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Search of human proteins with 71164892
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71164892 gremlin 2 precursor [Homo sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71164892 gremlin 2 precursor [Homo sapiens] 347 4e-96
gi|7019349 gremlin-1 precursor [Homo sapiens] 195 2e-50
gi|4885509 neuroblastoma, suppression of tumorigenicity 1 2 prec... 72 2e-13
gi|115387106 neuroblastoma, suppression of tumorigenicity 1 1 [H... 72 2e-13
gi|4885135 cerberus 1 [Homo sapiens] 65 3e-11
gi|116284392 mucin 2 precursor [Homo sapiens] 42 2e-04
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 42 2e-04
gi|22749329 dante precursor [Homo sapiens] 42 2e-04
gi|13376846 sclerostin precursor [Homo sapiens] 35 0.030
gi|151301154 mucin 6, gastric [Homo sapiens] 35 0.030
gi|239740995 PREDICTED: hypothetical protein XP_002342058 [Homo ... 33 0.088
gi|19224660 protein kinase C and casein kinase substrate in neur... 32 0.20
gi|5729858 nuclear receptor coactivator 2 [Homo sapiens] 31 0.57
gi|22538457 nuclear receptor coactivator 1 isoform 2 [Homo sapiens] 30 0.75
gi|22538459 nuclear receptor coactivator 1 isoform 3 [Homo sapiens] 30 0.75
gi|22538455 nuclear receptor coactivator 1 isoform 1 [Homo sapiens] 30 0.75
gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens] 29 1.7
gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens] 29 1.7
gi|239756266 PREDICTED: hypothetical protein XP_002344876 [Homo ... 29 1.7
gi|239750817 PREDICTED: hypothetical protein XP_002347570 [Homo ... 29 1.7
gi|239745179 PREDICTED: hypothetical protein XP_002343382 [Homo ... 29 1.7
gi|4503123 connective tissue growth factor [Homo sapiens] 29 2.2
gi|48717241 zinc finger protein 425 [Homo sapiens] 29 2.2
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 28 2.8
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 28 2.8
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 28 2.8
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 28 2.8
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 28 2.8
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 28 2.8
gi|194097432 hypothetical protein LOC285966 B [Homo sapiens] 28 3.7
>gi|71164892 gremlin 2 precursor [Homo sapiens]
Length = 168
Score = 347 bits (889), Expect = 4e-96
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MFWKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQHQIKEVLASSQEAL 60
MFWKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQHQIKEVLASSQEAL
Sbjct: 1 MFWKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQHQIKEVLASSQEAL 60
Query: 61 VVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSC 120
VVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSC
Sbjct: 61 VVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSC 120
Query: 121 AFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRCMSVNLSDSDKQ 168
AFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRCMSVNLSDSDKQ
Sbjct: 121 AFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRCMSVNLSDSDKQ 168
>gi|7019349 gremlin-1 precursor [Homo sapiens]
Length = 184
Score = 195 bits (495), Expect = 2e-50
Identities = 96/173 (55%), Positives = 120/173 (69%), Gaps = 20/173 (11%)
Query: 9 LFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQHQIK------------------ 50
L L+ L+ AE +K GAIP P K N+SE+ Q +
Sbjct: 12 LLLLGTLLPAAEGKKKGSQGAIPPPDK-AQHNDSEQTQSPQQPGSRNRGRGQGRGTAMPG 70
Query: 51 -EVLASSQEALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRH 109
EVL SSQEAL VTERKYLK DWCKTQPL+QT+ EEGC SRTI+NRFCYGQCNSFYIPRH
Sbjct: 71 EEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYGQCNSFYIPRH 130
Query: 110 VKKEEESFQSCAFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRCMSVNL 162
++KEE SFQSC+FCKP++ T+++V L CP L PP + K++ +VKQCRC+S++L
Sbjct: 131 IRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCISIDL 183
>gi|4885509 neuroblastoma, suppression of tumorigenicity 1 2
