Search of human proteins with 71164894

Search of human proteins with 71164894

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
         (465 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]          935   0.0  
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa...   634   0.0  
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s...   628   e-180
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]          626   e-179
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s...   625   e-179
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa...   611   e-175
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s...   575   e-164
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4...   386   e-107
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ...   386   e-107
gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ...   386   e-107
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2...   386   e-107
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [...   376   e-104
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ...   375   e-104
gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ...   375   e-104
gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo s...   313   2e-85
gi|93277070 RNA binding motif protein 45 [Homo sapiens]                82   1e-15
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]                80   5e-15
gi|51317351 RNA binding motif, single stranded interacting prote...    79   7e-15
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila...    79   1e-14
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...    77   3e-14
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...    77   3e-14
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ...    77   4e-14
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ...    77   4e-14
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ...    77   4e-14
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ...    77   4e-14
gi|38201714 ELAV-like 1 [Homo sapiens]                                 77   4e-14
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...    77   4e-14
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...    77   4e-14
gi|51317355 RNA binding motif, single stranded interacting prote...    75   1e-13
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ...    74   2e-13

>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
          Length = 465

 Score =  935 bits (2417), Expect = 0.0
 Identities = 465/465 (100%), Positives = 465/465 (100%)

Query: 1   MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
           MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS
Sbjct: 1   MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60

Query: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT 120
           ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT
Sbjct: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT 120

Query: 121 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG 180
           IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG
Sbjct: 121 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG 180

Query: 181 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM 240
           LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM
Sbjct: 181 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM 240

Query: 241 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP 300
           AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP
Sbjct: 241 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP 300

Query: 301 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQ 360
           NGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQ
Sbjct: 301 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQ 360

Query: 361 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS 420
           QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS
Sbjct: 361 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS 420

Query: 421 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
           KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
Sbjct: 421 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465


>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 486

 Score =  634 bits (1636), Expect = 0.0
 Identities = 319/479 (66%), Positives = 377/479 (78%), Gaps = 54/479 (11%)

Query: 1   MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
           MK+ DAIKLF+GQIPR+L+EKDLKP+FE+FG+I+ELTV+KD++TG+HKGCAFLTYC R+S
Sbjct: 48  MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERES 107

Query: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRG----------EDRKLFVGMLGKQQTDED 110
           ALKAQSALHEQKTLPGMNRPIQVKPADSESRG          +DRKLFVGML KQQ+++D
Sbjct: 108 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDD 167

Query: 111 VRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVV 170
           VR++FE FG I+ECT+LRGPDG SKGCAFVK+ +HAEAQAAIN LH S+T+PGASSSLVV
Sbjct: 168 VRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVV 227

Query: 171 KFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVA--AHSAYLSP 228
           KFADT+KER +RRMQQ+A Q+GMF+P+A+ FGAY AY QALMQQQAAL+A  A   YL+P
Sbjct: 228 KFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNP 287

Query: 229 MATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQ 288
           MA  AA QMQ MAA+N NGL A P+TP+SG STPP I A  V +IP+ +GVNG++ +P Q
Sbjct: 288 MAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQ 347

Query: 289 PTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYT--AAYPAAYSLVAPAFPQP 346
             GQPA +A++ NG+HPYPAQSP A  DPLQQAYAG+Q Y   AAYPAAY  ++ AFPQP
Sbjct: 348 ANGQPAAEAVFANGIHPYPAQSPTA-ADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQP 406

Query: 347 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV 406
           P ++                    QQQREGP+GCN+FIYHLPQEF D+E++QMF+P    
Sbjct: 407 PPMI-------------------PQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP---- 443

Query: 407 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
                           FGFVSFDNPASAQ AIQAMNGFQIGMKRLKVQLKRPKDANRPY
Sbjct: 444 ----------------FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486


>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
           sapiens]
          Length = 485

 Score =  628 bits (1620), Expect = e-180
 Identities = 318/479 (66%), Positives = 376/479 (78%), Gaps = 55/479 (11%)

Query: 1   MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
           MK+ DAIKLF+GQIPR+L+EKDLKP+FE+FG+I+ELTV+KD++TG+HKGCAFLTYC R+S
Sbjct: 48  MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERES 107

Query: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRG----------EDRKLFVGMLGKQQTDED 110
           ALKAQSALHEQKTLPGMNRPIQVKPADSESRG          +DRKLFVGML KQQ+++D
Sbjct: 108 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDD 167

Query: 111 VRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVV 170
           VR++FE FG I+ECT+LRGPDG SKGCAFVK+ +HAEAQAAIN LH S+T+PGASSSLVV
Sbjct: 168 VRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVV 227

Query: 171 KFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVA--AHSAYLSP 228
           KFADT+KER +RRMQQ+A Q+GMF+P+A+ FGAY AY QA MQQQAAL+A  A   YL+P
Sbjct: 228 KFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQA-MQQQAALMASVAQGGYLNP 286

Query: 229 MATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQ 288
           MA  AA QMQ MAA+N NGL A P+TP+SG STPP I A  V +IP+ +GVNG++ +P Q
Sbjct: 287 MAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQ 346

Query: 289 PTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYT--AAYPAAYSLVAPAFPQP 346
             GQPA +A++ NG+HPYPAQSP A  DPLQQAYAG+Q Y   AAYPAAY  ++ AFPQP
Sbjct: 347 ANGQPAAEAVFANGIHPYPAQSPTA-ADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQP 405

Query: 347 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV 406
           P ++                    QQQREGP+GCN+FIYHLPQEF D+E++QMF+P    
Sbjct: 406 PPMI-------------------PQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP---- 442

Query: 407 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
                           FGFVSFDNPASAQ AIQAMNGFQIGMKRLKVQLKRPKDANRPY
Sbjct: 443 ----------------FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 485


>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
          Length = 481

 Score =  626 bits (1615), Expect = e-179
 Identities = 318/466 (68%), Positives = 367/466 (78%), Gaps = 25/466 (5%)

Query: 1   MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
           MK+ DAIKLFVGQIPR L+E+DLKP+FE+FGRI+ELTV+KD+ TGLHKGCAFLTYCARDS
Sbjct: 40  MKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDS 99

Query: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT 120
           ALKAQSALHEQKTLPGMNRPIQVKPA SE RGEDRKLFVGMLGKQQ +EDVR++F+PFG 
Sbjct: 100 ALKAQSALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGH 159

Query: 121 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG 180
           I+ECTVLR PDGTSKGCAFVKF +  EAQAAI  LH SRT+ GASSSLVVK ADT++ER 
Sbjct: 160 IEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRERA 219

Query: 181 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALV-AAHSAYLSPMATMAAVQMQH 239
           LRRMQQ+A  LG F P  L  GA  AYT A++Q QAAL+ AA    L P+A +AA QMQH
Sbjct: 220 LRRMQQMAGHLGAFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAA-QMQH 278

Query: 240 MAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALY 299
           +AA +   L+A P+ P++  ++PP      +  +PA +GVNG+ P+  Q  GQP  D LY
Sbjct: 279 VAAFS---LVAAPLLPAAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLY 335

Query: 300 PNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQ 359
            NG+ PYPAQSP    DPLQQAYAGM HY AAYP+AY+ V+ AFPQ P+ +         
Sbjct: 336 NNGLSPYPAQSPGV-ADPLQQAYAGMHHYAAAYPSAYAPVSTAFPQQPSAL--------- 385

Query: 360 QQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ 419
                      QQQREGP+GCN+FIYHLPQEF D+E++Q F+PFG V+SAKVFVDRATNQ
Sbjct: 386 ----------PQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ 435

Query: 420 SKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
           SKCFGFVSFDNP SAQ AIQAMNGFQIGMKRLKVQLKRPKDANRPY
Sbjct: 436 SKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 481


>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
           sapiens]
          Length = 484

 Score =  625 bits (1612), Expect = e-179
 Identities = 317/478 (66%), Positives = 374/478 (78%), Gaps = 54/478 (11%)

Query: 1   MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
           MK+ DAIKLF+GQIPR+L+EKDLKP+FE+FG+I+ELTV+KD++TG+HKGCAFLTYC R+S
Sbjct: 48  MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERES 107

Query: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRG---------EDRKLFVGMLGKQQTDEDV 111
           ALKAQSALHEQKTLPGMNRPIQVKPADSESRG           RKLFVGML KQQ+++DV
Sbjct: 108 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDV 167

