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Search of human proteins with 71143112
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71143112 ring finger and WD repeat domain 3 [Homo sapiens]
(774 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71143112 ring finger and WD repeat domain 3 [Homo sapiens] 1564 0.0
gi|37595555 ring finger protein 125 [Homo sapiens] 45 2e-04
gi|34577087 ring finger protein 13 [Homo sapiens] 44 4e-04
gi|6005864 ring finger protein 13 [Homo sapiens] 44 4e-04
gi|5031825 ring finger protein 103 [Homo sapiens] 44 4e-04
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 44 6e-04
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 44 6e-04
gi|14149702 ring finger protein 167 [Homo sapiens] 44 6e-04
gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens] 43 0.001
gi|38045931 ring finger protein 122 [Homo sapiens] 43 0.001
gi|40807469 TRAF interacting protein [Homo sapiens] 42 0.002
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 41 0.004
gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens] 41 0.004
gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens] 41 0.004
gi|57165361 ring finger protein 165 [Homo sapiens] 40 0.008
gi|169166423 PREDICTED: hypothetical protein [Homo sapiens] 40 0.011
gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens] 40 0.011
gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens] 40 0.011
gi|94536782 tripartite motif-containing 35 isoform 2 [Homo sapiens] 39 0.014
gi|5174653 ring finger protein 6 [Homo sapiens] 39 0.018
gi|34305295 ring finger protein 6 [Homo sapiens] 39 0.018
gi|34305293 ring finger protein 6 [Homo sapiens] 39 0.018
gi|37622894 ring finger protein 126 [Homo sapiens] 39 0.024
gi|55743108 ATG16 autophagy related 16-like 2 [Homo sapiens] 39 0.024
gi|169160953 PREDICTED: hypothetical LOC644006 [Homo sapiens] 38 0.031
gi|239747623 PREDICTED: hypothetical protein XP_002347917 [Homo ... 38 0.031
gi|88943822 PREDICTED: hypothetical protein LOC644006 [Homo sapi... 38 0.031
gi|37588873 ring finger protein 128 isoform 1 [Homo sapiens] 38 0.031
gi|37588871 ring finger protein 128 isoform 2 [Homo sapiens] 38 0.031
gi|33859668 Rabring 7 [Homo sapiens] 38 0.031
>gi|71143112 ring finger and WD repeat domain 3 [Homo sapiens]
Length = 774
Score = 1564 bits (4049), Expect = 0.0
Identities = 774/774 (100%), Positives = 774/774 (100%)
Query: 1 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV 60
MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
Sbjct: 1 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV 60
Query: 61 ISSQATPPLLQPAPQLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSM 120
ISSQATPPLLQPAPQLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSM
Sbjct: 61 ISSQATPPLLQPAPQLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSM 120
Query: 121 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA 180
TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
Sbjct: 121 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA 180
Query: 181 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE 240
YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
Sbjct: 181 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE 240
Query: 241 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH 300
EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
Sbjct: 241 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH 300
