Guide to the Human Genome
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Search of human proteins with 73760401

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|73760401 thymopoietin isoform gamma [Homo sapiens]
         (345 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|73760401 thymopoietin isoform gamma [Homo sapiens]                 682   0.0  
gi|73760405 thymopoietin isoform beta [Homo sapiens]                  438   e-123
gi|4507555 thymopoietin isoform alpha [Homo sapiens]                  378   e-105
gi|4557553 emerin [Homo sapiens]                                       62   6e-10
gi|7706607 LEM domain containing 3 [Homo sapiens]                      49   7e-06
gi|56676324 LEM domain containing 1 [Homo sapiens]                     44   2e-04
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa...    42   6e-04
gi|125656165 THO complex 2 [Homo sapiens]                              40   0.002
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]             39   0.005
gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo sa...    39   0.009
gi|5802992 cyclin I [Homo sapiens]                                     38   0.015
gi|14165274 golgi-associated microtubule-binding protein HOOK3 [...    37   0.020
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]             35   0.098
gi|169164209 PREDICTED: hypothetical protein [Homo sapiens]            35   0.13 
gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo ...    35   0.13 
gi|188536047 SWI/SNF-related matrix-associated actin-dependent r...    35   0.13 
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]    35   0.13 
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]    35   0.13 
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]          35   0.13 
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]          35   0.13 
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]          35   0.13 
gi|4507963 zinc finger protein 37 homolog [Homo sapiens]               35   0.13 
gi|58530840 desmoplakin isoform I [Homo sapiens]                       34   0.17 
gi|34304356 phosphatase and actin regulator 3 isoform 3 [Homo sa...    34   0.17 
gi|34304354 phosphatase and actin regulator 3 isoform 2 [Homo sa...    34   0.17 
gi|18087853 phosphatase and actin regulator 3 isoform 1 [Homo sa...    34   0.17 
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor...    34   0.17 
gi|87299628 biorientation of chromosomes in cell division 1-like...    34   0.17 
gi|33354279 hypothetical protein LOC55425 [Homo sapiens]               34   0.22 
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r...    33   0.29 

>gi|73760401 thymopoietin isoform gamma [Homo sapiens]
          Length = 345

 Score =  682 bits (1761), Expect = 0.0
 Identities = 345/345 (100%), Positives = 345/345 (100%)

Query: 1   MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
           MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
Sbjct: 1   MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60

Query: 61  GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
           GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
Sbjct: 61  GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120

Query: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
           LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
Sbjct: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180

Query: 181 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDILKEMF 240
           DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDILKEMF
Sbjct: 181 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDILKEMF 240

Query: 241 PYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGR 300
           PYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGR
Sbjct: 241 PYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGR 300

Query: 301 SIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN 345
           SIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN
Sbjct: 301 SIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN 345


>gi|73760405 thymopoietin isoform beta [Homo sapiens]
          Length = 454

 Score =  438 bits (1127), Expect = e-123
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
           MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
Sbjct: 1   MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60

Query: 61  GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
           GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
Sbjct: 61  GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120

Query: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
           LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
Sbjct: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180

Query: 181 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ 221
           DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ
Sbjct: 181 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ 221



 Score =  253 bits (645), Expect = 2e-67
 Identities = 175/361 (48%), Positives = 210/361 (58%), Gaps = 39/361 (10%)

Query: 7   DPSVLTKDKLKSELVANNVTLP--AGEQRK---DVYVQLYLQHLTARNRPPLPA------ 55
           D + LT + L  +LV   V      G  RK      ++L  Q   +R+  PLP       
Sbjct: 111 DVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAE 170

Query: 56  GTNSKGPPD---FSSDEEREPTPV-LGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLD 111
            T   G  D   +S +EE     + L       GR++  V  K  ++ +  +   +  + 
Sbjct: 171 NTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQ-RRVEHNQSYSQAGIT 229