Query: 112 RKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVK 171
           R++FE FG I+ECT+LRGPDG SKGCAFVK+ +HAEAQAAIN LH S+T+PGASSSLVVK
Sbjct: 168 RRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVK 227

Query: 172 FADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVA--AHSAYLSPM 229
           FADT+KER +RRMQQ+A Q+GMF+P+A+ FGAY AY QA MQQQAAL+A  A   YL+PM
Sbjct: 228 FADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQA-MQQQAALMASVAQGGYLNPM 286

Query: 230 ATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQP 289
           A  AA QMQ MAA+N NGL A P+TP+SG STPP I A  V +IP+ +GVNG++ +P Q 
Sbjct: 287 AAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQA 346

Query: 290 TGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYT--AAYPAAYSLVAPAFPQPP 347
            GQPA +A++ NG+HPYPAQSP A  DPLQQAYAG+Q Y   AAYPAAY  ++ AFPQPP
Sbjct: 347 NGQPAAEAVFANGIHPYPAQSPTA-ADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPP 405

Query: 348 ALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVI 407
            ++                    QQQREGP+GCN+FIYHLPQEF D+E++QMF+P     
Sbjct: 406 PMI-------------------PQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP----- 441

Query: 408 SAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
                          FGFVSFDNPASAQ AIQAMNGFQIGMKRLKVQLKRPKDANRPY
Sbjct: 442 ---------------FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 484


>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 485

 Score =  611 bits (1576), Expect = e-175
 Identities = 309/468 (66%), Positives = 368/468 (78%), Gaps = 24/468 (5%)

Query: 1   MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
           MK+ DAIKLFVGQIPRHL+EKDLKP+FEQFGRI+ELTV+KD YTG+HKGCAFLTYCARDS
Sbjct: 39  MKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDS 98

Query: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRG-EDRKLFVGMLGKQQTDEDVRKMFEPFG 119
           A+KAQ+ALHEQKTLPGM RPIQVKPADSESRG  DRKLFVGML KQQ++EDV ++F+PFG
Sbjct: 99  AIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG 158

Query: 120 TIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
            IDECTVLRGPDG+SKGCAFVKF +H EAQAAI+ LH S+T+PGASSSLVVKFADT+KER
Sbjct: 159 VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKER 218

Query: 180 GLRRMQQVATQLGMFSP-IALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQ 238
            LRRMQQ+  QLG+ +P + L F  YSAY QALMQQQ  +++   +YLSP    +   +Q
Sbjct: 219 TLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQ 278

Query: 239 HMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDAL 298
            + A++ NGL ATPI P+SG  +PP +  T V  + A +  NG++ V   P G PA + +
Sbjct: 279 QIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETV 337

Query: 299 YPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYP-AAYSLVAPAFPQPPALVAQQPPPP 357
           Y NG+ PYPAQSP    + L  A++G+Q YTA YP AA + +A + PQPP L+       
Sbjct: 338 YANGLVPYPAQSPTV-AETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLL------- 389

Query: 358 PQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRAT 417
                       QQQQREGP+GCN+FIYHLPQEF D+E+ QMF+PFG++IS+KVF+DRAT
Sbjct: 390 ------------QQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRAT 437

Query: 418 NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
           NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD   PY
Sbjct: 438 NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY 485



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 353 QPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVF 412
           QP P P      +    Q    +  D   +F+  +P+   + ++  +F  FG +    V 
Sbjct: 18  QPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVL 77

Query: 413 VDRATNQSKCFGFVSF---DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 461
            D  T   K   F+++   D+   AQ A+        GM R  +Q+K P D+
Sbjct: 78  KDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLP-GMAR-PIQVK-PADS 126


>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
           sapiens]
          Length = 448

 Score =  575 bits (1482), Expect = e-164
 Identities = 298/469 (63%), Positives = 349/469 (74%), Gaps = 72/469 (15%)

Query: 1   MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
           MK+ DAIKLF+GQIPR+L+EKDLKP+FE+FG+I+ELTV+KD++TG+HKGCAFLTYC R+S
Sbjct: 48  MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERES 107

Query: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT 120
           ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGML KQQ+++DVR++FE FG 
Sbjct: 108 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGN 167

Query: 121 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG 180
           I+ECT+LRGPDG SKGCAFVK+ +HAEAQAAIN LH S+T+PGASSSLVVKFADT+KER 
Sbjct: 168 IEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT 227

Query: 181 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVA--AHSAYLSPMATMAAVQMQ 238
           +RRMQQ+A Q+GMF+P+A+ FGAY AY QALMQQQAAL+A  A   YL+PMA  AA QMQ
Sbjct: 228 MRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQ 287

Query: 239 HMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDAL 298
            MAA+N NGL A P+TP+SG STPP I A  V +IP+ +GVNG++ +P Q  GQPA +A+
Sbjct: 288 QMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAV 347

Query: 299 YPNGVHPYPAQSPAAPVDPLQQAYAGMQHYT--AAYPAAYSLVAPAFPQPPALVAQQPPP 356
           + NG+HPYPAQSP A  DPLQQAYAG+Q Y   AAYPAAY  ++ AFPQPP ++      
Sbjct: 348 FANGIHPYPAQSPTA-ADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMI------ 400

Query: 357 PPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 416
                         QQQREG                       FV F             
Sbjct: 401 -------------PQQQREG-----------------------FVSF------------- 411

Query: 417 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
                       DNPASAQ AIQAMNGFQIGMKRLKVQLKRPKDANRPY
Sbjct: 412 ------------DNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 448


>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
           [Homo sapiens]
          Length = 488

 Score =  386 bits (992), Expect = e-107
 Identities = 231/511 (45%), Positives = 297/511 (58%), Gaps = 82/511 (16%)

Query: 3   EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTG--LHKGCAFLTYCARDS 60
           +PDAIK+FVGQIPR   EK+LK +FE +G ++++ V++D+       KGC F+T+  R +
Sbjct: 12  DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 71

Query: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGMLGKQQTDEDVRKMFEPF 118
           AL+AQ+ALH  KTLPGM+ PIQ+KPADSE     EDRKLF+GM+ K+  + D+R MF PF
Sbjct: 72  ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 131

Query: 119 GTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
           G I+EC +LRGPDG S+GCAFV F T A AQ AI  +H S+T+ G SS +VVKFADT+K+
Sbjct: 132 GQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191

Query: 179 RGLRRMQQVATQ---------------LGMFSPIAL----------QFGAYSAYTQALMQ 213
           +  RR+QQ   Q               LG  +P  L            GA+S      +Q
Sbjct: 192 KEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSG-----IQ 246

Query: 214 QQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAI 273
           Q A + A     L+ +A  AA       + NAN L  T  + + G  T P  A+TP S  
Sbjct: 247 QMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTT--SSALGALTSPVAASTPNSTA 304

Query: 274 PAAL-----------------GVNGYSPVPTQPTGQPAPDA-LYPNGVHPYPAQSPAAPV 315
            AA+                 G+N  + +        A +  L   G+        A  +
Sbjct: 305 GAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNGGLGATGL----TNGTAGTM 360

Query: 316 DPLQQAYAGMQHYTAA-YPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQR 374
           D L QAY+G+Q Y AA  P  YS                       Q   QQQ     Q+
Sbjct: 361 DALTQAYSGIQQYAAAALPTLYS-----------------------QSLLQQQSAAGSQK 397

Query: 375 EGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 434
           EGP+G N+FIYHLPQEF D +ILQMF+PFG+VISAKVF+D+ TN SKCFGFVS+DNP SA
Sbjct: 398 EGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 457

Query: 435 QAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
           QAAIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 458 QAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 488


>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
           [Homo sapiens]
          Length = 508

 Score =  386 bits (992), Expect = e-107
 Identities = 230/503 (45%), Positives = 293/503 (58%), Gaps = 70/503 (13%)

Query: 3   EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTG--LHKGCAFLTYCARDS 60
           +PDAIK+FVGQIPR   EK+LK +FE +G ++++ V++D+       KGC F+T+  R +
Sbjct: 36  DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 95

Query: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGMLGKQQTDEDVRKMFEPF 118
           AL+AQ+ALH  KTLPGM+ PIQ+KPADSE     EDRKLF+GM+ K+  + D+R MF PF
Sbjct: 96  ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 155

Query: 119 GTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
           G I+EC +LRGPDG S+GCAFV F T A AQ AI  +H S+T+ G SS +VVKFADT+K+
Sbjct: 156 GQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215