Query: 301 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS 360
RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
Sbjct: 301 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS 360
Query: 361 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW 420
SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
Sbjct: 361 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW 420
Query: 421 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK 480
VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
Sbjct: 421 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK 480
Query: 481 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR 540
MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
Sbjct: 481 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR 540
Query: 541 PVWSCCWCLDEANYIYAGLANGSILVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA 600
PVWSCCWCLDEANYIYAGLANGSILVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
Sbjct: 541 PVWSCCWCLDEANYIYAGLANGSILVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA 600
Query: 601 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH 660
AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
Sbjct: 601 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH 660
Query: 661 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD 720
TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
Sbjct: 661 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD 720
Query: 721 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE 774
EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
Sbjct: 721 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE 774
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 45.4 bits (106), Expect = 2e-04
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 31/156 (19%)
Query: 252 VTCIDGGKTLPKQPSPQ----KSEPLLPSASMDEEEGDTCTICLEQWTNAGDHRLSALRC 307
V D GK+ P + + + +P LP S D C +CLE H+ RC
Sbjct: 4 VLSTDSGKSAPASATARALERRRDPELPVTSFD------CAVCLEVL-----HQPVRTRC 52
Query: 308 GHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKSSLLKEQM 367
GH+F CI+T LK CP C L + + A D + +RMKS
Sbjct: 53 GHVFCRSCIATSLKNNKWTCPYCR--------AYLPSEGVPATDVA--KRMKSE------ 96
Query: 368 LRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKL 403
+ AE ++ C +++ C + + LQ+L
Sbjct: 97 YKNCAECDTLVCLSEMRAHIRTCQKYIDKYGPLQEL 132
>gi|34577087 ring finger protein 13 [Homo sapiens]
Length = 381
Score = 44.3 bits (103), Expect = 4e-04
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 282 EEGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKCPQCNKK 333
+E D C ICL+++ + GD +L L C H + +C+ WL + CP C +K
Sbjct: 235 DEYDVCAICLDEYED-GD-KLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQK 284
>gi|6005864 ring finger protein 13 [Homo sapiens]
Length = 381
Score = 44.3 bits (103), Expect = 4e-04
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 282 EEGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKCPQCNKK 333
+E D C ICL+++ + GD +L L C H + +C+ WL + CP C +K
Sbjct: 235 DEYDVCAICLDEYED-GD-KLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQK 284
>gi|5031825 ring finger protein 103 [Homo sapiens]
Length = 685
Score = 44.3 bits (103), Expect = 4e-04
Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 17/141 (12%)
Query: 205 SEELQVSSSSDSDSDSSAEYGGVVDQAEE---SGAVILEEQLAGVSAEQEVTCIDGGKTL 261
SEE S D+++DS +E + +E +L S C K