Query: 112 VTELTNEDLLDQLVKYGVNPGPIVGTTRKLYE---KKLLKLREQGTESRSSTPLPTISSS 168
            TE T+              GP+   TR+      +   K  E     R   P+ + S+ 
Sbjct: 230 ETEWTSGSS---------KGGPLQALTRESTRGSRRTPRKRVETSEHFRIDGPVISESTP 280

Query: 169 AENTRQNGSNDS---DRYSDNEEDSKIELKLEKREPLKGRA-KTPVTLKQRRVEHNQVGE 224
              T    SN+S   +R + N + +   L + +   +  RA K P+T         +VGE
Sbjct: 281 IAETIMASSNESLVVNRVTGNFKHASPILPITEFSDIPRRAPKKPLT-------RAEVGE 333

Query: 225 KTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPK 284
           KTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPK
Sbjct: 334 KTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPK 393

Query: 285 YVPLADVKSEKTKKGRSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKS 344
           YVPLADVKSEKTKKGRSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKS
Sbjct: 394 YVPLADVKSEKTKKGRSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKS 453

Query: 345 N 345
           N
Sbjct: 454 N 454


>gi|4507555 thymopoietin isoform alpha [Homo sapiens]
          Length = 694

 Score =  378 bits (970), Expect = e-105
 Identities = 192/198 (96%), Positives = 192/198 (96%)

Query: 1   MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
           MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
Sbjct: 1   MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60

Query: 61  GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
           GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
Sbjct: 61  GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120

Query: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
           LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
Sbjct: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180

Query: 181 DRYSDNEEDSKIELKLEK 198
           DRYSDNEE  K E K  K
Sbjct: 181 DRYSDNEEGKKKEHKKVK 198


>gi|4557553 emerin [Homo sapiens]
          Length = 254

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 35/252 (13%)

Query: 114 ELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTR 173
           +L++ +L   L +Y +  GP+VG+TR+LYEKK+ +   Q    R S P  + +SS   + 
Sbjct: 6   DLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQ--RRRLSPPSSSAASSYSFSD 63

Query: 174 QNGS-NDSDRY-----------------SDNEEDSKIELKL----EKREPLKGRAKTPVT 211
            N +  D+D Y                  D  E+S    +     E   P +   ++  +
Sbjct: 64  LNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEPESAGPSRAVRQSVTS 123

Query: 212 LKQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDF 271
                  H+QV +       E +      P         S +  RP+  A+   L+LS +
Sbjct: 124 FPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYRPV-SASRSSLDLSYY 182

Query: 272 RMEES----FSSKYVPKYVPLADVKSEKTKKG------RSIPVWIKILLFVVVAVFLFLV 321
               S     SS     ++    ++ E    G      R +P+W ++LLF+V  + LF +
Sbjct: 183 PTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLGQDRQVPLWGQLLLFLVFVIVLFFI 242

Query: 322 YQAMETNQVNPF 333
           Y  M+  + NPF
Sbjct: 243 YHFMQAEEGNPF 254


>gi|7706607 LEM domain containing 3 [Homo sapiens]
          Length = 911

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 6/67 (8%)

Query: 114 ELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTR 173
           +L++E+L  QL +YG++PGP+  +TR +Y KKL KLRE+  +   S            TR
Sbjct: 11  QLSDEELFSQLRRYGLSPGPVTESTRPVYLKKLKKLREEEQQQHRS------GGRGNKTR 64

Query: 174 QNGSNDS 180
            + +N++
Sbjct: 65  NSNNNNT 71


>gi|56676324 LEM domain containing 1 [Homo sapiens]
          Length = 108

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 110 LDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKL 149
           +DV  L++  L +QL K G +PGPI+ +TRKLYEKKL++L
Sbjct: 2   VDVKCLSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQL 41


>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
           sapiens]
          Length = 699

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 66/273 (24%), Positives = 97/273 (35%), Gaps = 36/273 (13%)