precursor [Homo sapiens]
Length = 180
Score = 72.0 bits (175), Expect = 2e-13
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 69 KSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSCAFCKPQRV 128
KS WC+ + + Q V GC +++I NR C GQC S+ +P + ES C C P +
Sbjct: 30 KSAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQS 89
Query: 129 TSVLVELECPGLDPPFRLKK-IQKVKQCRCMS 159
+V LECPG + R+ K ++K+ C C +
Sbjct: 90 MWEIVTLECPGHEEVPRVDKLVEKILHCSCQA 121
>gi|115387106 neuroblastoma, suppression of tumorigenicity 1 1 [Homo
sapiens]
Length = 216
Score = 72.0 bits (175), Expect = 2e-13
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 69 KSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSCAFCKPQRV 128
KS WC+ + + Q V GC +++I NR C GQC S+ +P + ES C C P +
Sbjct: 66 KSAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQS 125
Query: 129 TSVLVELECPGLDPPFRLKK-IQKVKQCRCMS 159
+V LECPG + R+ K ++K+ C C +
Sbjct: 126 MWEIVTLECPGHEEVPRVDKLVEKILHCSCQA 157
>gi|4885135 cerberus 1 [Homo sapiens]
Length = 267
Score = 65.1 bits (157), Expect = 3e-11
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 45 WQHQIKEVLASSQEALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSF 104
W H + +SQ ++ + + + C+T P QT++ EGC + N C+G+C S
Sbjct: 134 WHHFMFRKTPASQGVILPIKSHEVHWETCRTVPFSQTITHEGCEKVVVQNNLCFGKCGSV 193
Query: 105 YIPRHVKKEEESFQSCAFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRC 157
+ P + S SC+ C P + T++ + L C L +K + V++C+C
Sbjct: 194 HFP---GAAQHSHTSCSHCLPAKFTTMHLPLNCTELSSV--IKVVMLVEECQC 241
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 42.4 bits (98), Expect = 2e-04
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 73 CKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSVL 132
C T P+ VS GC ++T+L C G C +F + + K + SC+ CK ++ +
Sbjct: 5075 CSTVPVTTEVSYAGC-TKTVLMNHCSGSCGTFVM--YSAKAQALDHSCSCCKEEKTSQRE 5131
Query: 133 VELECP 138
V L CP
Sbjct: 5132 VVLSCP 5137
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 42.4 bits (98), Expect = 2e-04
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 73 CKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSVL 132
C T P+ VS GC ++T+L C G C +F + + K + SC+ CK ++ +
Sbjct: 2535 CSTVPVTTEVSYAGC-TKTVLMNHCSGSCGTFVM--YSAKAQALDHSCSCCKEEKTSQRE 2591
Query: 133 VELECP 138
V L CP
Sbjct: 2592 VVLSCP 2597
>gi|22749329 dante precursor [Homo sapiens]
Length = 189
Score = 42.4 bits (98), Expect = 2e-04
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 73 CKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSVL 132
CK P Q S GC + + N C+G C+S YIP + C C P R
Sbjct: 101 CKAVPFVQVFSRPGCSAIRLRNHLCFGHCSSLYIP---GSDPTPLVLCNSCMPARKRWAP 157
Query: 133 VELEC-PGLDPPFRLKKIQK--VKQCRC 157
V L C G R KI ++ C C
Sbjct: 158 VVLWCLTGSSASRRRVKISTMLIEGCHC 185
>gi|13376846 sclerostin precursor [Homo sapiens]
Length = 213
Score = 35.0 bits (79), Expect = 0.030
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 64 ERKYLKSDWCKTQPLRQTVSEEGCRS-RTILNRFCYGQCN-SFYIPRHVKKEEESFQSCA 121
E K + C+ + V++ CRS + + C GQC + +P + + + S
Sbjct: 71 ETKDVSEYSCRELHFTRYVTDGPCRSAKPVTELVCSGQCGPARLLPNAIGRGKWWRPSGP 130
Query: 122 F--CKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRC 157
C P R + V+L CPG + P R +K++ V C+C
Sbjct: 131 DFRCIPDRYRAQRVQLLCPGGEAP-RARKVRLVASCKC 167
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 35.0 bits (79), Expect = 0.030
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 73 CKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSVL 132
C + ++ ++ +GC + + R C G C S + ++ ++ SC C+P
Sbjct: 2349 CSVREQQEEITFKGCMANVTVTR-CEGACISAASFNIITQQVDARCSC--CRPLHSYEQQ 2405
Query: 133 VELECPGLDPPFR--LKKIQKVKQCRCMSVNLSD 164
+EL CP P R + +Q C C SV D
Sbjct: 2406 LELPCPDPSTPGRRLVLTLQVFSHCVCSSVACGD 2439
>gi|239740995 PREDICTED: hypothetical protein XP_002342058 [Homo
sapiens]
Length = 361
Score = 33.5 bits (75), Expect = 0.088
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 7 LSLFLVAVLVKVAEARKNR----PAGAIPSPYKDGSSN----NSERWQHQIKEVLASSQE 58