Sbjct: 524 SEEEMSEGSQDTENDSESENTDTLSSEKEVFEDKQSVLHNSPGTASHCDAEACSCANKYC 583
Query: 262 PKQPSPQKSEPLLPSASMDEEEGD------------TCTICLEQWTNAGDHRLSALRCGH 309
P +K + ++ E D C +CLE + N L L CGH
Sbjct: 584 QTSPCERKGRSYGSYNTNEDMEPDWLTWPADMLHCTECVVCLENFENGC--LLMGLPCGH 641
Query: 310 LFGYRCISTWLKGQVRKCPQC 330
+F CI WL G CP C
Sbjct: 642 VFHQNCIVMWLAGGRHCCPVC 662
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 43.9 bits (102), Expect = 6e-04
Identities = 42/201 (20%), Positives = 79/201 (39%), Gaps = 11/201 (5%)
Query: 136 FLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSA--RLRAPLDAYFQVSRTQPDLPA 193
F+ S + G + R A R+ GGS S+ + + S + P+
Sbjct: 419 FMYSDSDSEPTGSVSNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPS 478
Query: 194 TTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILEEQ--LAGVSAEQE 251
++ E+ S+ + S+ S S SS G + V +E L +S Q
Sbjct: 479 SSSGGESSETSSDLFEGSNEGSSSSGSS----GARREGRHRAPVTFDESGSLPFLSLAQF 534
Query: 252 VTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDHRLSALRCGHLF 311
+ P+ + ++ + L + + + TC++C+ ++T ++L L C H +
Sbjct: 535 FLLNEDDDDQPRGLTKEQIDNLAMRSFGENDALKTCSVCITEYTEG--NKLRKLPCSHEY 592
Query: 312 GYRCISTWLKGQVRKCPQCNK 332
CI WL + CP C +
Sbjct: 593 HVHCIDRWL-SENSTCPICRR 612
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 43.9 bits (102), Expect = 6e-04
Identities = 42/201 (20%), Positives = 79/201 (39%), Gaps = 11/201 (5%)
Query: 136 FLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSA--RLRAPLDAYFQVSRTQPDLPA 193
F+ S + G + R A R+ GGS S+ + + S + P+
Sbjct: 419 FMYSDSDSEPTGSVSNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPS 478
Query: 194 TTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILEEQ--LAGVSAEQE 251
++ E+ S+ + S+ S S SS G + V +E L +S Q
Sbjct: 479 SSSGGESSETSSDLFEGSNEGSSSSGSS----GARREGRHRAPVTFDESGSLPFLSLAQF 534
Query: 252 VTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDHRLSALRCGHLF 311
+ P+ + ++ + L + + + TC++C+ ++T ++L L C H +
Sbjct: 535 FLLNEDDDDQPRGLTKEQIDNLAMRSFGENDALKTCSVCITEYTEG--NKLRKLPCSHEY 592
Query: 312 GYRCISTWLKGQVRKCPQCNK 332
CI WL + CP C +
Sbjct: 593 HVHCIDRWL-SENSTCPICRR 612
>gi|14149702 ring finger protein 167 [Homo sapiens]
Length = 350
Score = 43.9 bits (102), Expect = 6e-04
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 254 CIDGGKTLPKQPSPQKSEPLLPSASMDE-EEGDTCTICLEQWTNAGDHRLSALRCGHLFG 312
CI K L + ++ +P+ + ++ D C ICL+++ + GD +L L C H +
Sbjct: 196 CIQHRKRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYED-GD-KLRVLPCAHAYH 253
Query: 313 YRCISTWLKGQVRKCPQCNK 332
RC+ WL + CP C +
Sbjct: 254 SRCVDPWLTQTRKTCPICKQ 273
>gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens]
Length = 825
Score = 43.1 bits (100), Expect = 0.001
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 5 AMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVV-------SSQGVPSILQPAP 57
A E +VQ AE+ PA ++ PA +QP PA+ ++ P+ +QP P
Sbjct: 603 AEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPP 662
Query: 58 AEVISSQATPPLLQPAPQLSVDLTEVEVLGEDTVENIN--PRTSEQHRQGSDGNHTIPAS 115
AE ++ PP + AP L E E+T+ ++ P + S H+ PA
Sbjct: 663 AEEAPAEVQPPPAEEAPAEVQSLPAEETPIEETLAAVHSPPADDVPAEEASVDKHSPPAD 722
Query: 116 SL 117
L
Sbjct: 723 LL 724
Score = 40.0 bits (92), Expect = 0.008
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 24/120 (20%)
Query: 5 AMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEVISSQ 64
A E +VQ AE+ PA ++ PA +QP PA+ ++ P + APAEV S
Sbjct: 627 AEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQSLP 686