Query: 58  NSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTN 117
           +S    D S +EE    P     A  A R     G+ A K ++    E+  D D      
Sbjct: 83  SSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAAAKASESSSSEESSDDD----DE 138

Query: 118 EDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTES---------------RSSTPL 162
           ED   Q V+ GV P            K      +  +E                ++ T  
Sbjct: 139 EDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPPKNQKPKITPVTVKAQTKA 198

Query: 163 PTISSSAENTRQNG-------SNDSDRYSDNEEDSKIELKLEKREPLKG-RAKTPV---T 211
           P   + A     NG       S+ S   SD+ E+ K     +K  P K   AK PV   T
Sbjct: 199 PPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPKKTVPKKQVVAKAPVKAAT 258

Query: 212 LKQRRVEHNQVGEKTEERRVERDILKEMFPYEA----STPTGISASCRRPIKGAAGR--P 265
              R+   ++     EE   ++ +  +  PY +    S P    +   +P K A  +  P
Sbjct: 259 TPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYSSVPPPSAPPPKKSLGTQPPKKAVEKQQP 318

Query: 266 LELSDFRMEESFSSKYVPKYVPLADVKSEKTKK 298
           +E S+   +ES SS    K  P   V S+ T K
Sbjct: 319 VESSEDSSDESDSSSEEEKKPPTKAVVSKATTK 351



 Score = 37.7 bits (86), Expect = 0.015
 Identities = 62/290 (21%), Positives = 104/290 (35%), Gaps = 33/290 (11%)

Query: 52  PLPAGTNSKGPPDFSSDEEREP-TPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL 110
           P+ +  +S    D SS+EE++P T  + S A             ++  +D    ED +  
Sbjct: 318 PVESSEDSSDESDSSSEEEKKPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSEDDEAP 377

Query: 111 DVTELTNEDLLDQ--------LVKYGVNPGPIVGTTRKLYEKKL---------LKLREQG 153
                T ++  ++         VK    P   VG  +KL  +K              E+ 
Sbjct: 378 SKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSEEESSSSEEEK 437

Query: 154 TESRSSTPLPTISSSAENT---------RQNGSNDSDRYSDNEEDSKIELKLEKREPLK- 203
           T+   +T  P  ++ A  +          ++ S+DSD  S  EE+ K      K++P K 
Sbjct: 438 TKKMVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQKV 497

Query: 204 --GRAKT-PVTLKQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPTGISASCRRPIKG 260
             G A + P + K+ + E +      +    E + LK         P     S      G
Sbjct: 498 AGGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQAPKANGTSALTAQNG 557

Query: 261 AAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGRSIPVWIKILL 310
            A +  E  +   E+  ++  V K   L   K  +  K    P   KI L
Sbjct: 558 KAAKNSE--EEEEEKKKAAVVVSKSGSLKKRKQNEAAKEAETPQAKKIKL 605


>gi|125656165 THO complex 2 [Homo sapiens]
          Length = 1593

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 55/253 (21%), Positives = 99/253 (39%), Gaps = 23/253 (9%)

Query: 31   EQRKDVYVQL--YLQHLTARNRPPLPAGT-NSKGPPDFSSDEEREPTPVLGSGAAAAGRS 87
            E+R D+Y     Y   L +R    +P    + K PP  ++    +  P  G  +++ G S
Sbjct: 1157 EKRPDLYALAMGYSGQLKSRKSYMIPENEFHHKDPPPRNAVASVQNGPGGGPSSSSIG-S 1215

Query: 88   RAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLL 147
             +     +T++TDK R+  +  +      +          G N G    + + + E    
Sbjct: 1216 ASKSDESSTEETDKSRERSQCGVKAVNKASSTTPKGNSSNG-NSGS--NSNKAVKENDKE 1272

Query: 148  KLREQGTESRSSTPLPTISSSA------ENTRQNGSNDSDRYSDNEE----DSKIELKLE 197
            K +E+  E +  TP  T  +        E  ++   N  ++  + +E      K + K +
Sbjct: 1273 KGKEKEKEKKEKTPATTPEARVLGKDGKEKPKEERPNKDEKARETKERTPKSDKEKEKFK 1332

