Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RCAN3 Sequence: fasta or formatted (241aa) NCBI GI: 7305009
Description:

Down syndrome critical region gene 1-like 2

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         17           3
 C cysteine            2.1          5           1
 D aspartate           7.1         17           2
 E glutamate          12.0         29           5
 F phenylalanine       5.4         13           1
 G glycine             2.9          7           1
 H histidine           1.7          4           1
 I isoleucine          2.9          7           1
 K lysine              5.8         14           1
 L leucine             8.3         20           2
 M methionine          2.9          7           2
 N asparagine          2.9          7           1
 P proline             7.1         17           2
 Q glutamine           5.8         14           1
 R arginine            4.6         11           2
 S serine              7.5         18           1
 T threonine           5.4         13           1
 V valine              5.8         14           3
 W tryptophan          0.8          2           1
 Y tyrosine            2.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Down syndrome critical region gene 1-like 2 
RCAN2                 0.501   Down syndrome critical region gene 1-like 1 protein...
RCAN1                 0.447   calcipressin 1 isoform a 
RCAN1                 0.439   calcipressin 1 isoform c 
RCAN1                 0.277   calcipressin 1 isoform b 
PELP1                 0.026   proline, glutamic acid and leucine rich protein 1 [...
ZBTB24                0.015   zinc finger and BTB domain containing 24 
NCOA6                 0.015   nuclear receptor coactivator 6 
SFRS16                0.015   splicing factor, arginine/serine-rich 16 
BOD1L                 0.011   biorientation of chromosomes in cell division 1-like...
TSHZ3                 0.011   zinc finger protein 537 
USP38                 0.011   ubiquitin specific peptidase 38 
DMXL1                 0.011   Dmx-like 1 
PKN3                  0.009   protein kinase PKNbeta 
MAP1A                 0.009   microtubule-associated protein 1A 
RFX7                  0.009   regulatory factor X domain containing 2 
C11orf51              0.009   hypothetical protein LOC25906 
CLSTN1                0.009   calsyntenin 1 isoform 1 
CLSTN1                0.009   calsyntenin 1 isoform 2 
CENPB                 0.006   centromere protein B 
IPO7                  0.006   importin 7 
FANCD2                0.006   Fanconi anemia complementation group D2 isoform b [H...
ZBTB7C                0.006   zinc finger and BTB domain containing 7C 
KIAA1715              0.006   Lunapark 
TRIM41                0.006   tripartite motif-containing 41 isoform 2 
TRIM41                0.006   tripartite motif-containing 41 isoform 1 
AGTPBP1               0.006   ATP/GTP binding protein 1 
ME2                   0.006   malic enzyme 2, NAD(+)-dependent, mitochondrial [Homo...
FLJ22184              0.006   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.006   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press