Query: 179 RGLRRMQQVATQ---------------LGMFSPIAL----------QFGAYSAYTQALMQ 213
           +  RR+QQ   Q               LG  +P  L            GA+S      +Q
Sbjct: 216 KEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSG-----IQ 270

Query: 214 QQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAI 273
           Q A + A     L+ +A  AA       + NAN L  T  + + G  T P  A+TP S  
Sbjct: 271 QMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTT--SSALGALTSPVAASTPNSTA 328

Query: 274 PAAL----------GVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYA 323
            AA+          G+ G +             AL             A  +D L QAY+
Sbjct: 329 GAAMNSLTSLGTLQGLAGATVGLNNINALAGMAALNGGLGATGLTNGTAGTMDALTQAYS 388

Query: 324 GMQHYTAA-YPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNI 382
           G+Q Y AA  P  YS                       Q   QQQ     Q+EGP+G N+
Sbjct: 389 GIQQYAAAALPTLYS-----------------------QSLLQQQSAAGSQKEGPEGANL 425

Query: 383 FIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN 442
           FIYHLPQEF D +ILQMF+PFG+VISAKVF+D+ TN SKCFGFVS+DNP SAQAAIQAMN
Sbjct: 426 FIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMN 485

Query: 443 GFQIGMKRLKVQLKRPKDANRPY 465
           GFQIGMKRLKVQLKR K+ ++PY
Sbjct: 486 GFQIGMKRLKVQLKRSKNDSKPY 508


>gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1
           [Homo sapiens]
          Length = 490

 Score =  386 bits (991), Expect = e-107
 Identities = 233/513 (45%), Positives = 299/513 (58%), Gaps = 84/513 (16%)

Query: 3   EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTG--LHKGCAFLTYCARDS 60
           +PDAIK+FVGQIPR   EK+LK +FE +G ++++ V++D+       KGC F+T+  R +
Sbjct: 12  DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 71

Query: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGMLGKQQTDEDVRKMFEPF 118
           AL+AQ+ALH  KTLPGM+ PIQ+KPADSE     EDRKLF+GM+ K+  + D+R MF PF
Sbjct: 72  ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 131

Query: 119 GTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
           G I+EC +LRGPDG S+GCAFV F T A AQ AI  +H S+T+ G SS +VVKFADT+K+
Sbjct: 132 GQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191

Query: 179 RGLRRMQQVATQ---------------LGMFSPIAL----------QFGAYSAYTQALMQ 213
           +  RR+QQ   Q               LG  +P  L            GA+S      +Q
Sbjct: 192 KEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSG-----IQ 246

Query: 214 QQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAI 273
           Q A + A     L+ +A  AA       + NAN L  T  + + G  T P  A+TP S  
Sbjct: 247 QMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTT--SSALGALTSPVAASTPNSTA 304

Query: 274 PAAL-----------------GVNGYSP--VPTQPTGQPAPDA-LYPNGVHPYPAQSPAA 313
            AA+                 G+N  +   V    +G  A +  L   G+        A 
Sbjct: 305 GAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGL----TNGTAG 360

Query: 314 PVDPLQQAYAGMQHYTAA-YPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQ 372
            +D L QAY+G+Q Y AA  P  YS                       Q   QQQ     
Sbjct: 361 TMDALTQAYSGIQQYAAAALPTLYS-----------------------QSLLQQQSAAGS 397

Query: 373 QREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPA 432
           Q+EGP+G N+FIYHLPQEF D +ILQMF+PFG+VISAKVF+D+ TN SKCFGFVS+DNP 
Sbjct: 398 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 457

Query: 433 SAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
           SAQAAIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 458 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 490


>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
           [Homo sapiens]
          Length = 521

 Score =  386 bits (991), Expect = e-107
 Identities = 233/513 (45%), Positives = 299/513 (58%), Gaps = 84/513 (16%)

Query: 3   EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTG--LHKGCAFLTYCARDS 60
           +PDAIK+FVGQIPR   EK+LK +FE +G ++++ V++D+       KGC F+T+  R +
Sbjct: 43  DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 102

Query: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGMLGKQQTDEDVRKMFEPF 118
           AL+AQ+ALH  KTLPGM+ PIQ+KPADSE     EDRKLF+GM+ K+  + D+R MF PF
Sbjct: 103 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 162

Query: 119 GTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
           G I+EC +LRGPDG S+GCAFV F T A AQ AI  +H S+T+ G SS +VVKFADT+K+
Sbjct: 163 GQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 222

Query: 179 RGLRRMQQVATQ---------------LGMFSPIAL----------QFGAYSAYTQALMQ 213
           +  RR+QQ   Q               LG  +P  L            GA+S      +Q
Sbjct: 223 KEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSG-----IQ 277

Query: 214 QQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAI 273
           Q A + A     L+ +A  AA       + NAN L  T  + + G  T P  A+TP S  
Sbjct: 278 QMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTT--SSALGALTSPVAASTPNSTA 335

Query: 274 PAAL-----------------GVNGYSP--VPTQPTGQPAPDA-LYPNGVHPYPAQSPAA 313
            AA+                 G+N  +   V    +G  A +  L   G+        A 
Sbjct: 336 GAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGL----TNGTAG 391

Query: 314 PVDPLQQAYAGMQHYTAA-YPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQ 372
            +D L QAY+G+Q Y AA  P  YS                       Q   QQQ     
Sbjct: 392 TMDALTQAYSGIQQYAAAALPTLYS-----------------------QSLLQQQSAAGS 428

Query: 373 QREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPA 432
           Q+EGP+G N+FIYHLPQEF D +ILQMF+PFG+VISAKVF+D+ TN SKCFGFVS+DNP 
Sbjct: 429 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 488

Query: 433 SAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
           SAQAAIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 489 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 521


>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
           [Homo sapiens]
          Length = 482

 Score =  376 bits (965), Expect = e-104
 Identities = 218/490 (44%), Positives = 298/490 (60%), Gaps = 50/490 (10%)

Query: 5   DAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTG--LHKGCAFLTYCARDSAL 62
           DAIK+FVGQ+PR   EKDL+ +FEQ+G ++E+ V++D+       KGC F+T+  R +AL
Sbjct: 14  DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAAL 73

Query: 63  KAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGMLGKQQTDEDVRKMFEPFGT 120
           +AQ+ALH  K LPGM+ PIQ+KPADSE     EDRKLF+GM+ K+ T+ D+R MF  FG 
Sbjct: 74  EAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133

Query: 121 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG 180
           I+EC +LRGPDG S+GCAFV F T A AQ AI  +H ++T+ G SS +VVKFADT+K++ 
Sbjct: 134 IEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKE 193

Query: 181 LRRM-QQVATQLGMFSPIALQFGAYSAYTQ-----ALMQQQAALVAAHS-AYLSPMATMA 233
            +RM QQ+  Q+   S  ++        T      AL+QQ A+    ++ + L PM  + 
Sbjct: 194 QKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLN 253

Query: 234 AVQMQHMAAINANGLIA--TPI-TPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPT 290
           A+Q+Q++AA+ A    A  TP  T +  TS+ P    T   + P++   N  +P+ +   
Sbjct: 254 AMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGA 313

Query: 291 GQPAPDALYPNGVHPYPAQSP--------------AAPVDPLQQAYAGMQHYTAA-YPAA 335
            Q    A     V      +                + ++ L QAY+G+Q Y AA  P  
Sbjct: 314 LQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTL 373

Query: 336 YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSE 395
           Y+                     Q    QQ       Q+EGP+G N+FIYHLPQEF D +
Sbjct: 374 YN---------------------QNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQD 412

Query: 396 ILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 455
           +LQMF+PFG+V+SAKVF+D+ TN SKCFGFVS+DNP SAQAAIQ+MNGFQIGMKRLKVQL
Sbjct: 413 LLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 472

Query: 456 KRPKDANRPY 465
           KR K+ ++PY
Sbjct: 473 KRSKNDSKPY 482



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 4   PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
           P+   LF+  +P+   ++DL  +F  FG +    V  DK T L K   F++Y   D+ + 
Sbjct: 394 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY---DNPVS 450

Query: 64  AQSALHEQKTLP-GMNR-PIQVKPADSESR 91
           AQ+A+        GM R  +Q+K + ++S+
Sbjct: 451 AQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 480


>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
           [Homo sapiens]
          Length = 483