Query: 198  KREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPTGISASCRRP 257
            K E  K   K   T+     +  Q  E+ +E   ERDI KEM      +   +    + P
Sbjct: 1333 KEEKAKDE-KFKTTVPNAESKSTQEREREKEPSRERDIAKEM-----KSKENVKGGEKTP 1386

Query: 258  IKGAAGRPLELSD 270
            + G+   P+  SD
Sbjct: 1387 VSGSLKSPVPRSD 1399



 Score = 31.2 bits (69), Expect = 1.4
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 126  KYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSD 185
            K   +P P   +T K     L++L+E   +   +   P +S S E        D  R   
Sbjct: 1411 KIDTHPSPSHSSTVK---DSLIELKESSAKLYINHTPPPLSKSKEREMDKKDLDKSRERS 1467

Query: 186  NEEDSKIEL--KLEKREPLKGRAKTPVTLKQRRVEHN 220
             E + K E   K  KR+      + P  L +RR E N
Sbjct: 1468 REREKKDEKDRKERKRDHSNNDREVPPDLTKRRKEEN 1504



 Score = 30.8 bits (68), Expect = 1.9
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 143  EKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPL 202
            EK+  K  E+  + +  T +P       N     + + +R  +   +  I  +++ +E +
Sbjct: 1327 EKEKFKKEEKAKDEKFKTTVP-------NAESKSTQEREREKEPSRERDIAKEMKSKENV 1379

Query: 203  KGRAKTPVTLKQRR-VEHNQVGEKTEERRVERDILKEMFPYEAST 246
            KG  KTPV+   +  V  + + E   E++  R I     P  +ST
Sbjct: 1380 KGGEKTPVSGSLKSPVPRSDIPEPEREQK-RRKIDTHPSPSHSST 1423


>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
          Length = 360

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 51  PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL 110
           PPLP      G         R     +GS   +  RSR+  GR + K+  K R++   + 
Sbjct: 101 PPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR-GRGSEKRKKKSRKDTSRNC 159

Query: 111 DVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAE 170
             +         Q  K    PG     +  + E+   K R +   S SS+   + SSS+ 
Sbjct: 160 SAST-------SQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSS 212

Query: 171 NTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQ 214
           ++  + S+   R    +   K   K +KR+ LK + K     +Q
Sbjct: 213 SSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 256


>gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo
           sapiens]
          Length = 938

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 115 LTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLK-LREQG 153
           L  +DL +++VK G+  GPI  TTR ++EKKL + L EQG
Sbjct: 75  LNPDDLREEIVKAGLKCGPITSTTRFIFEKKLAQALLEQG 114


>gi|5802992 cyclin I [Homo sapiens]
          Length = 377

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 11/123 (8%)

Query: 19  ELVANNV-TLPAGEQRKDVYVQLYLQH-LTARNRPPLPAGTNSKGPPDFSSDEEREPTPV 76
           ELVA+++ TL +      VYV   L+H L   ++       +S   PDFS D  +   PV
Sbjct: 241 ELVAHHLSTLQSSLPLNSVYVYRPLKHTLVTCDKGVFRLHPSSVPGPDFSKDNSKPEVPV 300

Query: 77  LGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL--DVTELTNEDLLDQLVKYGVNPGPI 134
            G+ AA      AA G K T    K  + + DD    +  L NED + +      N G +
Sbjct: 301 RGT-AAFYHHLPAASGCKQTSTKRKVEEMEVDDFYDGIKRLYNEDNVSE------NVGSV 353

Query: 135 VGT 137
            GT
Sbjct: 354 CGT 356


>gi|14165274 golgi-associated microtubule-binding protein HOOK3
           [Homo sapiens]
          Length = 718