L F +++ V + E RK + P +P P G NSE+W H+I ++ ++E
Sbjct: 199 LEAFSLSLKVSLDEHRKTKTNEPPQPPVPEPANAGERKMREFNSEKWNHRIADLRKQTEE 258
Query: 59 ALVVTERKY 67
++ERKY
Sbjct: 259 ---LSERKY 264
>gi|19224660 protein kinase C and casein kinase substrate in neurons
3 [Homo sapiens]
Length = 424
Score = 32.3 bits (72), Expect = 0.20
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 35 KDGSSNNSERWQHQIKEVLASSQ--------EALVVTERKYLKSDWCKTQPLRQTVSE-- 84
+DG + W ++KEV AS + E T + K+D +Q + + E
Sbjct: 133 EDGFRKAQKPWLKRLKEVEASKKSYHAARKDEKTAQTRESHAKADSAVSQEQLRKLQERV 192
Query: 85 EGCRSRTILNRFCYGQCNSF---YIPRHVKKEEESFQSCAFCKPQRV 128
E C + Y Q + Y PR+++ E++F++C + QR+
Sbjct: 193 ERCAKEAEKTKAQYEQTLAELHRYTPRYMEDMEQAFETCQAAERQRL 239
>gi|5729858 nuclear receptor coactivator 2 [Homo sapiens]
Length = 1464
Score = 30.8 bits (68), Expect = 0.57
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 84 EEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSCAFCKPQRV 128
EEG ++ ++ QC + P+ +K+E E QSC C +RV
Sbjct: 212 EEGHDNQEAHQKYETMQCFAVSQPKSIKEEGEDLQSCLICVARRV 256
>gi|22538457 nuclear receptor coactivator 1 isoform 2 [Homo sapiens]
Length = 1399
Score = 30.4 bits (67), Expect = 0.75
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 84 EEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSCAFCKPQRV 128
E G ++ R+ QC + P+ ++++ E FQSC C +R+
Sbjct: 206 EPGTENQEACQRYEVMQCFTVSQPKSIQEDGEDFQSCLICIARRL 250
>gi|22538459 nuclear receptor coactivator 1 isoform 3 [Homo sapiens]
Length = 1440
Score = 30.4 bits (67), Expect = 0.75
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 84 EEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSCAFCKPQRV 128
E G ++ R+ QC + P+ ++++ E FQSC C +R+
Sbjct: 206 EPGTENQEACQRYEVMQCFTVSQPKSIQEDGEDFQSCLICIARRL 250
>gi|22538455 nuclear receptor coactivator 1 isoform 1 [Homo sapiens]
Length = 1441
Score = 30.4 bits (67), Expect = 0.75
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 84 EEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSCAFCKPQRV 128
E G ++ R+ QC + P+ ++++ E FQSC C +R+
Sbjct: 206 EPGTENQEACQRYEVMQCFTVSQPKSIQEDGEDFQSCLICIARRL 250
>gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens]
Length = 1424
Score = 29.3 bits (64), Expect = 1.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 100 QCNSFYIPRHVKKEEESFQSCAFCKPQRVTS 130
QC + PR + +E E QSC C +R+T+
Sbjct: 225 QCFALSQPRAMMEEGEDLQSCMICVARRITT 255
>gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens]
Length = 1420
Score = 29.3 bits (64), Expect = 1.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 100 QCNSFYIPRHVKKEEESFQSCAFCKPQRVTS 130
QC + PR + +E E QSC C +R+T+
Sbjct: 225 QCFALSQPRAMMEEGEDLQSCMICVARRITT 255
>gi|239756266 PREDICTED: hypothetical protein XP_002344876 [Homo
sapiens]
Length = 156
Score = 29.3 bits (64), Expect = 1.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 3 WKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQ 46
W L L + L + +AE RK+RP +P P+ D S + + Q
Sbjct: 83 WGLRLQVQLRSPSQSLAEGRKHRPPLPLPEPHCDSRSTSGPQRQ 126
>gi|239750817 PREDICTED: hypothetical protein XP_002347570 [Homo
sapiens]
Length = 156
Score = 29.3 bits (64), Expect = 1.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 3 WKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQ 46
W L L + L + +AE RK+RP +P P+ D S + + Q
Sbjct: 83 WGLRLQVQLRSPSQSLAEGRKHRPPLPLPEPHCDSRSTSGPQRQ 126
>gi|239745179 PREDICTED: hypothetical protein XP_002343382 [Homo
sapiens]
Length = 156
Score = 29.3 bits (64), Expect = 1.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 3 WKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQ 46
W L L + L + +AE RK+RP +P P+ D S + + Q
Sbjct: 83 WGLRLQVQLRSPSQSLAEGRKHRPPLPLPEPHCDSRSTSGPQRQ 126
>gi|4503123 connective tissue growth factor [Homo sapiens]
Length = 349
Score = 28.9 bits (63), Expect = 2.2
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 123 CKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRC 157
