Guide to the Human Genome
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Name: KIAA1704 Sequence: fasta or formatted (340aa) NCBI GI: 33354279
Description:

hypothetical protein LOC55425

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         20           2
 C cysteine            0.0          0           0
 D aspartate          12.4         42           8
 E glutamate           8.8         30           2
 F phenylalanine       3.5         12           2
 G glycine             6.5         22           1
 H histidine           1.2          4           2
 I isoleucine          3.5         12           2
 K lysine             10.9         37           2
 L leucine             5.0         17           1
 M methionine          2.1          7           1
 N asparagine          2.9         10           1
 P proline             8.5         29           2
 Q glutamine           3.5         12           2
 R arginine            7.4         25           2
 S serine             10.3         35           4
 T threonine           4.1         14           2
 V valine              1.8          6           1
 W tryptophan          0.6          2           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55425 
NOLC1                 0.037   nucleolar and coiled-body phosphoprotein 1 
PELP1                 0.037   proline, glutamic acid and leucine rich protein 1 [...
EIF5B                 0.036   eukaryotic translation initiation factor 5B 
IWS1                  0.034   IWS1 homolog 
ANKRD11               0.033   ankyrin repeat domain 11 
TRDN                  0.031   triadin 
MYT1L                 0.030   myelin transcription factor 1-like 
PPIG                  0.028   peptidylprolyl isomerase G 
ACRC                  0.028   ACRC protein 
BAT2D1                0.027   HBxAg transactivated protein 2 
BRD2                  0.027   bromodomain containing 2 
BRD2                  0.027   bromodomain containing 2 
NCL                   0.025   nucleolin 
ABCF1                 0.025   ATP-binding cassette, sub-family F, member 1 isoform...
SRCAP                 0.025   Snf2-related CBP activator protein 
BCORL1                0.025   BCL6 co-repressor-like 1 
FAM133B               0.025   hypothetical protein LOC257415 isoform 2 
FAM133B               0.025   hypothetical protein LOC257415 isoform 1 
CHD3                  0.025   chromodomain helicase DNA binding protein 3 isoform...
CTR9                  0.025   SH2 domain binding protein 1 
FAM21C                0.025   hypothetical protein LOC253725 
LRRC7                 0.025   leucine rich repeat containing 7 
C9orf86               0.024   Rab-like GTP-binding protein 1 isoform 1 
RBM25                 0.024   RNA binding motif protein 25 
LRRC68                0.024   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.024   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.024   PREDICTED: leucine rich repeat containing 68 
ATRX                  0.024   transcriptional regulator ATRX isoform 2 
ATRX                  0.024   transcriptional regulator ATRX isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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