 Score = 37.4 bits (85), Expect = 0.020
 Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 5/131 (3%)

Query: 115 LTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQ 174
           L +++  D L    V P       R  +E K+LKL ++G+++     L ++   A N R+
Sbjct: 445 LGSQESSDSLAAEIVTPEIREKLIRLQHENKMLKLNQEGSDNEKIALLQSLLDDA-NLRK 503

Query: 175 NGSNDSDRYSDN---EEDSKIELKLEKREPLKGRAKTPVTLKQRRVEH-NQVGEKTEERR 230
           N     +R  +    E  S++E   +  +    +A+  V LK++  EH  ++ E   E +
Sbjct: 504 NELETENRLVNQRLLEVQSQVEELQKSLQDQGSKAEDSVLLKKKLEEHLEKLHEANNELQ 563

Query: 231 VERDILKEMFP 241
            +R I++++ P
Sbjct: 564 KKRAIIEDLEP 574


>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
          Length = 352

 Score = 35.0 bits (79), Expect = 0.098
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 16/164 (9%)

Query: 51  PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL 110
           PPLP      G         R     +GS   +  RSR+  GR + K+  K R++   + 
Sbjct: 101 PPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR-GRGSEKRKKKSRKDTSRNC 159

Query: 111 DVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAE 170
             +                + G    T     E+   K R +   S SS+   + SSS+ 
Sbjct: 160 SAS---------------TSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSS 204

Query: 171 NTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQ 214
           ++  + S+   R    +   K   K +KR+ LK + K     +Q
Sbjct: 205 SSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 248


>gi|169164209 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 179

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 18/43 (41%), Positives = 22/43 (51%)

Query: 51  PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGR 93
           PP  A T+S+ PP  +   E    P  GSG  AAG  R  +GR
Sbjct: 58  PPSHASTSSRSPPPRARRTEPAVPPSCGSGPGAAGALRMGLGR 100


>gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo
           sapiens]
          Length = 179

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 18/43 (41%), Positives = 22/43 (51%)

Query: 51  PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGR 93
           PP  A T+S+ PP  +   E    P  GSG  AAG  R  +GR
Sbjct: 58  PPSHASTSSRSPPPRARRTEPAVPPSCGSGPGAAGALRMGLGR 100


>gi|188536047 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin c1 [Homo sapiens]
          Length = 1105

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 8/145 (5%)

Query: 161 PLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHN 220
           P PT S      +   S    R S  EED + +L  +  +P      TPV   +  V   
Sbjct: 334 PTPTESRKKSGKKGQASLYGKRRSQKEEDEQEDLTKDMEDP------TPVPNIEEVVLPK 387

Query: 221 QVGEK--TEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFS 278
            V  K  +E   V+   + ++   +  T T        P KG   R ++L +  + E  +
Sbjct: 388 NVNLKKDSENTPVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSRSVDLGEDNVTEQTN 447

Query: 279 SKYVPKYVPLADVKSEKTKKGRSIP 303
              +P Y    D       + R++P
Sbjct: 448 HIIIPSYASWFDYNCIHVIERRALP 472



 Score = 29.3 bits (64), Expect = 5.4
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 6/111 (5%)

Query: 127 YGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSD- 185
           YG+    I GT     EK    L     E   + P       AEN  +N +++ D+  D 
Sbjct: 755 YGLESSCIAGTGPDEPEK----LEGAEEEKMEADPDGQQPEKAENKVENETDEGDKAQDG 810

Query: 186 -NEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDI 235
            NE++S+ E   E  E  K   K     K+      +    T +++VE +I
Sbjct: 811 ENEKNSEKEQDSEVSEDTKSEEKETEENKELTDTCKERESDTGKKKVEHEI 861


>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
          Length = 2454

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 18/122 (14%)

Query: 145  KLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKRE---- 200
            K  +L E     +       I    +++ +N SN  +   + EE+ + E + E+ E    
Sbjct: 1370 KKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDEN 1429

