BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|73760401 thymopoietin isoform gamma [Homo sapiens] (345 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|73760401 thymopoietin isoform gamma [Homo sapiens] 682 0.0 gi|73760405 thymopoietin isoform beta [Homo sapiens] 438 e-123 gi|4507555 thymopoietin isoform alpha [Homo sapiens] 378 e-105 gi|4557553 emerin [Homo sapiens] 62 6e-10 gi|7706607 LEM domain containing 3 [Homo sapiens] 49 7e-06 gi|56676324 LEM domain containing 1 [Homo sapiens] 44 2e-04 gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 42 6e-04 gi|125656165 THO complex 2 [Homo sapiens] 40 0.002 gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 39 0.005 gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo sa... 39 0.009 gi|5802992 cyclin I [Homo sapiens] 38 0.015 gi|14165274 golgi-associated microtubule-binding protein HOOK3 [... 37 0.020 gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 35 0.098 gi|169164209 PREDICTED: hypothetical protein [Homo sapiens] 35 0.13 gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo ... 35 0.13 gi|188536047 SWI/SNF-related matrix-associated actin-dependent r... 35 0.13 gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 35 0.13 gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 35 0.13 gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 35 0.13 gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 35 0.13 gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 35 0.13 gi|4507963 zinc finger protein 37 homolog [Homo sapiens] 35 0.13 gi|58530840 desmoplakin isoform I [Homo sapiens] 34 0.17 gi|34304356 phosphatase and actin regulator 3 isoform 3 [Homo sa... 34 0.17 gi|34304354 phosphatase and actin regulator 3 isoform 2 [Homo sa... 34 0.17 gi|18087853 phosphatase and actin regulator 3 isoform 1 [Homo sa... 34 0.17 gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 34 0.17 gi|87299628 biorientation of chromosomes in cell division 1-like... 34 0.17 gi|33354279 hypothetical protein LOC55425 [Homo sapiens] 34 0.22 gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 33 0.29 >gi|73760401 thymopoietin isoform gamma [Homo sapiens] Length = 345 Score = 682 bits (1761), Expect = 0.0 Identities = 345/345 (100%), Positives = 345/345 (100%) Query: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK Sbjct: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60 Query: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL Sbjct: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120 Query: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS Sbjct: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180 Query: 181 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDILKEMF 240 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDILKEMF Sbjct: 181 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDILKEMF 240 Query: 241 PYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGR 300 PYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGR Sbjct: 241 PYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGR 300 Query: 301 SIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN 345 SIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN Sbjct: 301 SIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN 345 >gi|73760405 thymopoietin isoform beta [Homo sapiens] Length = 454 Score = 438 bits (1127), Expect = e-123 Identities = 221/221 (100%), Positives = 221/221 (100%) Query: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK Sbjct: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60 Query: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL Sbjct: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120 Query: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS Sbjct: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180 Query: 181 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ 221 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ Sbjct: 181 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ 221 Score = 253 bits (645), Expect = 2e-67 Identities = 175/361 (48%), Positives = 210/361 (58%), Gaps = 39/361 (10%) Query: 7 DPSVLTKDKLKSELVANNVTLP--AGEQRK---DVYVQLYLQHLTARNRPPLPA------ 55 D + LT + L +LV V G RK ++L Q +R+ PLP Sbjct: 111 DVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAE 170 Query: 56 GTNSKGPPD---FSSDEEREPTPV-LGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLD 111 T G D +S +EE + L GR++ V K ++ + + + + Sbjct: 171 NTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQ-RRVEHNQSYSQAGIT 229 Query: 112 VTELTNEDLLDQLVKYGVNPGPIVGTTRKLYE---KKLLKLREQGTESRSSTPLPTISSS 168 TE T+ GP+ TR+ + K E R P+ + S+ Sbjct: 230 ETEWTSGSS---------KGGPLQALTRESTRGSRRTPRKRVETSEHFRIDGPVISESTP 280 Query: 169 AENTRQNGSNDS---DRYSDNEEDSKIELKLEKREPLKGRA-KTPVTLKQRRVEHNQVGE 224 T SN+S +R + N + + L + + + RA K P+T +VGE Sbjct: 281 IAETIMASSNESLVVNRVTGNFKHASPILPITEFSDIPRRAPKKPLT-------RAEVGE 333 Query: 225 KTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPK 284 KTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPK Sbjct: 334 KTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPK 393 Query: 285 YVPLADVKSEKTKKGRSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKS 344 YVPLADVKSEKTKKGRSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKS Sbjct: 394 YVPLADVKSEKTKKGRSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKS 453 Query: 345 N 345 N Sbjct: 454 N 454 >gi|4507555 thymopoietin isoform alpha [Homo sapiens] Length = 694 Score = 378 bits (970), Expect = e-105 Identities = 192/198 (96%), Positives = 192/198 (96%) Query: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK Sbjct: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60 Query: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL Sbjct: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120 Query: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS Sbjct: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180 Query: 181 DRYSDNEEDSKIELKLEK 198 DRYSDNEE K E K K Sbjct: 181 DRYSDNEEGKKKEHKKVK 198 >gi|4557553 emerin [Homo sapiens] Length = 254 Score = 62.4 bits (150), Expect = 6e-10 Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 35/252 (13%) Query: 114 ELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTR 173 +L++ +L L +Y + GP+VG+TR+LYEKK+ + Q R S P + +SS + Sbjct: 6 DLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQ--RRRLSPPSSSAASSYSFSD 63 Query: 174 QNGS-NDSDRY-----------------SDNEEDSKIELKL----EKREPLKGRAKTPVT 211 N + D+D Y D E+S + E P + ++ + Sbjct: 64 LNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEPESAGPSRAVRQSVTS 123 Query: 212 LKQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDF 271 H+QV + E + P S + RP+ A+ L+LS + Sbjct: 124 FPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYRPV-SASRSSLDLSYY 182 Query: 272 