Query: 65 A-------------TPPLLQ-PAPQLSVD---------LTEVEVLGEDTVENINPRTSEQ 101
A +PP PA + SVD LTE +GE + E ++P SEQ
Sbjct: 687 AEETPIEETLAAVHSPPADDVPAEEASVDKHSPPADLLLTEEFPIGEASAE-VSPPPSEQ 745
Score = 34.3 bits (77), Expect = 0.45
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 10 VQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEVISSQATPPL 69
V ++ E QP +++ A +Q + A S++ P+ +QP PAE ++ PP
Sbjct: 567 VSIEEAPLELQPPSGEETTAEEASAAIQLLAATEASAEEAPAEVQPPPAEEAPAEVQPPP 626
Query: 70 LQPAP 74
+ AP
Sbjct: 627 AEEAP 631
Score = 33.9 bits (76), Expect = 0.59
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 27 ASSQGGPALLQPVPADVVSSQGVPSILQPAPAEVISSQATPPLLQPAP 74
AS++ PA +QP PA+ P+ +QP PAE ++ PP + AP
Sbjct: 601 ASAEEAPAEVQPPPAEEA-----PAEVQPPPAEEAPAEVQPPPAEEAP 643
Score = 33.1 bits (74), Expect = 1.0
Identities = 57/270 (21%), Positives = 99/270 (36%), Gaps = 24/270 (8%)
Query: 15 NHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEVISSQATPPLLQPAP 74
N + QP PA A PA +QP A+ S + + + P AE S+ P + P P
Sbjct: 312 NSVKVQPPPAEEAPLVEFPAEIQPPSAEESPSVELLAEILPPSAEESPSEEPPAEILPPP 371
Query: 75 QLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSMTNFISGLQRLHGML 134
+ VE+LGE + E ++G + + T ++ +
Sbjct: 372 --AEKSPSVELLGEIRSPSAQKAPIEVQPLPAEGALEEAPAKVEPPT-----VEETLADV 424
Query: 135 EFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDAYFQVSRTQPDL--- 191
+ L P + P R + S + + P + + + + L
Sbjct: 425 QPLLPEEA-----PREEARELQLSTAMETPAEEAPTEFQSPLPKETTAEEASAEIQLLAA 479
Query: 192 ---PATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILEEQLAGVSA 248
PA +E R+P+SEE + AE AEE+ A I + LA + A
Sbjct: 480 TEPPADETPAEARSPLSEETSAEEAHAEVQSPLAE----ETTAEEASAEI--QLLAAIEA 533
Query: 249 EQEVTCIDGGKTLPKQPSPQKSEPLLPSAS 278
+ T + L ++ S +++ + S S
Sbjct: 534 PADETPAEAQSPLSEETSAEEAPAEVQSPS 563
Score = 32.7 bits (73), Expect = 1.3
Identities = 60/252 (23%), Positives = 95/252 (37%), Gaps = 46/252 (18%)
Query: 17 AEQQPAPAGMASSQGGPALLQPVPADVV------------SSQGVPSILQPAPAEVISSQ 64
AE P A + S+ PA + P PA+ S+Q P +QP PAE +
Sbjct: 348 AEILPPSAEESPSEEPPAEILPPPAEKSPSVELLGEIRSPSAQKAPIEVQPLPAEGALEE 407
Query: 65 ATPPLLQPAPQLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSMTNFI 124
A P ++P P + L +V+ L + PR + Q S T PA + T F
Sbjct: 408 A-PAKVEP-PTVEETLADVQPLLPEEA----PREEARELQLSTAMET-PAEE--APTEFQ 458
Query: 125 SGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDS--ARLRAPLDAYF 182
S L + T SA + A D A R+PL
Sbjct: 459 SPLPK-------------------ETTAEEASAEIQLLAATEPPADETPAEARSPLSEET 499
Query: 183 QVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSS-AEYGGVVDQ---AEESGAVI 238
++ + + T S E+Q+ ++ ++ +D + AE + + AEE+ A +
Sbjct: 500 SAEEAHAEVQSPLAEETTAEEASAEIQLLAAIEAPADETPAEAQSPLSEETSAEEAPAEV 559
Query: 239 LEEQLAGVSAEQ 250
GVS E+
Sbjct: 560 QSPSAKGVSIEE 571
>gi|38045931 ring finger protein 122 [Homo sapiens]
Length = 155
Score = 42.7 bits (99), Expect = 0.001
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 284 GDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKCPQCNK 332
G TC +CLE + G L L C H F +C+ WL+ + CP CNK
Sbjct: 90 GQTCAVCLEDFK--GKDELGVLPCQHAFHRKCLVKWLEVRC-VCPMCNK 135
>gi|40807469 TRAF interacting protein [Homo sapiens]
Length = 469
Score = 42.0 bits (97), Expect = 0.002
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 287 CTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLK-GQVRKCPQCNKKARHSDIV--VLY 343