 Score =  375 bits (964), Expect = e-104
 Identities = 216/492 (43%), Positives = 300/492 (60%), Gaps = 53/492 (10%)

Query: 5   DAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTG--LHKGCAFLTYCARDSAL 62
           DAIK+FVGQ+PR   EKDL+ +FEQ+G ++E+ V++D+       KGC F+T+  R +AL
Sbjct: 14  DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAAL 73

Query: 63  KAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGMLGKQQTDEDVRKMFEPFGT 120
           +AQ+ALH  K LPGM+ PIQ+KPADSE     EDRKLF+GM+ K+ T+ D+R MF  FG 
Sbjct: 74  EAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133

Query: 121 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG 180
           I+EC +LRGPDG S+GCAFV F T A AQ AI  +H ++T+ G SS +VVKFADT+K++ 
Sbjct: 134 IEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKE 193

Query: 181 LRRM-QQVATQLGMFSPIALQFGAYSAYTQ-----ALMQQQAALVAAHS-AYLSPMATMA 233
            +RM QQ+  Q+   S  ++        T      AL+QQ A+    ++ + L PM  + 
Sbjct: 194 QKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLN 253

Query: 234 AVQMQHMAAINANGLIATPITPS-----SGTSTPPAIAATPVSAIPAALGVNGYSPVPTQ 288
           A+Q+Q++AA+ A    A   TPS     + +S+P ++  +   + P++   N  +P+ + 
Sbjct: 254 AMQLQNLAALAA-AASAAQNTPSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASL 312

Query: 289 PTGQPAPDALYPNGVHPYPAQSP--------------AAPVDPLQQAYAGMQHYTAA-YP 333
              Q    A     V      +                + ++ L QAY+G+Q Y AA  P
Sbjct: 313 GALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALP 372

Query: 334 AAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTD 393
             Y+                     Q    QQ       Q+EGP+G N+FIYHLPQEF D
Sbjct: 373 TLYN---------------------QNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGD 411

Query: 394 SEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 453
            ++LQMF+PFG+V+SAKVF+D+ TN SKCFGFVS+DNP SAQAAIQ+MNGFQIGMKRLKV
Sbjct: 412 QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 471

Query: 454 QLKRPKDANRPY 465
           QLKR K+ ++PY
Sbjct: 472 QLKRSKNDSKPY 483



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 4   PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
           P+   LF+  +P+   ++DL  +F  FG +    V  DK T L K   F++Y   D+ + 
Sbjct: 395 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY---DNPVS 451

Query: 64  AQSALHEQKTLP-GMNR-PIQVKPADSESR 91
           AQ+A+        GM R  +Q+K + ++S+
Sbjct: 452 AQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 481


>gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3
           [Homo sapiens]
          Length = 486

 Score =  375 bits (962), Expect = e-104
 Identities = 218/494 (44%), Positives = 298/494 (60%), Gaps = 54/494 (10%)

Query: 5   DAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTG--LHKGCAFLTYCARDSAL 62
           DAIK+FVGQ+PR   EKDL+ +FEQ+G ++E+ V++D+       KGC F+T+  R +AL
Sbjct: 14  DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAAL 73

Query: 63  KAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGMLGKQQTDEDVRKMFEPFGT 120
           +AQ+ALH  K LPGM+ PIQ+KPADSE     EDRKLF+GM+ K+ T+ D+R MF  FG 
Sbjct: 74  EAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 133

Query: 121 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG 180
           I+EC +LRGPDG S+GCAFV F T A AQ AI  +H ++T+ G SS +VVKFADT+K++ 
Sbjct: 134 IEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKE 193

Query: 181 LRRM-QQVATQLGMFSPIALQFGA---------YSAYTQALMQQQAALVAAHS-AYLSPM 229
            +RM QQ+  Q+   S  ++             Y A    L+QQ A+    ++ + L PM
Sbjct: 194 QKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPM 253

Query: 230 ATMAAVQMQHMAAINANGLIA--TPI-TPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP 286
             + A+Q+Q++AA+ A    A  TP  T +  TS+ P    T   + P++   N  +P+ 
Sbjct: 254 GGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIA 313

Query: 287 TQPTGQPAPDALYPNGVHPYPAQSP--------------AAPVDPLQQAYAGMQHYTAA- 331
           +    Q    A     V      +                + ++ L QAY+G+Q Y AA 
Sbjct: 314 SLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAA 373

Query: 332 YPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEF 391
            P  Y+                     Q    QQ       Q+EGP+G N+FIYHLPQEF
Sbjct: 374 LPTLYN---------------------QNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEF 412

Query: 392 TDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 451
            D ++LQMF+PFG+V+SAKVF+D+ TN SKCFGFVS+DNP SAQAAIQ+MNGFQIGMKRL
Sbjct: 413 GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 472

Query: 452 KVQLKRPKDANRPY 465
           KVQLKR K+ ++PY
Sbjct: 473 KVQLKRSKNDSKPY 486



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 4   PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
           P+   LF+  +P+   ++DL  +F  FG +    V  DK T L K   F++Y   D+ + 
Sbjct: 398 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY---DNPVS 454

Query: 64  AQSALHEQKTLP-GMNR-PIQVKPADSESR 91
           AQ+A+        GM R  +Q+K + ++S+
Sbjct: 455 AQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 484


>gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo
           sapiens]
          Length = 320

 Score =  313 bits (802), Expect = 2e-85
 Identities = 163/280 (58%), Positives = 205/280 (73%), Gaps = 5/280 (1%)

Query: 77  MNRPIQVKPADSESRG-EDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 135
           M RPIQVKPADSESRG  DRKLFVGML KQQ++EDV ++F+PFG IDECTVLRGPDG+SK
Sbjct: 1   MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60

Query: 136 GCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFS 195
           GCAFVKF +H EAQAAI+ LH S+T+PGASSSLVVKFADT+KER LRRMQQ+  QLG+ +
Sbjct: 61  GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120

Query: 196 P-IALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPIT 254
           P + L F  YSAY QALMQQQ  +++   +YLSP    +   +Q + A++ NGL ATPI 
Sbjct: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 180

Query: 255 PSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAP 314
           P+SG  +PP +  T V  + A +  NG++ V   P G PA + +Y NG+ PYPAQSP   
Sbjct: 181 PASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTV- 238

Query: 315 VDPLQQAYAGMQHYTAAYP-AAYSLVAPAFPQPPALVAQQ 353
            + L  A++G+Q YTA YP AA + +A + PQPP L+ QQ
Sbjct: 239 AETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQ 278



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 365 QQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFG 424
           Q +    + R G D   +F+  L ++ ++ ++L++F PFG VI     +      SK   
Sbjct: 6   QVKPADSESRGGRDR-KLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCA 63

Query: 425 FVSFDNPASAQAAIQAMNGFQ 445
           FV F +   AQAAI A++G Q
Sbjct: 64  FVKFSSHTEAQAAIHALHGSQ 84


>gi|93277070 RNA binding motif protein 45 [Homo sapiens]
          Length = 474

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 11/167 (6%)

Query: 1   MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
           + EP   ++F+  I ++  E  L+  F  FG I ++ V++DK+T   KG AF+ +     
Sbjct: 20  LDEPPNSRIFL-VISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78

Query: 61  ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDR--------KLFVGMLGKQQTDEDVR 112
           A +A   +H Q   P   +PI+V  A S S G  R        ++FV M+ K  T+ED+R
Sbjct: 79  ACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLR 137

Query: 113 KMFEPFGTIDECTVLRGP-DGTSKGCAFVKFQTHAEAQAAINTLHSS 158
           + F+ +G I+ C++++    G SKG  +V++   ++A  AI     S
Sbjct: 138 EKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRS 184



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 87  DSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGT-SKGCAFVKFQTH 145
           DS     + ++F+ ++ K   +  +R+ F PFG I +  V+R      SKG AFVKF   
Sbjct: 18  DSLDEPPNSRIFL-VISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARS 76

Query: 146 AEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQ 185
           ++A  A+  +H     P  +  + V  A +      R ++
Sbjct: 77  SQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVE 116



 Score = 35.8 bits (81), Expect = 0.085
 Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 364 QQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCF 423
           Q +     +  E  +   IF+  +P+ +T+ ++ + F  +G +    +  ++ T +SK  
Sbjct: 105 QSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGL 163