RMEES----FSSKYVPKYVPLADVKSEKTKKG------RSIPVWIKILLFVVVAVFLFLV 321 S SS ++ ++ E G R +P+W ++LLF+V + LF + Sbjct: 183 PTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLGQDRQVPLWGQLLLFLVFVIVLFFI 242 Query: 322 YQAMETNQVNPF 333 Y M+ + NPF Sbjct: 243 YHFMQAEEGNPF 254 >gi|7706607 LEM domain containing 3 [Homo sapiens] Length = 911 Score = 48.9 bits (115), Expect = 7e-06 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 6/67 (8%) Query: 114 ELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTR 173 +L++E+L QL +YG++PGP+ +TR +Y KKL KLRE+ + S TR Sbjct: 11 QLSDEELFSQLRRYGLSPGPVTESTRPVYLKKLKKLREEEQQQHRS------GGRGNKTR 64 Query: 174 QNGSNDS 180 + +N++ Sbjct: 65 NSNNNNT 71 >gi|56676324 LEM domain containing 1 [Homo sapiens] Length = 108 Score = 43.9 bits (102), Expect = 2e-04 Identities = 22/40 (55%), Positives = 31/40 (77%) Query: 110 LDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKL 149 +DV L++ L +QL K G +PGPI+ +TRKLYEKKL++L Sbjct: 2 VDVKCLSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQL 41 >gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sapiens] Length = 699 Score = 42.4 bits (98), Expect = 6e-04 Identities = 66/273 (24%), Positives = 97/273 (35%), Gaps = 36/273 (13%) Query: 58 NSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTN 117 +S D S +EE P A A R G+ A K ++ E+ D D Sbjct: 83 SSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAAAKASESSSSEESSDDD----DE 138 Query: 118 EDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTES---------------RSSTPL 162 ED Q V+ GV P K + +E ++ T Sbjct: 139 EDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPPKNQKPKITPVTVKAQTKA 198 Query: 163 PTISSSAENTRQNG-------SNDSDRYSDNEEDSKIELKLEKREPLKG-RAKTPV---T 211 P + A NG S+ S SD+ E+ K +K P K AK PV T Sbjct: 199 PPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPKKTVPKKQVVAKAPVKAAT 258 Query: 212 LKQRRVEHNQVGEKTEERRVERDILKEMFPYEA----STPTGISASCRRPIKGAAGR--P 265 R+ ++ EE ++ + + PY + S P + +P K A + P Sbjct: 259 TPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYSSVPPPSAPPPKKSLGTQPPKKAVEKQQP 318 Query: 266 LELSDFRMEESFSSKYVPKYVPLADVKSEKTKK 298 +E S+ +ES SS K P V S+ T K Sbjct: 319 VESSEDSSDESDSSSEEEKKPPTKAVVSKATTK 351 Score = 37.7 bits (86), Expect = 0.015 Identities = 62/290 (21%), Positives = 104/290 (35%), Gaps = 33/290 (11%) Query: 52 PLPAGTNSKGPPDFSSDEEREP-TPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL 110 P+ + +S D SS+EE++P T + S A ++ +D ED + Sbjct: 318 PVESSEDSSDESDSSSEEEKKPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSEDDEAP 377 Query: 111 DVTELTNEDLLDQ--------LVKYGVNPGPIVGTTRKLYEKKL---------LKLREQG 153 T ++ ++ VK P VG +KL +K E+ Sbjct: 378 SKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSEEESSSSEEEK 437 Query: 154 TESRSSTPLPTISSSAENT---------RQNGSNDSDRYSDNEEDSKIELKLEKREPLK- 203 T+ +T P ++ A + ++ S+DSD S EE+ K K++P K Sbjct: 438 TKKMVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQKV 497 Query: 204 --GRAKT-PVTLKQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPTGISASCRRPIKG 260 G A + P + K+ + E + + E + LK P S G Sbjct: 498 AGGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQAPKANGTSALTAQNG 557 Query: 261 AAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGRSIPVWIKILL 310 A + E + E+ ++ V K L K + K P KI L Sbjct: 558 KAAKNSE--EEEEEKKKAAVVVSKSGSLKKRKQNEAAKEAETPQAKKIKL 605 >gi|125656165 THO complex 2 [Homo sapiens] Length = 1593 Score = 40.4 bits (93), Expect = 0.002 Identities = 55/253 (21%), Positives = 99/253 (39%), Gaps = 23/253 (9%) Query: 31 EQRKDVYVQL--YLQHLTARNRPPLPAGT-NSKGPPDFSSDEEREPTPVLGSGAAAAGRS 87 E+R D+Y Y L +R +P + K PP ++ + P G +++ G S Sbjct: 1157 EKRPDLYALAMGYSGQLKSRKSYMIPENEFHHKDPPPRNAVASVQNGPGGGPSSSSIG-S 1215 Query: 88 RAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLL 147 + +T++TDK R+ + + + G N G + + + E Sbjct: 1216 ASKSDESSTEETDKSRERSQCGVKAVNKASSTTPKGNSSNG-NSGS--NSNKAVKENDKE 1272 Query: 148 KLREQGTESRSSTPLPTISSSA------ENTRQNGSNDSDRYSDNEE----DSKIELKLE 197 K +E+ E + TP T + E ++ N ++ + +E K + K + Sbjct: 1273 KGKEKEKEKKEKTPATTPEARVLGKDGKEKPKEERPNKDEKARETKERTPKSDKEKEKFK 1332 Query: 198 KREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPTGISASCRRP 257 K E K K T+ + Q E+ +E ERDI KEM + + + P Sbjct: 1333 KEEKAKDE-KFKTTVPNAESKSTQEREREKEPSRERDIAKEM-----KSKENVKGGEKTP 1386 Query: 258 IKGAAGRPLELSD 270 + G+ P+ SD Sbjct: 1387 VSGSLKSPVPRSD 1399 Score = 31.2 bits (69), Expect = 1.4 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 5/97 (5%) Query: 126 KYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSD 185 K +P P +T K L++L+E + + P +S S E D R Sbjct: 1411 KIDTHPSPSHSSTVK---DSLIELKESSAKLYINHTPPPLSKSKEREMDKKDLDKSRERS 1467 Query: 186 NEEDSKIEL--KLEKREPLKGRAKTPVTLKQRRVEHN 220 E + K E K KR+ + P L +RR E N Sbjct: 1468 REREKKDEKDRKERKRDHSNNDREVPPDLTKRRKEEN 1504 Score = 30.8 bits (68), Expect = 1.9 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 9/105 (8%) Query: 143 EKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPL 202 EK+ K E+ + + T +P N + + +R + + I +++ +E + Sbjct: 1327 EKEKFKKEEKAKDEKFKTTVP-------NAESKSTQEREREKEPSRERDIAKEMKSKENV 1379 Query: 203 KGRAKTPVTLKQRR-VEHNQVGEKTEERRVERDILKEMFPYEAST 246 KG KTPV+ + V + + E E++ R I P +ST Sbjct: 1380 KGGEKTPVSGSLKSPVPRSDIPEPEREQK-RRKIDTHPSPSHSST 1423 >gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] Length = 360 Score = 39.3 bits (90), Expect = 0.005 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 8/164 (4%) Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL 110 PPLP G R +GS + RSR+ GR + K+ K R++ + Sbjct: 101 PPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR-GRGSEKRKKKSRKDTSRNC 159 Query: 111 DVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAE 170 + Q K PG + + E+ K R + S SS+ + SSS+ Sbjct: 160 SAST-------SQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSS 212 Query: 171 NTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQ 214 ++ + S+ R + K K +KR+ LK + K +Q Sbjct: 213 SSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 256 >gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo sapiens] Length = 938 Score = 38.5 bits (88), Expect = 0.009 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 115 LTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLK-LREQG 153 L +DL +++VK G+ GPI TTR ++EKKL + L EQG Sbjct: 75 LNPDDLREEIVKAGLKCGPITSTTRFIFEKKLAQALLEQG 114 >gi|5802992 cyclin I [Homo sapiens] Length = 377 Score = 37.7 bits (86), Expect = 0.015 Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 11/123 (8%) Query: 19 ELVANNV-TLPAGEQRKDVYVQLYLQH-LTARNRPPLPAGTNSKGPPDFSSDEEREPTPV 76 ELVA+++ TL + VYV L+H L ++ +S PDFS D + PV Sbjct: 241 ELVAHHLSTLQSSLPLNSVYVYRPLKHTLVTCDKGVFRLHPSSVPGPDFSKDNSKPEVPV 300 Query: 77 LGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL--DVTELTNEDLLDQLVKYGVNPGPI 134 G+ AA AA G K T K + + DD + L NED + + N G + Sbjct: 301 RGT-AAFYHHLPAASGCKQTSTKRKVEEMEVDDFYDGIKRLYNEDNVSE------NVGSV 