Query: 201  -----PLKGRAKTPVTLKQRRVE---HNQVGEKTE------ERRVERDILKEMFPYEAST 246
                 P KGR K    LK  ++     N + E+ E      ER  ER+ L+E+   E ++
Sbjct: 1430 DDSKSPGKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAEREREREKLREVIEIEDAS 1489

Query: 247  PT 248
            PT
Sbjct: 1490 PT 1491


>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
          Length = 2492

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 18/122 (14%)

Query: 145  KLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKRE---- 200
            K  +L E     +       I    +++ +N SN  +   + EE+ + E + E+ E    
Sbjct: 1408 KKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDEN 1467

Query: 201  -----PLKGRAKTPVTLKQRRVE---HNQVGEKTE------ERRVERDILKEMFPYEAST 246
                 P KGR K    LK  ++     N + E+ E      ER  ER+ L+E+   E ++
Sbjct: 1468 DDSKSPGKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAEREREREKLREVIEIEDAS 1527

Query: 247  PT 248
            PT
Sbjct: 1528 PT 1529


>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
          Length = 1012

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 153 GTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTL 212
           G + + ++P    S   E+ R +G N     S +  DSK E   +  + +K  A +P  L
Sbjct: 33  GRKKQPASPDGRTSPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEASSP--L 90

Query: 213 KQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPTGIS 251
           K  + +  +V   TEE   +R   K+    E S P   S
Sbjct: 91  KSNKRQREKVASDTEE--ADRTSSKKTKTQEISRPNSPS 127


>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 153 GTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTL 212
           G + + ++P    S   E+ R +G N     S +  DSK E   +  + +K  A +P  L
Sbjct: 587 GRKKQPASPDGRTSPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEASSP--L 644

Query: 213 KQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPTGIS 251
           K  + +  +V   TEE   +R   K+    E S P   S
Sbjct: 645 KSNKRQREKVASDTEE--ADRTSSKKTKTQEISRPNSPS 681


>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 153 GTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTL 212
           G + + ++P    S   E+ R +G N     S +  DSK E   +  + +K  A +P  L
Sbjct: 587 GRKKQPASPDGRTSPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEASSP--L 644

Query: 213 KQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPTGIS 251
           K  + +  +V   TEE   +R   K+    E S P   S
Sbjct: 645 KSNKRQREKVASDTEE--ADRTSSKKTKTQEISRPNSPS 681


>gi|4507963 zinc finger protein 37 homolog [Homo sapiens]
          Length = 630

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 25/160 (15%)

Query: 63  PDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLL- 121
           PD  S  E+   P LG G   +    + + R   K+TD   Q+D D L+  + +   LL 
Sbjct: 78  PDMISKLEKGEAPWLGKGKRPSQGCPSKIARPKQKETDGKVQKDDDQLENIQKSQNKLLR 137

Query: 122 -------DQLVKYGVNPGPIVGTTRKLY------EKKLLKLREQGTESRSSTPLPTISSS 168
                   Q  K G + G + G    L+      +K+LLK    G   + +  LP     
Sbjct: 138 EVAVKKKTQAKKNGSDCGSL-GKKNNLHKKHVPSKKRLLKFESCGKILKQNLDLP----- 191

Query: 169 AENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKT 208
                 +  N   R SD  ++ K        +  KG+ +T
Sbjct: 192 -----DHSRNCVKRKSDAAKEHKKSFNHSLSDTRKGKKQT 226


>gi|58530840 desmoplakin isoform I [Homo sapiens]
          Length = 2871

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 24/142 (16%)

Query: 101  KPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIV----GTTRKLYEKKLLKLREQGTES 156
            K RQ +K++L   +L +E  + +  +Y +    ++    GT ++ YE +L K+R    E 
Sbjct: 1144 KARQCEKENLGWQKLESEKAIKEK-EYEIERLRVLLQEEGTRKREYENELAKVRNHYNEE 1202