Query: 424 GFVSFDNPASAQAAIQ 439
           G+V +  P+ A  AI+
Sbjct: 164 GYVRYLKPSQAAQAIE 179



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 381 NIFIYHLPQEFTDSEIL-QMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQ 439
           N  I+ +  ++T   +L + F PFG +    V  D+ T +SK   FV F   + A  A++
Sbjct: 25  NSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAME 84

Query: 440 AMNGFQIG 447
            M+G  +G
Sbjct: 85  EMHGQCLG 92


>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
          Length = 424

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 85/359 (23%), Positives = 139/359 (38%), Gaps = 44/359 (12%)

Query: 9   LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
           ++VG +   + E  L  +F Q G +    + KD+ TG H+G  F+ + + +    A  A+
Sbjct: 15  VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED---ADYAI 71

Query: 69  HEQKTLPGMNRPIQVKPADSESRGED--RKLFVGMLGKQQTDEDVRKMFEPFGTIDEC-T 125
                +    +PI+V  A + ++  D    +F+G L  +  ++ +   F  FG I +   
Sbjct: 72  KIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131

Query: 126 VLRGPD-GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRM 184
           ++R PD G SKG AF+ F +   + AAI  ++        +  + V +A  +  +G R  
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGERHG 188

Query: 185 QQVATQLGMFSPIALQFGAYSAYTQALMQQQA--ALVAAHSAYLSPMATMAAVQMQHMAA 242
                 L   +P++     +  +  A     A   +V++  + L P              
Sbjct: 189 SAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP-------------- 234

Query: 243 INANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQP---TGQPAPDALY 299
                    P  P  G+  PP     P  A+P   G+    P P  P    G   P A  
Sbjct: 235 ---------PGMPPPGSFPPP---VPPPGALPP--GIPPAMPPPPMPPGAAGHGPPSAGT 280

Query: 300 PNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPP 358
           P   HP    S   P  P    + GM     A+   + L  P    PP    Q PP PP
Sbjct: 281 PGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHP-HAGPPGSGGQPPPRPP 338



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 379 GCNIFIYHLPQEFTDSEILQMFVPFGHVISA-KVFVDRATNQSKCFGFVSFDNPASAQAA 437
           G NIFI +L  E  +  +   F  FG ++   K+  D  T  SK + F++F +  ++ AA
Sbjct: 99  GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158

Query: 438 IQAMNGFQIGMKRLKVQLKRPKDA 461
           I+AMNG  +  + + V     KD+
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKDS 182



 Score = 37.7 bits (86), Expect = 0.022
 Identities = 19/72 (26%), Positives = 41/72 (56%)

Query: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
           +++  L ++ ++  + ++F+  G V++  +  DR T Q + +GFV F +   A  AI+ M
Sbjct: 15  VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query: 442 NGFQIGMKRLKV 453
           N  ++  K ++V
Sbjct: 75  NMIKLYGKPIRV 86



 Score = 29.6 bits (65), Expect = 6.1
 Identities = 33/133 (24%), Positives = 44/133 (33%), Gaps = 20/133 (15%)

Query: 228 PMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPT 287
           P   M+ +Q+ H          A P  P SG   PP          P  +G+    P   
Sbjct: 302 PHPGMSQMQLAHHGPHGLGHPHAGP--PGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFG 359

Query: 288 QPTGQPAPDALYPNGVH-PYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP 346
            P G P P  + P+G+  P P   P     P +    G Q                 P P
Sbjct: 360 SPMGHPGP--MPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRG---------------PLP 402

Query: 347 PALVAQQPPPPPQ 359
           P     +PP PP+
Sbjct: 403 PPRPTPRPPVPPR 415


>gi|51317351 RNA binding motif, single stranded interacting protein
           3 isoform 2 [Homo sapiens]
          Length = 420

 Score = 79.3 bits (194), Expect = 7e-15
 Identities = 97/388 (25%), Positives = 152/388 (39%), Gaps = 57/388 (14%)

Query: 9   LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
           L++  +P    ++DL  + + +G+I     I DK T   KG  F+ +   DS   AQ A+
Sbjct: 63  LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF---DSPAAAQKAV 119

Query: 69  HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLR 128
              K        +Q + A  + + +   L++  L     ++++  M +PFG +    +LR
Sbjct: 120 ASLKA-----NGVQAQMAKQQEQ-DPTNLYISNLPISMDEQELENMLKPFGHVISTRILR 173

Query: 129 GPDGTSKGCAFVKFQTHAEAQAAI-----NTLHSSRTLPGASSSLVVKFADTEKERGLRR 183
             +G S+G  F + ++  + +  I       L +   +P  S  L+ KFAD  +++  R+
Sbjct: 174 DANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK--RQ 231

Query: 184 MQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAI 243
            Q   TQ G   P   + G    Y      Q       +  Y SP             +I
Sbjct: 232 NQSKYTQNGRPWPREGEAGMALTYDPTAAIQ-------NGFYSSPY------------SI 272

Query: 244 NANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQP-TGQPAPDALYPNG 302
             N +I         TS  P IAA+PVS       V   S +P  P   QP    + P  
Sbjct: 273 ATNRMIPQ-------TSITPFIAASPVSTYQ----VQSTSWMPHPPYVMQPTGAVITPTM 321

Query: 303 VHPYPAQSPAAPVDPLQQAYAGMQ------HYTAAYPAAYSLVAPAFPQPPALVAQQ--- 353
            HP   Q PA  + PL Q    +       + TAA P   + +    P PP  V+ +   
Sbjct: 322 DHPMSMQ-PANMMGPLTQQMNHLSLGTTGTYMTAAAPMQGTYIPQYTPVPPTAVSIEGVV 380

Query: 354 PPPPPQQQQQQQQQQQQQQQREGPDGCN 381
               PQ      Q    QQQ+   D  N
Sbjct: 381 ADTSPQTVAPSSQDTSGQQQQIAVDTSN 408



 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 10/137 (7%)

Query: 320 QAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDG 379
           Q Y    +Y   Y       APA P P A       PP                 E    
Sbjct: 9   QMYPQYTYYYPHYLQTKQSYAPA-PHPMA-------PPSPSTNSSSNNSSNNSSGEQLSK 60

Query: 380 CNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQ 439
            N++I  LP   TD +++++  P+G ++S K  +D+ TNQ K +GFV FD+PA+AQ A+ 
Sbjct: 61  TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120

Query: 440 AM--NGFQIGMKRLKVQ 454
           ++  NG Q  M + + Q
Sbjct: 121 SLKANGVQAQMAKQQEQ 137



 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 364 QQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCF 423
           Q Q  +QQ+Q    D  N++I +LP    + E+  M  PFGHVIS ++  D A   S+  
Sbjct: 128 QAQMAKQQEQ----DPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGV 182

Query: 424 GFVSFDNPASAQAAIQAMNG 443
           GF   ++    +  IQ  NG
Sbjct: 183 GFARMESTEKCEVVIQHFNG 202


>gi|115511032 ELAV (embryonic lethal, abnormal vision,
           Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
          Length = 359

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 4/178 (2%)

Query: 3   EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSAL 62
           E     L V  +P+++ +++LK +F   G I    +++DK TG   G  F+ Y     A 
Sbjct: 35  EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94

Query: 63  KAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTID 122
           KA + L+  +      +    +P+ +  R  D  L+V  L K  T +++ ++F  +G I 
Sbjct: 95  KAINTLNGLRLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMTQKELEQLFSQYGRII 152

Query: 123 ECTVLRGP-DGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
              +L     G S+G  F++F    EA+ AI  L+  +  PGA+  + VKFA+   ++
Sbjct: 153 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKP-PGATEPITVKFANNPSQK 209



 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 29/82 (35%), Positives = 47/82 (57%)

Query: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
           N+ + +LPQ  T  E+  +F   G + S K+  D+ T QS  +GFV++ +P  A+ AI  
Sbjct: 40  NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99

Query: 441 MNGFQIGMKRLKVQLKRPKDAN 462
           +NG ++  K +KV   RP  A+
Sbjct: 100 LNGLRLQTKTIKVSYARPSSAS 121



 Score = 62.8 bits (151), Expect = 6e-10
 Identities = 34/81 (41%), Positives = 49/81 (60%)

Query: 379 GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAI 438
           G  IF+Y+L  +  +S + QMF PFG V + KV  D  TN+ K FGFV+  N   A  AI
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334

Query: 439 QAMNGFQIGMKRLKVQLKRPK 459
            ++NG+++G + L+V  K  K
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNK 355