C P R T++ VE +CP D K + +K C C
Sbjct: 293 CTPHRTTTLPVEFKCP--DGEVMKKNMMFIKTCAC 325
>gi|48717241 zinc finger protein 425 [Homo sapiens]
Length = 752
Score = 28.9 bits (63), Expect = 2.2
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 12/89 (13%)
Query: 64 ERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSCAFC 123
+R Y + KT R + + C R FC G+C ++ Q C
Sbjct: 271 QRPYPCPECDKTFRYRANLKKHLCLHRGE-RPFCCGECGRAFV-----------QQCELT 318
Query: 124 KPQRVTSVLVELECPGLDPPFRLKKIQKV 152
+ R+ S +CP D FRLK+ KV
Sbjct: 319 EHLRLHSGEKPFQCPQCDRCFRLKRGMKV 347
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 28.5 bits (62), Expect = 2.8
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 73 CKTQPLRQTVSEEGCRSRTILNRF-CYGQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSV 131
CK +R T+ + CRS T +N C G+C S I + F C C+ +
Sbjct: 2767 CKKVTIRMTIRKNECRSSTPVNLVSCDGRCPSASIYNYNINTYARF--CKCCREVGLQRR 2824
Query: 132 LVELECPGLDPPFRLKKIQKVKQCRC 157
V+L C + + +Q+ C C
Sbjct: 2825 SVQLFC-ATNATWVPYTVQEPTDCAC 2849
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 28.5 bits (62), Expect = 2.8
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 73 CKTQPLRQTVSEEGCRSRTILNRF-CYGQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSV 131
CK +R T+ + CRS T +N C G+C S I + F C C+ +
Sbjct: 2839 CKKVTIRMTIRKNECRSSTPVNLVSCDGRCPSASIYNYNINTYARF--CKCCREVGLQRR 2896
Query: 132 LVELECPGLDPPFRLKKIQKVKQCRC 157
V+L C + + +Q+ C C
Sbjct: 2897 SVQLFC-ATNATWVPYTVQEPTDCAC 2921
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 28.5 bits (62), Expect = 2.8
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 73 CKTQPLRQTVSEEGCRSRTILNRF-CYGQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSV 131
CK +R T+ + CRS T +N C G+C S I + F C C+ +
Sbjct: 2767 CKKVTIRMTIRKNECRSSTPVNLVSCDGRCPSASIYNYNINTYARF--CKCCREVGLQRR 2824
Query: 132 LVELECPGLDPPFRLKKIQKVKQCRC 157
V+L C + + +Q+ C C
Sbjct: 2825 SVQLFC-ATNATWVPYTVQEPTDCAC 2849
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 28.5 bits (62), Expect = 2.8
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 73 CKTQPLRQTVSEEGCRSRTILNRF-CYGQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSV 131
CK +R T+ + CRS T +N C G+C S I + F C C+ +
Sbjct: 2839 CKKVTIRMTIRKNECRSSTPVNLVSCDGRCPSASIYNYNINTYARF--CKCCREVGLQRR 2896
Query: 132 LVELECPGLDPPFRLKKIQKVKQCRC 157
V+L C + + +Q+ C C
Sbjct: 2897 SVQLFC-ATNATWVPYTVQEPTDCAC 2921
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 28.5 bits (62), Expect = 2.8
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 73 CKTQPLRQTVSEEGCRSRTILNRF-CYGQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSV 131
CK +R T+ + CRS T +N C G+C S I + F C C+ +
Sbjct: 2767 CKKVTIRMTIRKNECRSSTPVNLVSCDGRCPSASIYNYNINTYARF--CKCCREVGLQRR 2824
Query: 132 LVELECPGLDPPFRLKKIQKVKQCRC 157
V+L C + + +Q+ C C
Sbjct: 2825 SVQLFC-ATNATWVPYTVQEPTDCAC 2849
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 28.5 bits (62), Expect = 2.8
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 73 CKTQPLRQTVSEEGCRSRTILNRF-CYGQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSV 131
CK +R T+ + CRS T +N C G+C S I + F C C+ +
Sbjct: 2839 CKKVTIRMTIRKNECRSSTPVNLVSCDGRCPSASIYNYNINTYARF--CKCCREVGLQRR 2896
Query: 132 LVELECPGLDPPFRLKKIQKVKQCRC 157
V+L C + + +Q+ C C
Sbjct: 2897 SVQLFC-ATNATWVPYTVQEPTDCAC 2921
>gi|194097432 hypothetical protein LOC285966 B [Homo sapiens]
Length = 564
Score = 28.1 bits (61), Expect = 3.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 28 GAIPSPYKDGSSNNSERWQHQIKEVLA 54
GA+P+PY + E W+ Q++E LA
Sbjct: 352 GAVPAPYYKLGKTSLEEWKRQMQENLA 378
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.131 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,566,694
Number of Sequences: 37866
Number of extensions: 270606
Number of successful extensions: 699
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 40
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.