Query: 157  RSS-------------TPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLK 203
             S+             T +  IS   E+  +N  N  DR S    D K E+       L+
Sbjct: 1203 MSNLRNKYETEINITKTTIKEISMQKEDDSKNLRNQLDRLSRENRDLKDEIVRLNDSILQ 1262

Query: 204  GRAKTPVTLKQRRVEHNQVGEK 225
                   T ++RR E N + +K
Sbjct: 1263 ------ATEQRRRAEENALQQK 1278


>gi|34304356 phosphatase and actin regulator 3 isoform 3 [Homo
           sapiens]
          Length = 448

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 34/206 (16%)

Query: 45  LTARNRPPLPAGTNSKGPPDFSSDEEREPTPVL--GSGAAAAGRSRAAVGRKATKKTDKP 102
           L  ++R     G  SKG P    D     T  +  G     A     A+  K T    K 
Sbjct: 190 LATKHRQDSFQGRESKGSPKKRLDVRLSRTSSVERGKEREEAWSFDGALENKRTAA--KE 247

Query: 103 RQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLL--KLR----EQGTES 156
            +E+K++L +     +DLL    +  +N   I GT  +  +K+LL  KLR    +Q  E 
Sbjct: 248 SEENKENLIINSELKDDLLLYQDEEALNDSIISGTLPRKCKKELLAVKLRNRPSKQELED 307

Query: 157 RSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKR---EPLKGRAKTPVTLK 213
           R+  P  T              D +R    E   +IE+KL KR    P     +    LK
Sbjct: 308 RNIFPRRT--------------DEER---QEIRQQIEMKLSKRLSQRPAVEELERRNILK 350

Query: 214 QRRVEHNQVGEKTEERRVERDILKEM 239
           QR    N   E+ E R +++ + +++
Sbjct: 351 QR----NDQTEQEERREIKQRLTRKL 372


>gi|34304354 phosphatase and actin regulator 3 isoform 2 [Homo
           sapiens]
          Length = 518

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 34/206 (16%)

Query: 45  LTARNRPPLPAGTNSKGPPDFSSDEEREPTPVL--GSGAAAAGRSRAAVGRKATKKTDKP 102
           L  ++R     G  SKG P    D     T  +  G     A     A+  K T    K 
Sbjct: 260 LATKHRQDSFQGRESKGSPKKRLDVRLSRTSSVERGKEREEAWSFDGALENKRTAA--KE 317

Query: 103 RQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLL--KLR----EQGTES 156
            +E+K++L +     +DLL    +  +N   I GT  +  +K+LL  KLR    +Q  E 
Sbjct: 318 SEENKENLIINSELKDDLLLYQDEEALNDSIISGTLPRKCKKELLAVKLRNRPSKQELED 377

Query: 157 RSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKR---EPLKGRAKTPVTLK 213
           R+  P  T              D +R    E   +IE+KL KR    P     +    LK
Sbjct: 378 RNIFPRRT--------------DEER---QEIRQQIEMKLSKRLSQRPAVEELERRNILK 420

Query: 214 QRRVEHNQVGEKTEERRVERDILKEM 239
           QR    N   E+ E R +++ + +++
Sbjct: 421 QR----NDQTEQEERREIKQRLTRKL 442


>gi|18087853 phosphatase and actin regulator 3 isoform 1 [Homo
           sapiens]
          Length = 559

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 34/206 (16%)

Query: 45  LTARNRPPLPAGTNSKGPPDFSSDEEREPTPVL--GSGAAAAGRSRAAVGRKATKKTDKP 102
           L  ++R     G  SKG P    D     T  +  G     A     A+  K T    K 
Sbjct: 301 LATKHRQDSFQGRESKGSPKKRLDVRLSRTSSVERGKEREEAWSFDGALENKRTAA--KE 358