353 Query: 135 VGT 137 GT Sbjct: 354 CGT 356 >gi|14165274 golgi-associated microtubule-binding protein HOOK3 [Homo sapiens] Length = 718 Score = 37.4 bits (85), Expect = 0.020 Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 5/131 (3%) Query: 115 LTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQ 174 L +++ D L V P R +E K+LKL ++G+++ L ++ A N R+ Sbjct: 445 LGSQESSDSLAAEIVTPEIREKLIRLQHENKMLKLNQEGSDNEKIALLQSLLDDA-NLRK 503 Query: 175 NGSNDSDRYSDN---EEDSKIELKLEKREPLKGRAKTPVTLKQRRVEH-NQVGEKTEERR 230 N +R + E S++E + + +A+ V LK++ EH ++ E E + Sbjct: 504 NELETENRLVNQRLLEVQSQVEELQKSLQDQGSKAEDSVLLKKKLEEHLEKLHEANNELQ 563 Query: 231 VERDILKEMFP 241 +R I++++ P Sbjct: 564 KKRAIIEDLEP 574 >gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] Length = 352 Score = 35.0 bits (79), Expect = 0.098 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 16/164 (9%) Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL 110 PPLP G R +GS + RSR+ GR + K+ K R++ + Sbjct: 101 PPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR-GRGSEKRKKKSRKDTSRNC 159 Query: 111 DVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAE 170 + + G T E+ K R + S SS+ + SSS+ Sbjct: 160 SAS---------------TSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSS 204 Query: 171 NTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQ 214 ++ + S+ R + K K +KR+ LK + K +Q Sbjct: 205 SSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 248 >gi|169164209 PREDICTED: hypothetical protein [Homo sapiens] Length = 179 Score = 34.7 bits (78), Expect = 0.13 Identities = 18/43 (41%), Positives = 22/43 (51%) Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGR 93 PP A T+S+ PP + E P GSG AAG R +GR Sbjct: 58 PPSHASTSSRSPPPRARRTEPAVPPSCGSGPGAAGALRMGLGR 100 >gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo sapiens] Length = 179 Score = 34.7 bits (78), Expect = 0.13 Identities = 18/43 (41%), Positives = 22/43 (51%) Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGR 93 PP A T+S+ PP + E P GSG AAG R +GR Sbjct: 58 PPSHASTSSRSPPPRARRTEPAVPPSCGSGPGAAGALRMGLGR 100 >gi|188536047 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c1 [Homo sapiens] Length = 1105 Score = 34.7 bits (78), Expect = 0.13 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 8/145 (5%) Query: 161 PLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHN 220 P PT S + S R S EED + +L + +P TPV + V Sbjct: 334 PTPTESRKKSGKKGQASLYGKRRSQKEEDEQEDLTKDMEDP------TPVPNIEEVVLPK 387 Query: 221 QVGEK--TEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFS 278 V K +E V+ + ++ + T T P KG R ++L + + E + Sbjct: 388 NVNLKKDSENTPVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSRSVDLGEDNVTEQTN 447 Query: 279 SKYVPKYVPLADVKSEKTKKGRSIP 303 +P Y D + R++P Sbjct: 448 HIIIPSYASWFDYNCIHVIERRALP 472 Score = 29.3 bits (64), Expect = 5.4 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 6/111 (5%) Query: 127 YGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSD- 185 YG+ I GT EK L E + P AEN +N +++ D+ D Sbjct: 755 YGLESSCIAGTGPDEPEK----LEGAEEEKMEADPDGQQPEKAENKVENETDEGDKAQDG 810 Query: 186 -NEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDI 235 NE++S+ E E E K K K+ + T +++VE +I Sbjct: 811 ENEKNSEKEQDSEVSEDTKSEEKETEENKELTDTCKERESDTGKKKVEHEI 861 >gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] Length = 2454 Score = 34.7 bits (78), Expect = 0.13 