CTIC + + ++ D ++A+ CGH F +C+ W + R CPQC + I+ + +
Sbjct: 7 CTICSDFFDHSRD--VAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIINKLFF 64
Query: 344 ARTLRALDTSEQERMKSSLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQK 402
+ + E +K+ L + Q + E ++ + L D V LQ+
Sbjct: 65 DLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVSLQQ 123
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 41.2 bits (95), Expect = 0.004
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 277 ASMDEE---EGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKCPQCNKK 333
AS++E CT+CLE+ + +A CGHLF + CI+ W + +CP C +K
Sbjct: 280 ASLEERAVSRNPLCTLCLEERRHP-----TATPCGHLFCWECITAWCSSKA-ECPLCREK 333
Query: 334 ARHSDIVVL 342
++ L
Sbjct: 334 FPPQKLIYL 342
>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
Length = 326
Score = 41.2 bits (95), Expect = 0.004
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 277 ASMDEE---EGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKCPQCNKK 333
AS++E CT+CLE+ + +A CGHLF + CI+ W + +CP C +K
Sbjct: 260 ASLEERAVSRNPLCTLCLEERRHP-----TATPCGHLFCWECITAWCSSKA-ECPLCREK 313
Query: 334 ARHSDIVVL 342
++ L
Sbjct: 314 FPPQKLIYL 322
>gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens]
Length = 1208
Score = 41.2 bits (95), Expect = 0.004
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 280 DEEEGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKCPQC 330
+EEE + C IC E N LS L C H F +CI WL Q CP C
Sbjct: 1141 EEEEEEPCVICHE---NLSPENLSVLPCAHKFHAQCIRPWLM-QQGTCPTC 1187
>gi|57165361 ring finger protein 165 [Homo sapiens]
Length = 346
Score = 40.0 bits (92), Expect = 0.008
Identities = 27/67 (40%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 268 QKSEPLLPSASMDE-EEGDT---CTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQ 323
+K P DE EE DT CTICL + D R L C HLF C+ WL
Sbjct: 271 KKRRPQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVR--RLPCMHLFHQLCVDQWL-AM 327
Query: 324 VRKCPQC 330
+KCP C
Sbjct: 328 SKKCPIC 334
>gi|169166423 PREDICTED: hypothetical protein [Homo sapiens]
Length = 286
Score = 39.7 bits (91), Expect = 0.011
Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 19 QQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEVISSQATPPLLQPAPQLSV 78
Q P + +QG P+L P V +QG PS+ P V +Q TPPL PQ+
Sbjct: 83 QTPQVPRVPCAQGTPSLQTPQVPRVPCAQGTPSLQTPQVPRVPCAQGTPPL--QTPQVPR 140
Query: 79 DLTEVEVLG-------EDTVENINPRTSEQHRQGSDGNHTIPASSLHSMTNFISG 126
D + G DTV P + R G T+PA + S+ SG
Sbjct: 141 DTVPADTPGFPRPVRSGDTVPADTPGSPRPVRSGD----TVPADTPGSLHPVRSG 191
Score = 33.1 bits (74), Expect = 1.0
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 19 QQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEVISSQATPPLLQP 72
Q P + +QG P+L P V +QG PS+ P V +Q TP L P
Sbjct: 32 QTPQVPRVPCAQGTPSLQTPQVPRVPCAQGTPSLQTPQVPRVPCAQGTPSLQTP 85
Score = 33.1 bits (74), Expect = 1.0
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 19 QQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEVISSQATPPLLQP 72
Q P + +QG P+L P V +QG PS+ P V +Q TP L P
Sbjct: 49 QTPQVPRVPCAQGTPSLQTPQVPRVPCAQGTPSLQTPQVPRVPCAQGTPSLQTP 102
Score = 31.6 bits (70), Expect = 2.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 29 SQGGPALLQPVPADVVSSQGVPSILQPAPAEVISSQATPPLLQP 72
+QG P+L P V +QG PS+ P V +Q TP L P
Sbjct: 25 AQGTPSLQTPQVPRVPCAQGTPSLQTPQVPRVPCAQGTPSLQTP 68
>gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 39.7 bits (91), Expect = 0.011