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 22/63 (34%), Positives = 40/63 (63%)

Query: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
           N+++  LP+  T  E+ Q+F  +G +I++++ VD+ T  S+  GF+ FD    A+ AI+ 
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185

Query: 441 MNG 443
           +NG
Sbjct: 186 LNG 188



 Score = 30.8 bits (68), Expect = 2.7
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 9   LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
           +FV  +    +E  L  +F  FG +  + VI+D  T   KG  F+T    D A  A ++L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 69  H 69
           +
Sbjct: 338 N 338



 Score = 30.0 bits (66), Expect = 4.7
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 97  LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PDGTSKGCAFVKFQTHAEAQAAINTL 155
           +FV  L     +  + +MF PFG +    V+R       KG  FV    + EA  AI +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 156 HSSR 159
           +  R
Sbjct: 338 NGYR 341


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 51/175 (29%), Positives = 95/175 (54%), Gaps = 13/175 (7%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
           ++FVG+IPR L E +L P+FE+ G I++L ++ D  +G ++G AF+T+C +++A +A   
Sbjct: 65  EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124

Query: 68  LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPF--GTIDECT 125
               +  PG +  + +  A++       +LFVG + K +T E++ + F     G +D   
Sbjct: 125 CDSYEIRPGKHLGVCISVANN-------RLFVGSIPKNKTKENILEEFSKVTEGLVD-VI 176

Query: 126 VLRGPDGTSK--GCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
           +   PD   K  G  F++++ H  A  A   L S + +    + + V++AD  +E
Sbjct: 177 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEE 230



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 21/191 (10%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKY-----TGLHKGCAFLTYCARDSAL 62
           +LFVG IP++   K  + I E+F ++ E  V    Y        ++G  FL Y    SA 
Sbjct: 146 RLFVGSIPKN---KTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 202

Query: 63  KAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEP 117
           +A+  L   K     N         V+  D E   + + LFV  L    T+E + K F  
Sbjct: 203 QARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 262

Query: 118 FGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEK 177
           FG ++    L       K  AFV F+    A  A++ + + + + G    +V+     +K
Sbjct: 263 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEM-NGKEIEGEEIEIVLAKPPDKK 314

Query: 178 ERGLRRMQQVA 188
            +  +  +Q +
Sbjct: 315 RKERQAARQAS 325



 Score = 35.0 bits (79), Expect = 0.14
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 92  GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP-DGTSKGCAFVKFQTHAEAQA 150
           G   ++FVG + +   ++++  +FE  G I +  ++  P  G ++G AF+ F     AQ 
Sbjct: 61  GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120

Query: 151 AINTLHSSRTLPGASSSLVVKFAD 174
           A+    S    PG    + +  A+
Sbjct: 121 AVKLCDSYEIRPGKHLGVCISVAN 144



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
           +F+ +L    T+  + + F  FG +   K   D        + FV F++  +A  A+  M
Sbjct: 242 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 293

Query: 442 NGFQIGMKRLKVQLKRPKDANR 463
           NG +I  + +++ L +P D  R
Sbjct: 294 NGKEIEGEEIEIVLAKPPDKKR 315


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 51/175 (29%), Positives = 95/175 (54%), Gaps = 13/175 (7%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
           ++FVG+IPR L E +L P+FE+ G I++L ++ D  +G ++G AF+T+C +++A +A   
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225

Query: 68  LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPF--GTIDECT 125
               +  PG +  + +  A++       +LFVG + K +T E++ + F     G +D   
Sbjct: 226 CDSYEIRPGKHLGVCISVANN-------RLFVGSIPKNKTKENILEEFSKVTEGLVD-VI 277

Query: 126 VLRGPDGTSK--GCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
           +   PD   K  G  F++++ H  A  A   L S + +    + + V++AD  +E
Sbjct: 278 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEE 331



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 21/191 (10%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKY-----TGLHKGCAFLTYCARDSAL 62
           +LFVG IP++   K  + I E+F ++ E  V    Y        ++G  FL Y    SA 
Sbjct: 247 RLFVGSIPKN---KTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 303

Query: 63  KAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEP 117
           +A+  L   K     N         V+  D E   + + LFV  L    T+E + K F  
Sbjct: 304 QARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363

Query: 118 FGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEK 177
           FG ++    L       K  AFV F+    A  A++ + + + + G    +V+     +K
Sbjct: 364 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEM-NGKEIEGEEIEIVLAKPPDKK 415

Query: 178 ERGLRRMQQVA 188
            +  +  +Q +
Sbjct: 416 RKERQAARQAS 426



 Score = 35.0 bits (79), Expect = 0.14
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 92  GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP-DGTSKGCAFVKFQTHAEAQA 150
           G   ++FVG + +   ++++  +FE  G I +  ++  P  G ++G AF+ F     AQ 
Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221

Query: 151 AINTLHSSRTLPGASSSLVVKFAD 174
           A+    S    PG    + +  A+
Sbjct: 222 AVKLCDSYEIRPGKHLGVCISVAN 245



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
           +F+ +L    T+  + + F  FG +   K   D        + FV F++  +A  A+  M
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 394

Query: 442 NGFQIGMKRLKVQLKRPKDANR 463
           NG +I  + +++ L +P D  R
Sbjct: 395 NGKEIEGEEIEIVLAKPPDKKR 416


>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 6 [Homo sapiens]
          Length = 562

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 46/155 (29%), Positives = 84/155 (54%), Gaps = 10/155 (6%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
           ++FVG+IPR L E +L P+FE+ G I++L ++ D  TGL++G AF+T+C +++A +A   
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222

Query: 68  LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTV 126
            +  +   G +  + +  A++       +LFVG + K +T E + + F      + +  +
Sbjct: 223 YNNHEIRSGKHIGVCISVANN-------RLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 275

Query: 127 LRGPDGTSK--GCAFVKFQTHAEAQAAINTLHSSR 159
              PD   K  G  F++++ H  A  A   L S +
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 310



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 25/193 (12%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFE-LTVI------KDKYTGLHKGCAFLTYCARDS 60
           +LFVG IP+    K  + I E+F ++ E LT +       DK    ++G  FL Y    +
Sbjct: 244 RLFVGSIPK---SKTKEQILEEFSKVTEGLTDVILYHQPDDKKK--NRGFCFLEYEDHKT 298

Query: 61  ALKAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMF 115
           A +A+  L   K     N         ++  D E   + + LFV  L    T+E + K F
Sbjct: 299 AAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAF 358

Query: 116 EPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADT 175
             FG ++    L       K  AF+ F     A  A+  + + + L G +  +V      
Sbjct: 359 SQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEM-NGKDLEGENIEIVFAKPPD 410

Query: 176 EKERGLRRMQQVA 188
           +K +  +  +Q A
Sbjct: 411 QKRKERKAQRQAA 423



 Score = 32.3 bits (72), Expect = 0.94
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
           +F+ +L    T+  + + F  FG +   K   D        + F+ FD    A  A++ M
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 391

Query: 442 NGFQIGMKRLKVQLKRPKDANR 463
           NG  +  + +++   +P D  R
Sbjct: 392 NGKDLEGENIEIVFAKPPDQKR 413


>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 2 [Homo sapiens]
          Length = 464

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 46/155 (29%), Positives = 84/155 (54%), Gaps = 10/155 (6%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
           ++FVG+IPR L E +L P+FE+ G I++L ++ D  TGL++G AF+T+C +++A +A   
Sbjct: 65  EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 124

Query: 68  LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTV 126
            +  +   G +  + +  A++       +LFVG + K +T E + + F      + +  +
Sbjct: 125 YNNHEIRSGKHIGVCISVANN-------RLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 177

Query: 127 LRGPDGTSK--GCAFVKFQTHAEAQAAINTLHSSR 159
              PD   K  G  F++++ H  A  A   L S +
Sbjct: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 212



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 25/193 (12%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFE-LTVI------KDKYTGLHKGCAFLTYCARDS 60
           +LFVG IP+    K  + I E+F ++ E LT +       DK    ++G  FL Y    +
Sbjct: 146 RLFVGSIPK---SKTKEQILEEFSKVTEGLTDVILYHQPDDKKK--NRGFCFLEYEDHKT 200

Query: 61  ALKAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMF 115
           A +A+  L   K     N         ++  D E   + + LFV  L    T+E + K F
Sbjct: 201 AAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAF 260