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 18/122 (14%) Query: 145 KLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKRE---- 200 K +L E + I +++ +N SN + + EE+ + E + E+ E Sbjct: 1370 KKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDEN 1429 Query: 201 -----PLKGRAKTPVTLKQRRVE---HNQVGEKTE------ERRVERDILKEMFPYEAST 246 P KGR K LK ++ N + E+ E ER ER+ L+E+ E ++ Sbjct: 1430 DDSKSPGKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAEREREREKLREVIEIEDAS 1489 Query: 247 PT 248 PT Sbjct: 1490 PT 1491 >gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] Length = 2492 Score = 34.7 bits (78), Expect = 0.13 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 18/122 (14%) Query: 145 KLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKRE---- 200 K +L E + I +++ +N SN + + EE+ + E + E+ E Sbjct: 1408 KKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDEN 1467 Query: 201 -----PLKGRAKTPVTLKQRRVE---HNQVGEKTE------ERRVERDILKEMFPYEAST 246 P KGR K LK ++ N + E+ E ER ER+ L+E+ E ++ Sbjct: 1468 DDSKSPGKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAEREREREKLREVIEIEDAS 1527 Query: 247 PT 248 PT Sbjct: 1528 PT 1529 >gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] Length = 1012 Score = 34.7 bits (78), Expect = 0.13 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 153 GTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTL 212 G + + ++P S E+ R +G N S + DSK E + + +K A +P L Sbjct: 33 GRKKQPASPDGRTSPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEASSP--L 90 Query: 213 KQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPTGIS 251 K + + +V TEE +R K+ E S P S Sbjct: 91 KSNKRQREKVASDTEE--ADRTSSKKTKTQEISRPNSPS 127 >gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] Length = 1566 Score = 34.7 bits (78), Expect = 0.13 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 153 GTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTL 212 G + + ++P S E+ R +G N S + DSK E + + +K A +P L Sbjct: 587 GRKKQPASPDGRTSPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEASSP--L 644 Query: 213 KQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPTGIS 251 K + + +V TEE +R K+ E S P S Sbjct: 645 KSNKRQREKVASDTEE--ADRTSSKKTKTQEISRPNSPS 681 >gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] Length = 1566 Score = 34.7 bits (78), Expect = 0.13 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 153 GTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTL 212 G + + ++P S E+ R +G N S + DSK E + + +K A +P L Sbjct: 587 GRKKQPASPDGRTSPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEASSP--L 644 Query: 213 KQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPTGIS 251 K + + +V TEE +R K+ E S P S Sbjct: 645 KSNKRQREKVASDTEE--ADRTSSKKTKTQEISRPNSPS 681 >gi|4507963 zinc finger protein 37 homolog [Homo sapiens] Length = 630 Score = 34.7 bits (78), Expect = 0.13 Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 25/160 (15%) Query: 63 PDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLL- 121 PD S E+ P LG G + + + R K+TD Q+D D L+ + + LL Sbjct: 78 PDMISKLEKGEAPWLGKGKRPSQGCPSKIARPKQKETDGKVQKDDDQLENIQKSQNKLLR 137 Query: 122 -------DQLVKYGVNPGPIVGTTRKLY------EKKLLKLREQGTESRSSTPLPTISSS 168 Q K G + G + G L+ +K+LLK G + + LP Sbjct: 138 EVAVKKKTQAKKNGSDCGSL-GKKNNLHKKHVPSKKRLLKFESCGKILKQNLDLP----- 191 Query: 169 AENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKT 208 + N R SD ++ K + KG+ +T Sbjct: 192 -----DHSRNCVKRKSDAAKEHKKSFNHSLSDTRKGKKQT 