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 266 SPQKSEPLLPSASMD-------EEEGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCIST 318
SP+ S PS S + ++ C ICL+ A D +S CGHLF + C+
Sbjct: 11 SPENSSAGGPSGSSNGAGESGGQDSTFECNICLD---TAKDAVISL--CGHLFCWPCLHQ 65
Query: 319 WLKGQVRK--CPQCNKKARHSDIVVLYARTLRALDTSEQERMKSSLLKEQMLRKQAE 373
WL+ + + CP C ++ LY R T +Q+ + + + Q R + E
Sbjct: 66 WLETRPNRQVCPVCKAGISRDKVIPLYGRG----STGQQDPREKTPPRPQGQRPEPE 118
>gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 39.7 bits (91), Expect = 0.011
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 266 SPQKSEPLLPSASMD-------EEEGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCIST 318
SP+ S PS S + ++ C ICL+ A D +S CGHLF + C+
Sbjct: 11 SPENSSAGGPSGSSNGAGESGGQDSTFECNICLD---TAKDAVISL--CGHLFCWPCLHQ 65
Query: 319 WLKGQVRK--CPQCNKKARHSDIVVLYARTLRALDTSEQERMKSSLLKEQMLRKQAE 373
WL+ + + CP C ++ LY R T +Q+ + + + Q R + E
Sbjct: 66 WLETRPNRQVCPVCKAGISRDKVIPLYGRG----STGQQDPREKTPPRPQGQRPEPE 118
>gi|94536782 tripartite motif-containing 35 isoform 2 [Homo sapiens]
Length = 493
Score = 39.3 bits (90), Expect = 0.014
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 21/107 (19%)
Query: 268 QKSEPLLPSASMDEEEGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVR-K 326
++S + P S +E C +C + + +A LRCGH F C+S + QV
Sbjct: 2 ERSPDVSPGPSRSFKEELLCAVCYDPFRDA-----VTLRCGHNFCRGCVSRCWEVQVSPT 56
Query: 327 CPQCNKKARHSDIVVLYARTLRALDTSEQERMKSSLLKEQMLRKQAE 373
CP C +A +D+ RT L+ L E++LR++AE
Sbjct: 57 CPVCKDRASPADL-----RTNHTLNN----------LVEKLLREEAE 88
>gi|5174653 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 38.9 bits (89), Expect = 0.018
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 278 SMDEEEGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHS 337
S+D E G C++C+ + ++L L C H F CI WL CP C + S
Sbjct: 623 SIDSELGKICSVCISDYVTG--NKLRQLPCMHEFHIHCIDRWLSENC-TCPICRQPVLGS 679
Query: 338 DI 339
+I
Sbjct: 680 NI 681
>gi|34305295 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 38.9 bits (89), Expect = 0.018
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 278 SMDEEEGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHS 337
S+D E G C++C+ + ++L L C H F CI WL CP C + S
Sbjct: 623 SIDSELGKICSVCISDYVTG--NKLRQLPCMHEFHIHCIDRWLSENC-TCPICRQPVLGS 679
Query: 338 DI 339
+I
Sbjct: 680 NI 681
>gi|34305293 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 38.9 bits (89), Expect = 0.018
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 278 SMDEEEGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHS 337
S+D E G C++C+ + ++L L C H F CI WL CP C + S
Sbjct: 623 SIDSELGKICSVCISDYVTG--NKLRQLPCMHEFHIHCIDRWLSENC-TCPICRQPVLGS 679
Query: 338 DI 339
+I
Sbjct: 680 NI 681
>gi|37622894 ring finger protein 126 [Homo sapiens]
Length = 311
Score = 38.5 bits (88), Expect = 0.024
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 265 PSPQKSEPLLPSASMDEEE---GDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLK 321
P+ ++ LP+ + EE G C +C + + A R+ L C HLF CI WL+
Sbjct: 204 PADKEKIQALPTVPVTEEHVGSGLECPVCKDDY--ALGERVRQLPCNHLFHDGCIVPWLE 261
Query: 322 GQVRKCPQCNK 332
Q CP C K
Sbjct: 262 -QHDSCPVCRK 271
>gi|55743108 ATG16 autophagy related 16-like 2 [Homo sapiens]
Length = 619
Score = 38.5 bits (88), Expect = 0.024
Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 35/175 (20%)
Query: 402 KLTSHQSQNLQQPRGSQAWVLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSC 461