Query: 116 EPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADT 175
             FG ++    L       K  AF+ F     A  A+  + + + L G +  +V      
Sbjct: 261 SQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEM-NGKDLEGENIEIVFAKPPD 312

Query: 176 EKERGLRRMQQVA 188
           +K +  +  +Q A
Sbjct: 313 QKRKERKAQRQAA 325



 Score = 32.3 bits (72), Expect = 0.94
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
           +F+ +L    T+  + + F  FG +   K   D        + F+ FD    A  A++ M
Sbjct: 242 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 293

Query: 442 NGFQIGMKRLKVQLKRPKDANR 463
           NG  +  + +++   +P D  R
Sbjct: 294 NGKDLEGENIEIVFAKPPDQKR 315


>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 5 [Homo sapiens]
          Length = 561

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 46/155 (29%), Positives = 84/155 (54%), Gaps = 10/155 (6%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
           ++FVG+IPR L E +L P+FE+ G I++L ++ D  TGL++G AF+T+C +++A +A   
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222

Query: 68  LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTV 126
            +  +   G +  + +  A++       +LFVG + K +T E + + F      + +  +
Sbjct: 223 YNNHEIRSGKHIGVCISVANN-------RLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 275

Query: 127 LRGPDGTSK--GCAFVKFQTHAEAQAAINTLHSSR 159
              PD   K  G  F++++ H  A  A   L S +
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 310



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 25/193 (12%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFE-LTVI------KDKYTGLHKGCAFLTYCARDS 60
           +LFVG IP+    K  + I E+F ++ E LT +       DK    ++G  FL Y    +
Sbjct: 244 RLFVGSIPK---SKTKEQILEEFSKVTEGLTDVILYHQPDDKKK--NRGFCFLEYEDHKT 298

Query: 61  ALKAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMF 115
           A +A+  L   K     N         ++  D E   + + LFV  L    T+E + K F
Sbjct: 299 AAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAF 358

Query: 116 EPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADT 175
             FG ++    L       K  AF+ F     A  A+  + + + L G +  +V      
Sbjct: 359 SQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEM-NGKDLEGENIEIVFAKPPD 410

Query: 176 EKERGLRRMQQVA 188
           +K +  +  +Q A
Sbjct: 411 QKRKERKAQRQAA 423



 Score = 32.3 bits (72), Expect = 0.94
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
           +F+ +L    T+  + + F  FG +   K   D        + F+ FD    A  A++ M
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 391

Query: 442 NGFQIGMKRLKVQLKRPKDANR 463
           NG  +  + +++   +P D  R
Sbjct: 392 NGKDLEGENIEIVFAKPPDQKR 413


>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 1 [Homo sapiens]
          Length = 623

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 46/155 (29%), Positives = 84/155 (54%), Gaps = 10/155 (6%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
           ++FVG+IPR L E +L P+FE+ G I++L ++ D  TGL++G AF+T+C +++A +A   
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222

Query: 68  LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTV 126
            +  +   G +  + +  A++       +LFVG + K +T E + + F      + +  +
Sbjct: 223 YNNHEIRSGKHIGVCISVANN-------RLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 275

Query: 127 LRGPDGTSK--GCAFVKFQTHAEAQAAINTLHSSR 159
              PD   K  G  F++++ H  A  A   L S +
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGK 310



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 25/193 (12%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFE-LTVI------KDKYTGLHKGCAFLTYCARDS 60
           +LFVG IP+    K  + I E+F ++ E LT +       DK    ++G  FL Y    +
Sbjct: 244 RLFVGSIPK---SKTKEQILEEFSKVTEGLTDVILYHQPDDKKK--NRGFCFLEYEDHKT 298

Query: 61  ALKAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMF 115
           A +A+  L   K     N         ++  D E   + + LFV  L    T+E + K F
Sbjct: 299 AAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAF 358

Query: 116 EPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADT 175
             FG ++    L       K  AF+ F     A  A+  + + + L G +  +V      
Sbjct: 359 SQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEM-NGKDLEGENIEIVFAKPPD 410

Query: 176 EKERGLRRMQQVA 188
           +K +  +  +Q A
Sbjct: 411 QKRKERKAQRQAA 423



 Score = 32.3 bits (72), Expect = 0.94
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
           +F+ +L    T+  + + F  FG +   K   D        + F+ FD    A  A++ M
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 391

Query: 442 NGFQIGMKRLKVQLKRPKDANR 463
           NG  +  + +++   +P D  R
Sbjct: 392 NGKDLEGENIEIVFAKPPDQKR 413


>gi|38201714 ELAV-like 1 [Homo sapiens]
          Length = 326

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 6/167 (3%)

Query: 9   LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
           L V  +P+++ + +L+ +F   G +    +I+DK  G   G  F+ Y    +A  A+ A+
Sbjct: 22  LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYV---TAKDAERAI 78

Query: 69  HEQKTLPGMNRPIQVKPADSESRG-EDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVL 127
           +    L   ++ I+V  A   S   +D  L++  L +  T +DV  MF  FG I    VL
Sbjct: 79  NTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138

Query: 128 RGPD-GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFA 173
                G S+G AF++F   +EA+ AI + +  +  PG+S  + VKFA
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKP-PGSSEPITVKFA 184



 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 36/81 (44%), Positives = 49/81 (60%)

Query: 379 GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAI 438
           G  IFIY+L Q+  +  + QMF PFG V + KV  D  TN+ K FGFV+  N   A  AI
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302

Query: 439 QAMNGFQIGMKRLKVQLKRPK 459
            ++NG+++G K L+V  K  K
Sbjct: 303 ASLNGYRLGDKILQVSFKTNK 323



 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 53/203 (26%)

Query: 9   LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
           L++  +PR + +KD++ +F +FGRI    V+ D+ TGL +G AF+ +  R  A +A ++ 
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167

Query: 69  HEQKTLPGMNRPIQVKPADSESRGEDRKL------------------------------- 97
           +  K  PG + PI VK A + ++ ++  L                               
Sbjct: 168 NGHKP-PGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVD 226

Query: 98  --------------------FVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PDGTSKG 136
                               F+  LG+   +  + +MF PFG +    V+R       KG
Sbjct: 227 HMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKG 286

Query: 137 CAFVKFQTHAEAQAAINTLHSSR 159
             FV    + EA  AI +L+  R
Sbjct: 287 FGFVTMTNYEEAAMAIASLNGYR 309



 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
           N+ + +LPQ  T  E+  +F   G V SAK+  D+    S  +GFV++     A+ AI  
Sbjct: 21  NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80

Query: 441 MNGFQIGMKRLKVQLKRP-----KDAN 462
           +NG ++  K +KV   RP     KDAN
Sbjct: 81  LNGLRLQSKTIKVSYARPSSEVIKDAN 107



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 23/63 (36%), Positives = 38/63 (60%)

Query: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
           N++I  LP+  T  ++  MF  FG +I+++V VD+ T  S+   F+ FD  + A+ AI +
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166

Query: 441 MNG 443
            NG
Sbjct: 167 FNG 169


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 51/177 (28%), Positives = 94/177 (53%), Gaps = 14/177 (7%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
           ++FVG+IPR L E +L P+FE+ G I++L ++ D  +G ++G AF+T+C +++A +A   
Sbjct: 65  EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 124

Query: 68  LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV- 126
               +  PG +  + +  A++       +LFVG + K +T E++ + F     + E  V 
Sbjct: 125 CDSYEIRPGKHLGVCISVANN-------RLFVGSIPKNKTKENILEEFSKVTGLTEGLVD 177

Query: 127 ---LRGPDGTSK--GCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
                 PD   K  G  F++++ H  A  A   L S + +    + + V++AD  +E
Sbjct: 178 VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEE 233



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 28/196 (14%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELT-----VI-----KDKYTGLHKGCAFLTYCA 57
           +LFVG IP++   K  + I E+F ++  LT     VI      DK    ++G  FL Y  
Sbjct: 146 RLFVGSIPKN---KTKENILEEFSKVTGLTEGLVDVILYHQPDDKKK--NRGFCFLEYED 200

Query: 58  RDSALKAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLGKQQTDEDVR 112
             SA +A+  L   K     N         V+  D E   + + LFV  L    T+E + 
Sbjct: 201 HKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILE 260

Query: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
           K F  FG ++    L       K  AFV F+    A  A++ + + + + G    +V+  
Sbjct: 261 KSFSEFGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEM-NGKEIEGEEIEIVLAK 312

