQRMKEKLTKGDDDSSKPIVRESWMTELPPEMKDFG 203
Query: 169 ---------AENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEH 219
A++T + S +D +D E +K + K K +R E
Sbjct: 204 LGPRTFKRRADDTSGDRSIWTDTPADRERKAKETQEARKSSSKKDEEHILSGRDKRLAEQ 263
Query: 220 NQSYSQAGITET 231
SY+++ +E+
Sbjct: 264 VSSYNESKRSES 275
>gi|21541824 transducin-like enhancer protein 1 [Homo sapiens]
Length = 770
Score = 33.9 bits (76), Expect = 0.31
Identities = 52/257 (20%), Positives = 88/257 (34%), Gaps = 54/257 (21%)
Query: 39 QLYLQHLTARNRPPLPAGTNSKG--PPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKAT 96
QL QHL+ + PP+P + G PP P LG A S A G+
Sbjct: 127 QLQAQHLSHGHGPPVPLTPHPSGLQPPGI---------PPLGGSAGLLALSSALSGQSHL 177
Query: 97 KKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTES 156
D + D + E GT+ L L+ GT+
Sbjct: 178 AIKDDKKHHDAEHHRDRE--------------------PGTSNSLLVPDSLR----GTDK 213
Query: 157 RSSTPLPTISSSAENTRQNGSNDSDRYSDNEE-DSKIELKLEKREPLKGRAKTPVTLKQR 215
R + P S+ + + + + S SD ++ D + + + +P RA + ++
Sbjct: 214 RRNGP--EFSNDIKKRKVDDKDSSHYDSDGDKSDDNLVVDVSNEDPSSPRASPAHSPREN 271
Query: 216 RVEHNQSYSQAGITETEWTSGSSKGGPLQALTRESTRGSRRTPRKRVETSEHFRIDGPVI 275
++ N+ + + T+ S+ T K E S H + PV+
Sbjct: 272 GIDKNRLLKKDASSSPASTASSASS----------------TSLKSKEMSLHEKASTPVL 315
Query: 276 SESTPIAETIMASSNES 292
STP + M + S
Sbjct: 316 KSSTPTPRSDMPTPGTS 332
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.129 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,101,128
Number of Sequences: 37866
Number of extensions: 887426
Number of successful extensions: 3751
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 3590
Number of HSP's gapped (non-prelim): 302
length of query: 454
length of database: 18,247,518
effective HSP length: 106
effective length of query: 348
effective length of database: 14,233,722
effective search space: 4953335256
effective search space used: 4953335256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.