Query: 103 RQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLL--KLR----EQGTES 156
            +E+K++L +     +DLL    +  +N   I GT  +  +K+LL  KLR    +Q  E 
Sbjct: 359 SEENKENLIINSELKDDLLLYQDEEALNDSIISGTLPRKCKKELLAVKLRNRPSKQELED 418

Query: 157 RSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKR---EPLKGRAKTPVTLK 213
           R+  P  T              D +R    E   +IE+KL KR    P     +    LK
Sbjct: 419 RNIFPRRT--------------DEER---QEIRQQIEMKLSKRLSQRPAVEELERRNILK 461

Query: 214 QRRVEHNQVGEKTEERRVERDILKEM 239
           QR    N   E+ E R +++ + +++
Sbjct: 462 QR----NDQTEQEERREIKQRLTRKL 483


>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 3 [Homo sapiens]
          Length = 568

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 118 EDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGS 177
           ED   +L+K G +P   + T+               + S SS+   + SSS+ ++  + S
Sbjct: 129 EDFRRKLLKAGGDPNRSIHTSSS-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 181

Query: 178 NDSDRYSDNEEDSKIE--LKLEKREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDI 235
           + S   S +   SK    +K  K +P K   +     K+   +HN+  +++ ++  E   
Sbjct: 182 SSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENKP 241

Query: 236 LKE 238
           LKE
Sbjct: 242 LKE 244


>gi|87299628 biorientation of chromosomes in cell division 1-like
            [Homo sapiens]
          Length = 3051

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 15/162 (9%)

Query: 94   KATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGT--TRKLYEKKLLKLRE 151
            K  +K      ED+ D       N D+LD  ++      P      T++   + L +L +
Sbjct: 2770 KRKRKQHYLSSEDEPD------DNPDVLDSRIETAQRQCPETEPHDTKEENSRDLEELPK 2823

Query: 152  QGTESRSSTPL-----PTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRA 206
              +E+ S+T          SSS     +   ND D     EED  I +K ++  P K   
Sbjct: 2824 TSSETNSTTSRVMEEKDEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPV 2883

Query: 207  KTPVTLKQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPT 248
            +T  TLK +       G  T E+      LK M   E++  T
Sbjct: 2884 ET--TLKMKDDSKTDTGIVTVEQSPSSSKLKVMQTDESNKET 2923


>gi|33354279 hypothetical protein LOC55425 [Homo sapiens]
          Length = 340

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 12/107 (11%)

Query: 62  PPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLL 121
           PP F   ++  P P++G  A   G  ++   +K+ K  D P Q++ D  +     +ED++
Sbjct: 96  PPGFKKQDDSPPRPIIGP-ALPPGFIKST--QKSDKGRDDPGQQETDSSE-----DEDII 147

Query: 122 DQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSS 168
             +       GP+       +EK+  +++E+ T+    +  P +  S
Sbjct: 148 GPMPA----KGPVNYNVTTEFEKRAQRMKEKLTKGDDDSSKPIVRES 190



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)

Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLG 78
          P LP G  ++G  +   DEER+P+PV G
Sbjct: 8  PALPPGFKARGTAE---DEERDPSPVAG 32


>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform F [Homo sapiens]
          Length = 1613

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 107  KDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTIS 166
            KDD +V  LT E+  +++   G      V  +  L EK+ LK  E+GT       +    
Sbjct: 1316 KDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKK 1375

Query: 167  SSAENTRQNGSND-----SDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQR 215
            SS +  R + +       S R  D +++SK + K   R P +  +  P  L ++
Sbjct: 1376 SSRKRKRDSDAGSSTPTTSTRSRDKDDESK-KQKKRGRPPAEKLSPNPPNLTKK 1428


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,961,260
Number of Sequences: 37866
Number of extensions: 691844
Number of successful extensions: 3310
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 3114
Number of HSP's gapped (non-prelim): 320
length of query: 345
length of database: 18,247,518
effective HSP length: 103
effective length of query: 242
effective length of database: 14,347,320
effective search space: 3472051440
effective search space used: 3472051440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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