226 >gi|58530840 desmoplakin isoform I [Homo sapiens] Length = 2871 Score = 34.3 bits (77), Expect = 0.17 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 24/142 (16%) Query: 101 KPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIV----GTTRKLYEKKLLKLREQGTES 156 K RQ +K++L +L +E + + +Y + ++ GT ++ YE +L K+R E Sbjct: 1144 KARQCEKENLGWQKLESEKAIKEK-EYEIERLRVLLQEEGTRKREYENELAKVRNHYNEE 1202 Query: 157 RSS-------------TPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLK 203 S+ T + IS E+ +N N DR S D K E+ L+ Sbjct: 1203 MSNLRNKYETEINITKTTIKEISMQKEDDSKNLRNQLDRLSRENRDLKDEIVRLNDSILQ 1262 Query: 204 GRAKTPVTLKQRRVEHNQVGEK 225 T ++RR E N + +K Sbjct: 1263 ------ATEQRRRAEENALQQK 1278 >gi|34304356 phosphatase and actin regulator 3 isoform 3 [Homo sapiens] Length = 448 Score = 34.3 bits (77), Expect = 0.17 Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 34/206 (16%) Query: 45 LTARNRPPLPAGTNSKGPPDFSSDEEREPTPVL--GSGAAAAGRSRAAVGRKATKKTDKP 102 L ++R G SKG P D T + G A A+ K T K Sbjct: 190 LATKHRQDSFQGRESKGSPKKRLDVRLSRTSSVERGKEREEAWSFDGALENKRTAA--KE 247 Query: 103 RQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLL--KLR----EQGTES 156 +E+K++L + +DLL + +N I GT + +K+LL KLR +Q E Sbjct: 248 SEENKENLIINSELKDDLLLYQDEEALNDSIISGTLPRKCKKELLAVKLRNRPSKQELED 307 Query: 157 RSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKR---EPLKGRAKTPVTLK 213 R+ P T D +R E +IE+KL KR P + LK Sbjct: 308 RNIFPRRT--------------DEER---QEIRQQIEMKLSKRLSQRPAVEELERRNILK 350 Query: 214 QRRVEHNQVGEKTEERRVERDILKEM 239 QR N E+ E R +++ + +++ Sbjct: 351 QR----NDQTEQEERREIKQRLTRKL 372 >gi|34304354 phosphatase and actin regulator 3 isoform 2 [Homo sapiens] Length = 518 Score = 34.3 bits (77), Expect = 0.17 Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 34/206 (16%) Query: 45 LTARNRPPLPAGTNSKGPPDFSSDEEREPTPVL--GSGAAAAGRSRAAVGRKATKKTDKP 102 L ++R G SKG P D T + G A A+ K T K Sbjct: 260 LATKHRQDSFQGRESKGSPKKRLDVRLSRTSSVERGKEREEAWSFDGALENKRTAA--KE 317 Query: 103 RQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLL--KLR----EQGTES 156 +E+K++L + +DLL + +N I GT + +K+LL KLR +Q E Sbjct: 318 SEENKENLIINSELKDDLLLYQDEEALNDSIISGTLPRKCKKELLAVKLRNRPSKQELED 377 Query: 157 RSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKR---EPLKGRAKTPVTLK 213 R+ P T D +R E +IE+KL KR P + LK Sbjct: 378 RNIFPRRT--------------DEER---QEIRQQIEMKLSKRLSQRPAVEELERRNILK 420 Query: 214 QRRVEHNQVGEKTEERRVERDILKEM 239 QR N E+ E R +++ + +++ Sbjct: 421 QR----NDQTEQEERREIKQRLTRKL 442 >gi|18087853 phosphatase and actin regulator 3 isoform 1 [Homo sapiens] Length = 559 Score = 34.3 bits (77), Expect = 0.17 Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 34/206 (16%) Query: 45 LTARNRPPLPAGTNSKGPPDFSSDEEREPTPVL--GSGAAAAGRSRAAVGRKATKKTDKP 102 L ++R G SKG P D T + G A A+ K T K Sbjct: 301 LATKHRQDSFQGRESKGSPKKRLDVRLSRTSSVERGKEREEAWSFDGALENKRTAA--KE 358 Query: 103 RQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLL--KLR----EQGTES 156 +E+K++L + +DLL + +N I GT + +K+LL KLR +Q E Sbjct: 359 SEENKENLIINSELKDDLLLYQDEEALNDSIISGTLPRKCKKELLAVKLRNRPSKQELED 418 Query: 157 RSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKR---EPLKGRAKTPVTLK 213 R+ P T D +R E +IE+KL KR P + LK Sbjct: 419 RNIFPRRT--------------DEER---QEIRQQIEMKLSKRLSQRPAVEELERRNILK 461 Query: 214 QRRVEHNQVGEKTEERRVERDILKEM 239 QR N E+ E R +++ + +++ Sbjct: 462 QR----NDQTEQEERREIKQRLTRKL 483 >gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 [Homo sapiens] Length = 568 Score = 34.3 bits (77), Expect = 0.17 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 9/123 (7%) Query: 118 EDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGS 177 ED +L+K G +P + T+ + S SS+ + SSS+ ++ + S Sbjct: 129 EDFRRKLLKAGGDPNRSIHTSSS-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 181 Query: 178 NDSDRYSDNEEDSKIE--LKLEKREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDI 235 + S S + SK +K K +P K + K+ +HN+ +++ ++ E Sbjct: 182 SSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENKP 241 Query: 236 LKE 238 LKE Sbjct: 242 LKE 244 >gi|87299628 biorientation of chromosomes in cell division 1-like [Homo sapiens] Length = 3051 Score = 34.3 bits (77), Expect = 0.17 Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 15/162 (9%) Query: 94 KATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGT--TRKLYEKKLLKLRE 151 K +K ED+ D N D+LD ++ P T++ + L +L + Sbjct: 2770 KRKRKQHYLSSEDEPD------DNPDVLDSRIETAQRQCPETEPHDTKEENSRDLEELPK 2823 Query: 152 QGTESRSSTPL-----PTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRA 206 +E+ S+T SSS + ND D EED I +K ++ P K Sbjct: 2824 TSSETNSTTSRVMEEKDEYSSSETTGEKPEQNDDDTIKSQEEDQPIIIKRKRGRPRKYPV 2883 Query: 207 KTPVTLKQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPT 248 +T TLK + G T E+ LK M E++ T Sbjct: 2884 ET--TLKMKDDSKTDTGIVTVEQSPSSSKLKVMQTDESNKET 2923 >gi|33354279 hypothetical protein LOC55425 [Homo sapiens] Length = 340 Score = 33.9 bits (76), Expect = 0.22 Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 12/107 (11%) Query: 62 PPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLL 121 PP F ++ P P++G A G ++ +K+ K D P Q++ D + +ED++ Sbjct: 96 PPGFKKQDDSPPRPIIGP-ALPPGFIKST--QKSDKGRDDPGQQETDSSE-----DEDII 147 Query: 122 DQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSS 168 + GP+ +EK+ +++E+ T+ + P + S Sbjct: 148 GPMPA----KGPVNYNVTTEFEKRAQRMKEKLTKGDDDSSKPIVRES 190 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%) Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLG 78 P LP G ++G + DEER+P+PV G Sbjct: 8 PALPPGFKARGTAE---DEERDPSPVAG 32 >gi|192807320 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform F [Homo sapiens] Length = 1613 Score = 33.5 bits (75), Expect = 0.29 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 6/114 (5%) Query: 107 KDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTIS 166 KDD +V LT E+ +++ G V + L EK+ LK E+GT + Sbjct: 1316 KDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKK 1375 Query: 167 SSAENTRQNGSND-----SDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQR 215 SS + R + + S R D +++SK + K R P + + P L ++ Sbjct: 1376 SSRKRKRDSDAGSSTPTTSTRSRDKDDESK-KQKKRGRPPAEKLSPNPPNLTKK 1428 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.311 0.130 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,961,260 Number of Sequences: 37866 Number of extensions: 691844 Number of successful extensions: 3310 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 138 Number of HSP's that attempted gapping in prelim test: 3114 Number of HSP's gapped (non-prelim): 320 length of query: 345 length of database: 18,247,518 effective HSP length: 103 effective length of query: 242 effective length of database: 14,347,320 effective search space: 3472051440 effective search space used: 3472051440 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.