Guide to the Human Genome
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Name: LOC100291085 Sequence: fasta or formatted (156aa) NCBI GI: 239750817
Description:

PREDICTED: hypothetical protein XP_002347570

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         18           2
 C cysteine            0.6          1           1
 D aspartate           1.9          3           1
 E glutamate           3.8          6           1
 F phenylalanine       0.0          0           0
 G glycine             9.6         15           2
 H histidine           3.8          6           1
 I isoleucine          1.3          2           1
 K lysine              4.5          7           1
 L leucine            12.2         19           3
 M methionine          0.6          1           1
 N asparagine          2.6          4           1
 P proline            12.8         20           3
 Q glutamine           5.1          8           1
 R arginine            9.0         14           1
 S serine             12.2         19           2
 T threonine           2.6          4           1
 V valine              4.5          7           2
 W tryptophan          1.3          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347570 
LOC100292002          1.000   PREDICTED: hypothetical protein XP_002344876 
LOC100289266          0.993   PREDICTED: hypothetical protein XP_002343382 
RERE                  0.055   atrophin-1 like protein isoform b 
RERE                  0.055   atrophin-1 like protein isoform a 
RERE                  0.055   atrophin-1 like protein isoform a 
ULK1                  0.045   Unc-51-like kinase 1 
FOXP4                 0.041   forkhead box P4 isoform 3 
FOXP4                 0.041   forkhead box P4 isoform 2 
FOXP4                 0.041   forkhead box P4 isoform 1 
AIM1                  0.038   absent in melanoma 1 
GSPT1                 0.034   G1 to S phase transition 1 isoform 2 
DACT3                 0.034   thymus expressed gene 3-like 
DIAPH1                0.034   diaphanous 1 isoform 2 
DIAPH1                0.034   diaphanous 1 isoform 1 
SRRM2                 0.034   splicing coactivator subunit SRm300 
CX3CL1                0.031   chemokine (C-X3-C motif) ligand 1 
GSPT1                 0.031   G1 to S phase transition 1 isoform 1 
SLC12A2               0.027   solute carrier family 12 (sodium/potassium/chloride t...
KIAA1715              0.027   Lunapark 
LOC100290023          0.027   PREDICTED: hypothetical protein XP_002348147 
ARMC5                 0.027   armadillo repeat containing 5 isoform b 
ARMC5                 0.027   armadillo repeat containing 5 isoform a 
FLJ22184              0.027   PREDICTED: hypothetical protein LOC80164 
MUPCDH                0.027   mucin and cadherin-like isoform 1 
LOC100291634          0.024   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.024   PREDICTED: hypothetical protein XP_002346952 
LOC643827             0.024   PREDICTED: similar to cell recognition molecule CAS...
LOC100287232          0.024   PREDICTED: hypothetical protein XP_002342816 
LOC100133280          0.024   PREDICTED: similar to Putative POM121-like protein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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