Query: 173 ADTEKERGLRRMQQVA 188
              +K +  +  +Q +
Sbjct: 313 PPDKKRKERQAARQAS 328



 Score = 35.0 bits (79), Expect = 0.14
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 92  GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP-DGTSKGCAFVKFQTHAEAQA 150
           G   ++FVG + +   ++++  +FE  G I +  ++  P  G ++G AF+ F     AQ 
Sbjct: 61  GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120

Query: 151 AINTLHSSRTLPGASSSLVVKFAD 174
           A+    S    PG    + +  A+
Sbjct: 121 AVKLCDSYEIRPGKHLGVCISVAN 144



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
           +F+ +L    T+  + + F  FG +   K   D        + FV F++  +A  A+  M
Sbjct: 245 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 296

Query: 442 NGFQIGMKRLKVQLKRPKDANR 463
           NG +I  + +++ L +P D  R
Sbjct: 297 NGKEIEGEEIEIVLAKPPDKKR 318


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 51/177 (28%), Positives = 94/177 (53%), Gaps = 14/177 (7%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
           ++FVG+IPR L E +L P+FE+ G I++L ++ D  +G ++G AF+T+C +++A +A   
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225

Query: 68  LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV- 126
               +  PG +  + +  A++       +LFVG + K +T E++ + F     + E  V 
Sbjct: 226 CDSYEIRPGKHLGVCISVANN-------RLFVGSIPKNKTKENILEEFSKVTGLTEGLVD 278

Query: 127 ---LRGPDGTSK--GCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
                 PD   K  G  F++++ H  A  A   L S + +    + + V++AD  +E
Sbjct: 279 VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEE 334



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 28/196 (14%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELT-----VI-----KDKYTGLHKGCAFLTYCA 57
           +LFVG IP++   K  + I E+F ++  LT     VI      DK    ++G  FL Y  
Sbjct: 247 RLFVGSIPKN---KTKENILEEFSKVTGLTEGLVDVILYHQPDDKKK--NRGFCFLEYED 301

Query: 58  RDSALKAQSALHEQKTLPGMNRPI-----QVKPADSESRGEDRKLFVGMLGKQQTDEDVR 112
             SA +A+  L   K     N         V+  D E   + + LFV  L    T+E + 
Sbjct: 302 HKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILE 361

Query: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
           K F  FG ++    L       K  AFV F+    A  A++ + + + + G    +V+  
Sbjct: 362 KSFSEFGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEM-NGKEIEGEEIEIVLAK 413

Query: 173 ADTEKERGLRRMQQVA 188
              +K +  +  +Q +
Sbjct: 414 PPDKKRKERQAARQAS 429



 Score = 35.0 bits (79), Expect = 0.14
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 92  GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP-DGTSKGCAFVKFQTHAEAQA 150
           G   ++FVG + +   ++++  +FE  G I +  ++  P  G ++G AF+ F     AQ 
Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221

Query: 151 AINTLHSSRTLPGASSSLVVKFAD 174
           A+    S    PG    + +  A+
Sbjct: 222 AVKLCDSYEIRPGKHLGVCISVAN 245



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
           +F+ +L    T+  + + F  FG +   K   D        + FV F++  +A  A+  M
Sbjct: 346 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 397

Query: 442 NGFQIGMKRLKVQLKRPKDANR 463
           NG +I  + +++ L +P D  R
Sbjct: 398 NGKEIEGEEIEIVLAKPPDKKR 419


>gi|51317355 RNA binding motif, single stranded interacting protein
           3 isoform 1 [Homo sapiens]
          Length = 437

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 98/404 (24%), Positives = 153/404 (37%), Gaps = 73/404 (18%)

Query: 9   LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
           L++  +P    ++DL  + + +G+I     I DK T   KG  F+ +   DS   AQ A+
Sbjct: 63  LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF---DSPAAAQKAV 119

Query: 69  HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLR 128
              K        +Q + A  + + +   L++  L     ++++  M +PFG +    +LR
Sbjct: 120 ASLKA-----NGVQAQMAKQQEQ-DPTNLYISNLPISMDEQELENMLKPFGHVISTRILR 173

Query: 129 GPDGTSKGCAFVKFQTHAEAQAAI-----NTLHSSRTLPGASSSLVVKFADTEKERGLRR 183
             +G S+G  F + ++  + +  I       L +   +P  S  L+ KFAD  +++  R+
Sbjct: 174 DANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK--RQ 231

Query: 184 MQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAI 243
            Q   TQ G   P   + G    Y      Q       +  Y SP             +I
Sbjct: 232 NQSKYTQNGRPWPREGEAGMALTYDPTAAIQ-------NGFYSSPY------------SI 272

Query: 244 NANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQP-TGQPAPDALYPNG 302
             N +I         TS  P IAA+PVS       V   S +P  P   QP    + P  
Sbjct: 273 ATNRMIPQ-------TSITPFIAASPVSTYQ----VQSTSWMPHPPYVMQPTGAVITPTM 321

Query: 303 VHPYPAQSPAAPVDPLQQAYAGM----------------------QHYTAAYPAAYSLVA 340
            HP   Q PA  + PL Q    +                      Q+ TAA P   + + 
Sbjct: 322 DHPMSMQ-PANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTYIP 380

Query: 341 PAFPQPPALVAQQ---PPPPPQQQQQQQQQQQQQQQREGPDGCN 381
              P PP  V+ +       PQ      Q    QQQ+   D  N
Sbjct: 381 QYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSN 424



 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 10/137 (7%)

Query: 320 QAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDG 379
           Q Y    +Y   Y       APA P P A       PP                 E    
Sbjct: 9   QMYPQYTYYYPHYLQTKQSYAPA-PHPMA-------PPSPSTNSSSNNSSNNSSGEQLSK 60

Query: 380 CNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQ 439
            N++I  LP   TD +++++  P+G ++S K  +D+ TNQ K +GFV FD+PA+AQ A+ 
Sbjct: 61  TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVA 120

Query: 440 AM--NGFQIGMKRLKVQ 454
           ++  NG Q  M + + Q
Sbjct: 121 SLKANGVQAQMAKQQEQ 137



 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 364 QQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCF 423
           Q Q  +QQ+Q    D  N++I +LP    + E+  M  PFGHVIS ++  D A   S+  
Sbjct: 128 QAQMAKQQEQ----DPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGV 182

Query: 424 GFVSFDNPASAQAAIQAMNG 443
           GF   ++    +  IQ  NG
Sbjct: 183 GFARMESTEKCEVVIQHFNG 202


>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 3 [Homo sapiens]
          Length = 527

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 43/144 (29%), Positives = 80/144 (55%), Gaps = 10/144 (6%)

Query: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
           ++FVG+IPR L E +L P+FE+ G I++L ++ D  TGL++G AF+T+C +++A +A   
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222

Query: 68  LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTV 126
            +  +   G +  + +  A++       +LFVG + K +T E + + F      + +  +
Sbjct: 223 YNNHEIRSGKHIGVCISVANN-------RLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 275

Query: 127 LRGPDGTSK--GCAFVKFQTHAEA 148
              PD   K  G  F++++ H  A
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTA 299



 Score = 33.5 bits (75), Expect = 0.42
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 10/84 (11%)

Query: 9   LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
           LFV  +   + E+ L+  F QFG++  +  +KD         AF+ +  RD A+KA   +
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 356

Query: 69  HEQKTLPGMNRPIQ-VKPADSESR 91
           +  K L G N  I   KP D + +
Sbjct: 357 N-GKDLEGENIEIVFAKPPDQKRK 379



 Score = 32.3 bits (72), Expect = 0.94
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
           +F+ +L    T+  + + F  FG +   K   D        + F+ FD    A  A++ M
Sbjct: 305 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 356

Query: 442 NGFQIGMKRLKVQLKRPKDANR 463
           NG  +  + +++   +P D  R
Sbjct: 357 NGKDLEGENIEIVFAKPPDQKR 378


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,492,428
Number of Sequences: 37866
Number of extensions: 1065595
Number of successful extensions: 19935
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 662
Number of HSP's that attempted gapping in prelim test: 9343
Number of HSP's gapped (non-prelim): 6441
length of query: 465
length of database: 18,247,518
effective HSP length: 106
effective length of query: 359
effective length of database: 14,233,722
effective search space: 5109906198
effective search space used: 5109906198
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.