KLT HQ+ + R + W L + S+ +++YC+ + C
Sbjct: 431 KLTRHQAVTGSRDRTVKEWDLGRAYCSR-------------------TINVLSYCNDVVC 471
Query: 462 ---LVISQPSPQASFLPGFGVKMLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASL 518
++IS + Q ++ + +Q IP+ G+ + L+ S + + LLS S
Sbjct: 472 GDHIIISGHNDQK-------IRFWDSRGPHCTQVIPVQGR-VTSLSLS-HDQLHLLSCSR 522
Query: 519 DNTIKLTSLETNTVVQTYNAG----RPVWSCCWCLDEANYIYAGLANGSILVYDV 569
DNT+K+ L + + Q + A W+ + +Y AG +G++ ++DV
Sbjct: 523 DNTLKVIDLRVSNIRQVFRADGFKCGSDWTKAVFSPDRSYALAGSCDGALYIWDV 577
>gi|169160953 PREDICTED: hypothetical LOC644006 [Homo sapiens]
Length = 190
Score = 38.1 bits (87), Expect = 0.031
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 287 CTICLEQWTNAGDHR--LSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARH 336
C IC+++++ +R + + CGH+F +C+ LK CP C KK H
Sbjct: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH 182
>gi|239747623 PREDICTED: hypothetical protein XP_002347917 [Homo
sapiens]
Length = 190
Score = 38.1 bits (87), Expect = 0.031
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 287 CTICLEQWTNAGDHR--LSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARH 336
C IC+++++ +R + + CGH+F +C+ LK CP C KK H
Sbjct: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH 182
>gi|88943822 PREDICTED: hypothetical protein LOC644006 [Homo
sapiens]
Length = 190
Score = 38.1 bits (87), Expect = 0.031
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 287 CTICLEQWTNAGDHR--LSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARH 336
C IC+++++ +R + + CGH+F +C+ LK CP C KK H
Sbjct: 132 CPICMDRYSEIVQNRRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH 182
>gi|37588873 ring finger protein 128 isoform 1 [Homo sapiens]
Length = 428
Score = 38.1 bits (87), Expect = 0.031
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 283 EGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKCPQC 330
+GD+C +C+E + R+ L C H+F C+ WL + R CP C
Sbjct: 273 DGDSCAVCIELYKPNDLVRI--LTCNHIFHKTCVDPWLL-EHRTCPMC 317
>gi|37588871 ring finger protein 128 isoform 2 [Homo sapiens]
Length = 402
Score = 38.1 bits (87), Expect = 0.031
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 283 EGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKCPQC 330
+GD+C +C+E + R+ L C H+F C+ WL + R CP C
Sbjct: 247 DGDSCAVCIELYKPNDLVRI--LTCNHIFHKTCVDPWLL-EHRTCPMC 291
>gi|33859668 Rabring 7 [Homo sapiens]
Length = 304
Score = 38.1 bits (87), Expect = 0.031
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 265 PSPQKSEPL--LPSASMDEEEGDT---CTICLEQWTNAGDHRLSALRCGHLFGYRCISTW 319
P P E + LP+ ++ +E+ D C +C E +T + + L C H F CI W
Sbjct: 201 PPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTV--EEEVRQLPCNHFFHSSCIVPW 258
Query: 320 LKGQVRKCPQCNKKARHSD 338
L+ CP C K D
Sbjct: 259 LELH-DTCPVCRKSLNGED 276
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.129 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,950,088
Number of Sequences: 37866
Number of extensions: 1535621
Number of successful extensions: 7561
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 230
Number of HSP's that attempted gapping in prelim test: 7249
Number of HSP's gapped (non-prelim): 560
length of query: 774
length of database: 18,247,518
effective HSP length: 110
effective length of query: 664
effective length of database: 14,082,258
effective search space: 9350619312
effective search space used: 9350619312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.